FvH4_5g30880

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
21735396 .. 21740523
5128 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30880.t2

Sequence Viewer

Length: 1203 bp
ATGCTGTCTCCGGTGGAATCCAGAAGAACCCCGAAGCCCAAATCTGGGCCCAGTTCTCCTATCGTGTTCCCGGCCACCTGCATTGCTGCAATTGCTCTGGTTTTCCTCTACACCTATCTCAATTCCACCAGCGACTTCTCTTCTTCCTCCCTCAAAGCGCTAGAATCTGTTCCCAGTTTGATCAGCCAGCGCCACGACAAGTACCTCTACTGGGGCACCCGAATCGACTGCCCCGGCAAGCACTGCCTGTCCTGCGAGGGCCTTGGCCACCAGGAGTCCAGTCTCCGCTGTGCTCTTGAAGAAGCCATCTTTCTCCAGAGGACTTTTGTAATGCCGTCGAGAATGTGCATCAATCCCATACACAATAAGAAAGGGATGTTTCATCACTCTGATATTGCAAGTTCAGATGAAAATAGTTGGAATGCAAACTCTTGTTCCATGGATTCTTTGTATGATATCGGCTTCATATCGGAGACTGTACCAGTAATTTTAGACAATTCAAAAATGTGGTATAAGGTGTTAACAACGAGCATGAAGTTGGGAGATAGAGGAGTTTCTCATGTGGAGCGAGTTAGTCGAGTTGAACTCAAGAACAGTAGTTTCTCAAATCTTTTGCTGATAAACAGAACTGCAAGCCTTCTCTCATGGTTTGCGGAGTGCAAGAATCGAAACAACCGTAGTGCTTTAATTTTGCCCTACTCTTTTCTCCCCTCGAGGGCAGCAAAGAAATTGAGGAATGCAGCTGATAAGATTAAGGAAATCCTTGGTGATTATGATGCCATTCATGTTTGTCGTGGAGATAGACTTAAGACCAGGAGGGACATGAATGGTGTTGAGAAGACCCTTTCACCTCATCTGGACAGGGACACACACCCTGAGTTTATTCTCCGCAGAATTGAAAAATGGGTCCCACCTGGACGAACTCTTTATATTGCTTCAAATGAAAGGAAACCAGGTTTCTTTTCACCGCTCTCCATCAGATACAAATTGGCATACTCATCAAATTATAGCCGCATATTGGAACCCTTGATTGAGAATAACTACCAATTGTTCATGATTGAAAGGCTTATCCTGATGGGTGCCAAAACATTCATTAGAACATTTAAAGAAGATGATACAGATCTCTATCTTACGGACGACCCCAAGAAGAACACCAAGAACTGGCAAATACCAGTCTACACCATGGATGAAAAGGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

401

Amino Acids

45.76

Weight (kDa)

9.24

Isoelectric Point (pI)

49.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 86
AbsI CCTCGAGG 1 cut(s) 712
Acc36I ACCTGC 1 cut(s) 86
AccB1I GGYRCC 2 cut(s) 215, 1079
AccB7I CCANNNNNTGG 1 cut(s) 1161
AccBSI CCGCTC 1 cut(s) 970
AccI GTMKAC 1 cut(s) 1176
AciI CCGC 5 cut(s) 286, 653, 889, 968, 1012
AcoI YGGCCR 2 cut(s) 72, 265
AfaI GTAC 2 cut(s) 203, 480
AfeI AGCGCT 1 cut(s) 159
AfiI CCNNNNNNNGG 6 cut(s) 44, 45, 211, 715, 1018, 1161
AflII CTTAAG 1 cut(s) 806
AgsI TTSAA 6 cut(s) 299, 501, 584, 899, 939, 1061
AjnI CCWGG 4 cut(s) 270, 812, 913, 952
AluBI AGCT 1 cut(s) 743
AluI AGCT 1 cut(s) 743
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 3 cut(s) 12, 287, 467
Ama87I CYCGRG 1 cut(s) 712
Aor51HI AGCGCT 1 cut(s) 159
AoxI GGCC 4 cut(s) 47, 72, 259, 265
ApaI GGGCCC 1 cut(s) 51
ApeKI GCWGC 3 cut(s) 86, 719, 740
Asp700I GAANNNNTTC 1 cut(s) 168
AspLEI GCGC 2 cut(s) 160, 192
AspS9I GGNCC 4 cut(s) 47, 48, 259, 907
AsuC2I CCSGG 2 cut(s) 71, 234
AsuHPI GGTGA 3 cut(s) 779, 840, 957
AvaI CYCGRG 1 cut(s) 712
AvaII GGWCC 1 cut(s) 907
BaeGI GKGCMC 2 cut(s) 51, 218
BalI TGGCCA 1 cut(s) 267
BanI GGYRCC 2 cut(s) 215, 1079
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 73, 731, 752
BccI CCATC 3 cut(s) 314, 983, 1069
BceAI ACGGC 1 cut(s) 319
BcgI CGANNNNNNTGC 4 cut(s) 205, 210, 239, 244
BciT130I CCWGG 4 cut(s) 272, 814, 915, 954
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 2 cut(s) 71, 234
BcoDI GTCTC 3 cut(s) 12, 287, 467
BfaI CTAG 1 cut(s) 161
BfoI RGCGCY 2 cut(s) 161, 193
BfrI CTTAAG 1 cut(s) 806
BfuAI ACCTGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 1120
BisI GCNGC 4 cut(s) 87, 720, 741, 1012
BlsI GCNGC 4 cut(s) 88, 721, 742, 1013
Bme1390I CCNGG 6 cut(s) 71, 234, 272, 814, 915, 954
Bme18I GGWCC 1 cut(s) 907
BmeT110I CYCGRG 1 cut(s) 712
BmgT120I GGNCC 4 cut(s) 47, 48, 259, 907
BmiI GGNNCC 6 cut(s) 49, 217, 908, 909, 1023, 1081
BmrFI CCNGG 6 cut(s) 71, 234, 272, 814, 915, 954
BmrI ACTGGG 3 cut(s) 45, 168, 220
BmsI GCATC 2 cut(s) 357, 766
BmuI ACTGGG 3 cut(s) 45, 168, 220
BpiI GAAGAC 1 cut(s) 845
BplI GAGNNNNNCTC 2 cut(s) 570, 602
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 2 cut(s) 71, 234
BsaBI GATNNNNATC 2 cut(s) 1119, 1125
BsaJI CCNNGG 5 cut(s) 232, 262, 438, 763, 1182
BsaWI WCCGGW 1 cut(s) 10
Bsc4I CCNNNNNNNGG 6 cut(s) 44, 45, 211, 715, 1018, 1161
Bse1I ACTGG 7 cut(s) 51, 174, 215, 279, 482, 1166, 1172
Bse3DI GCAATG 1 cut(s) 81
Bse8I GATNNNNATC 2 cut(s) 1119, 1125
BseBI CCWGG 4 cut(s) 272, 814, 915, 954
BseDI CCNNGG 5 cut(s) 232, 262, 438, 763, 1182
BseGI GGATG 2 cut(s) 381, 1192
BseJI GATNNNNATC 2 cut(s) 1119, 1125
BseLI CCNNNNNNNGG 6 cut(s) 44, 45, 211, 715, 1018, 1161
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 867
BseNI ACTGG 7 cut(s) 51, 174, 215, 279, 482, 1166, 1172
BseRI GAGGAG 1 cut(s) 564
BseSI GKGCMC 2 cut(s) 51, 218
BseXI GCAGC 3 cut(s) 73, 731, 752
BshFI GGCC 4 cut(s) 49, 74, 261, 267
BshNI GGYRCC 2 cut(s) 215, 1079
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 712
BsiSI CCGG 3 cut(s) 11, 71, 234
BslFI GGGAC 3 cut(s) 833, 878, 893
BslI CCNNNNNNNGG 6 cut(s) 44, 45, 211, 715, 1018, 1161
BsmAI GTCTC 3 cut(s) 12, 287, 467
BsmFI GGGAC 3 cut(s) 833, 878, 893
BsmI GAATGC 2 cut(s) 427, 742
BsnI GGCC 4 cut(s) 49, 74, 261, 267
BsoBI CYCGRG 1 cut(s) 712
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 51, 218, 295
Bsp143I GATC 2 cut(s) 180, 1120
Bsp19I CCATGG 2 cut(s) 438, 1182
BspACI CCGC 5 cut(s) 286, 653, 889, 968, 1012
BspANI GGCC 4 cut(s) 49, 74, 261, 267
BspCNI CTCAG 1 cut(s) 868
BspHI TCATGA 1 cut(s) 1053
BspLI GGNNCC 6 cut(s) 49, 217, 908, 909, 1023, 1081
BspMI ACCTGC 1 cut(s) 86
BspT107I GGYRCC 2 cut(s) 215, 1079
BspTI CTTAAG 1 cut(s) 806
BsrBI CCGCTC 1 cut(s) 970
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 7 cut(s) 51, 174, 215, 279, 482, 1166, 1172
BssECI CCNNGG 5 cut(s) 232, 262, 438, 763, 1182
BssMI GATC 2 cut(s) 180, 1120
BssT1I CCWWGG 4 cut(s) 262, 438, 763, 1182
Bst2UI CCWGG 4 cut(s) 272, 814, 915, 954
Bst4CI ACNGT 3 cut(s) 478, 596, 677
Bst6I CTCTTC 1 cut(s) 145
BstAFI CTTAAG 1 cut(s) 806
BstAPI GCANNNNNTGC 1 cut(s) 243
BstC8I GCNNGC 3 cut(s) 188, 239, 634
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 2 cut(s) 438, 1182
BstF5I GGATG 2 cut(s) 381, 1192
BstH2I RGCGCY 2 cut(s) 161, 193
BstHHI GCGC 2 cut(s) 160, 192
BstKTI GATC 2 cut(s) 183, 1123
BstMAI GTCTC 3 cut(s) 12, 287, 467
BstMBI GATC 2 cut(s) 180, 1120
BstMWI GCNNNNNNNGC 3 cut(s) 92, 243, 252
BstNI CCWGG 4 cut(s) 272, 814, 915, 954
BstSCI CCNGG 6 cut(s) 69, 232, 270, 812, 913, 952
BstSLI GKGCMC 2 cut(s) 51, 218
BstV1I GCAGC 3 cut(s) 73, 731, 752
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 1 cut(s) 1120
BstYI RGATCY 1 cut(s) 1120
BsuRI GGCC 4 cut(s) 49, 74, 261, 267
BtgI CCRYGG 2 cut(s) 438, 1182
BtsCI GGATG 2 cut(s) 381, 1192
BtsI GCAGTG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 86
Cac8I GCNNGC 3 cut(s) 188, 239, 634
CciI TCATGA 1 cut(s) 1053
CfoI GCGC 2 cut(s) 160, 192
Cfr13I GGNCC 4 cut(s) 47, 48, 259, 907
CsiI ACCWGGT 1 cut(s) 952
Csp6I GTAC 2 cut(s) 202, 479
CspCI CAANNNNNGTGG 2 cut(s) 64, 99
CviAII CATG 8 cut(s) 439, 532, 560, 645, 785, 823, 1054, 1183
CviQI GTAC 2 cut(s) 202, 479
DdeI CTNAG 1 cut(s) 876
DpnI GATC 2 cut(s) 182, 1122
DpnII GATC 2 cut(s) 180, 1120
DraI TTTAAA 1 cut(s) 1105
EaeI YGGCCR 2 cut(s) 72, 265
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco130I CCWWGG 4 cut(s) 262, 438, 763, 1182
Eco24I GRGCYC 1 cut(s) 51
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 907
Eco47III AGCGCT 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 712
EcoO109I RGGNCCY 2 cut(s) 259, 907
EcoRII CCWGG 4 cut(s) 270, 812, 913, 952
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 4 cut(s) 262, 438, 763, 1182
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 4 cut(s) 262, 438, 763, 1182
FaeI CATG 8 cut(s) 442, 535, 563, 648, 788, 826, 1057, 1186
FaqI GGGAC 3 cut(s) 833, 878, 893
FatI CATG 8 cut(s) 438, 531, 559, 644, 784, 822, 1053, 1182
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 1 cut(s) 1176
Fnu4HI GCNGC 4 cut(s) 87, 720, 741, 1012
FokI GGATG 2 cut(s) 388, 1199
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 4 cut(s) 87, 720, 741, 1012
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 159, 191
GluI GCNGC 4 cut(s) 87, 720, 741, 1012
GsuI CTGGAG 1 cut(s) 299
HaeII RGCGCY 2 cut(s) 161, 193
HaeIII GGCC 4 cut(s) 49, 74, 261, 267
HapII CCGG 3 cut(s) 11, 71, 234
HhaI GCGC 2 cut(s) 160, 192
Hin1II CATG 8 cut(s) 442, 535, 563, 648, 788, 826, 1057, 1186
Hin6I GCGC 2 cut(s) 158, 190
HinP1I GCGC 2 cut(s) 158, 190
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 6 cut(s) 17, 164, 222, 275, 443, 664
HpaI GTTAAC 1 cut(s) 522
HpaII CCGG 3 cut(s) 11, 71, 234
HphI GGTGA 3 cut(s) 779, 840, 957
Hpy166II GTNNAC 2 cut(s) 522, 1177
Hpy188I TCNGA 4 cut(s) 391, 406, 472, 980
Hpy188III TCNNGA 8 cut(s) 21, 296, 316, 339, 589, 857, 1054, 1072
Hpy8I GTNNAC 2 cut(s) 522, 1177
Hpy99I CGWCG 1 cut(s) 340
HpyAV CCTTC 2 cut(s) 647, 1191
HpyCH4III ACNGT 3 cut(s) 478, 596, 677
HpyCH4V TGCA 8 cut(s) 81, 89, 348, 398, 425, 632, 660, 740
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 243, 252
HpyF3I CTNAG 1 cut(s) 876
Hsp92II CATG 8 cut(s) 442, 535, 563, 648, 788, 826, 1057, 1186
HspAI GCGC 2 cut(s) 158, 190
KflI GGGWCCC 1 cut(s) 907
Ksp22I TGATCA 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 522
Kzo9I GATC 2 cut(s) 180, 1120
LmnI GCTCC 1 cut(s) 565
Lsp1109I GCAGC 3 cut(s) 73, 731, 752
LweI GCATC 2 cut(s) 357, 766
MabI ACCWGGT 1 cut(s) 952
MaeI CTAG 1 cut(s) 161
MalI GATC 2 cut(s) 182, 1122
MbiI CCGCTC 1 cut(s) 970
MboI GATC 2 cut(s) 180, 1120
MboII GAAGA 7 cut(s) 36, 132, 135, 311, 850, 1121, 1159
MfeI CAATTG 2 cut(s) 90, 1046
MflI RGATCY 1 cut(s) 1120
MhlI GDGCHC 3 cut(s) 51, 218, 295
MlsI TGGCCA 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 398
Mox20I TGGCCA 1 cut(s) 267
MroXI GAANNNNTTC 1 cut(s) 168
MscI TGGCCA 1 cut(s) 267
MseI TTAA 5 cut(s) 521, 686, 753, 807, 1104
Msp20I TGGCCA 1 cut(s) 267
MspA1I CMGCKG 2 cut(s) 288, 743
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 3 cut(s) 11, 71, 234
MspR9I CCNGG 6 cut(s) 71, 234, 272, 814, 915, 954
MunI CAATTG 2 cut(s) 90, 1046
Mva1269I GAATGC 2 cut(s) 427, 742
MvaI CCWGG 4 cut(s) 272, 814, 915, 954
MwoI GCNNNNNNNGC 3 cut(s) 92, 243, 252
NciI CCSGG 2 cut(s) 71, 234
NcoI CCATGG 2 cut(s) 438, 1182
NdeII GATC 2 cut(s) 180, 1120
NlaIII CATG 8 cut(s) 442, 535, 563, 648, 788, 826, 1057, 1186
NlaIV GGNNCC 6 cut(s) 49, 217, 908, 909, 1023, 1081
PaeR7I CTCGAG 1 cut(s) 712
PagI TCATGA 1 cut(s) 1053
PaqCI CACCTGC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 673
PctI GAATGC 2 cut(s) 427, 742
PdmI GAANNNNTTC 1 cut(s) 168
PfeI GAWTC 5 cut(s) 17, 164, 222, 443, 664
PflMI CCANNNNNTGG 1 cut(s) 1161
PkrI GCNGC 4 cut(s) 88, 721, 742, 1013
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PpuMI RGGWCCY 1 cut(s) 907
Psp5II RGGWCCY 1 cut(s) 907
Psp6I CCWGG 4 cut(s) 270, 812, 913, 952
PspGI CCWGG 4 cut(s) 270, 812, 913, 952
PspN4I GGNNCC 6 cut(s) 49, 217, 908, 909, 1023, 1081
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 4 cut(s) 47, 48, 259, 907
PspPPI RGGWCCY 1 cut(s) 907
PspXI VCTCGAGB 1 cut(s) 712
PsuI RGATCY 1 cut(s) 1120
PvuII CAGCTG 1 cut(s) 743
RsaI GTAC 2 cut(s) 203, 480
RsaNI GTAC 2 cut(s) 202, 479
SaqAI TTAA 5 cut(s) 521, 686, 753, 807, 1104
SatI GCNGC 4 cut(s) 87, 720, 741, 1012
Sau3AI GATC 2 cut(s) 180, 1120
Sau96I GGNCC 4 cut(s) 47, 48, 259, 907
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 6 cut(s) 71, 234, 272, 814, 915, 954
SduI GDGCHC 3 cut(s) 51, 218, 295
SetI ASST 9 cut(s) 80, 116, 207, 519, 745, 853, 916, 958, 1202
SexAI ACCWGGT 1 cut(s) 952
SfaNI GCATC 2 cut(s) 357, 766
Sfr274I CTCGAG 1 cut(s) 712
SinI GGWCC 1 cut(s) 907
SlaI CTCGAG 1 cut(s) 712
SmlI CTYRAG 3 cut(s) 587, 712, 806
SmoI CTYRAG 3 cut(s) 587, 712, 806
SsiI CCGC 5 cut(s) 286, 653, 889, 968, 1012
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 6 cut(s) 69, 232, 270, 812, 913, 952
StyI CCWWGG 4 cut(s) 262, 438, 763, 1182
TaaI ACNGT 3 cut(s) 478, 596, 677
TaqI TCGA 5 cut(s) 225, 338, 577, 667, 713
TauI GCSGC 1 cut(s) 1014
TfiI GAWTC 5 cut(s) 17, 164, 222, 443, 664
Tru1I TTAA 5 cut(s) 521, 686, 753, 807, 1104
Tru9I TTAA 5 cut(s) 521, 686, 753, 807, 1104
TscAI CASTG 1 cut(s) 248
TseI GCWGC 3 cut(s) 86, 719, 740
TspGWI ACGGA 1 cut(s) 1148
TspRI CASTG 1 cut(s) 248
Van91I CCANNNNNTGG 1 cut(s) 1161
Vha464I CTTAAG 1 cut(s) 806
VpaK11BI GGWCC 1 cut(s) 907
XhoI CTCGAG 1 cut(s) 712
XmiI GTMKAC 1 cut(s) 1176
XmnI GAANNNNTTC 1 cut(s) 168
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.