Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026504.1

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Forward (+)

15478 .. 15825

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026504.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgctgtctccaatgggattgagaagacccccaaagcccaaatctgggcccagttcccccatcatcttcctcgccatctgcatagccgcaattgctctcgtcttcctctattcctatctcagttccaccaatgccttctcttcttcctccctcaaaaccctacagactgtccccaatctgatcaaccacagccacgagaagtacctctactggggtacccgaatcgactgccccggcaagcactgccagtcctgtgagggcctcgcccaccaagagtccagcctccgctgtgctcttgaagaggccatcttcctccgcaggtacctacattctcacttttccatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

115

Amino Acids

12.85

Weight (kDa)

9.12

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	309
Acc65I	GGTACC	2 cut(s)	215, 321
AccB1I	GGYRCC	2 cut(s)	215, 321
AciI	CCGC	3 cut(s)	87, 286, 316
AfaI	GTAC	3 cut(s)	203, 217, 323
AfiI	CCNNNNNNNGG	3 cut(s)	44, 45, 211
AgsI	TTSAA	1 cut(s)	299
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	12
AoxI	GGCC	3 cut(s)	47, 259, 303
ApaI	GGGCCC	1 cut(s)	51
Asp718I	GGTACC	2 cut(s)	215, 321
AspS9I	GGNCC	3 cut(s)	47, 48, 259
AsuC2I	CCSGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	51
BaeI	ACNNNNGTAYC	2 cut(s)	199, 232
BanI	GGYRCC	2 cut(s)	215, 321
BanII	GRGCYC	1 cut(s)	51
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BauI	CACGAG	1 cut(s)	194
BbsI	GAAGAC	2 cut(s)	31, 94
Bbv12I	GWGCWC	1 cut(s)	295
BccI	CCATC	3 cut(s)	68, 83, 314
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	161
BfuAI	ACCTGC	1 cut(s)	309
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	234
BmgT120I	GGNCC	3 cut(s)	47, 48, 259
BmiI	GGNNCC	3 cut(s)	49, 217, 323
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	2 cut(s)	45, 220
BmuI	ACTGGG	2 cut(s)	45, 220
BpiI	GAAGAC	2 cut(s)	31, 94
BpuMI	CCSGG	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 45, 211
Bse1I	ACTGG	3 cut(s)	51, 215, 247
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	3 cut(s)	44, 45, 211
BseMII	CTCAG	1 cut(s)	133
BseNI	ACTGG	3 cut(s)	51, 215, 247
BseSI	GKGCMC	1 cut(s)	51
BshFI	GGCC	3 cut(s)	49, 261, 305
BshNI	GGYRCC	2 cut(s)	215, 321
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	3 cut(s)	44, 45, 211
BsmAI	GTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	3 cut(s)	49, 261, 305
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	2 cut(s)	51, 295
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	3 cut(s)	87, 286, 316
BspANI	GGCC	3 cut(s)	49, 261, 305
BspCNI	CTCAG	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	49, 217, 323
BspMI	ACCTGC	1 cut(s)	309
BspT107I	GGYRCC	2 cut(s)	215, 321
BsrI	ACTGG	3 cut(s)	51, 215, 247
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	169
Bst6I	CTCTTC	2 cut(s)	145, 294
BstAPI	GCANNNNNTGC	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	119
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 243
BstSCI	CCNGG	1 cut(s)	232
BstSFI	CTRYAG	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	51
BstV2I	GAAGAC	2 cut(s)	31, 94
BsuRI	GGCC	3 cut(s)	49, 261, 305
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	239
Cfr13I	GGNCC	3 cut(s)	47, 48, 259
Csp6I	GTAC	3 cut(s)	202, 216, 322
CviJI	RGCY	7 cut(s)	37, 49, 86, 192, 261, 282, 305
CviKI_1	RGCY	7 cut(s)	37, 49, 86, 192, 261, 282, 305
CviQI	GTAC	3 cut(s)	202, 216, 322
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	145, 294
EarI	CTCTTC	2 cut(s)	145, 294
Eco24I	GRGCYC	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	51
FaiI	YATR	1 cut(s)	83
FaqI	GGGAC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	87
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	49, 261, 305
HapII	CCGG	1 cut(s)	234
HinfI	GANTC	2 cut(s)	222, 275
HpaII	CCGG	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	169
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 243
HpyF3I	CTNAG	1 cut(s)	119
KpnI	GGTACC	2 cut(s)	219, 325
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	30, 64, 196, 247, 260, 265, 292, 304
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	7 cut(s)	36, 58, 94, 132, 135, 301, 311
MfeI	CAATTG	1 cut(s)	90
MhlI	GDGCHC	2 cut(s)	51, 295
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	92, 243
NciI	CCSGG	1 cut(s)	234
NdeII	GATC	1 cut(s)	180
NlaIV	GGNNCC	3 cut(s)	49, 217, 323
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	283
PpsI	GAGTC	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	49, 217, 323
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	3 cut(s)	47, 48, 259
RsaI	GTAC	3 cut(s)	203, 217, 323
RsaNI	GTAC	3 cut(s)	202, 216, 322
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	47, 48, 259
SchI	GAGTC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	51, 295
SetI	ASST	3 cut(s)	207, 323, 327
SfcI	CTRYAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	3 cut(s)	87, 286, 316
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	225
TasI	AATT	1 cut(s)	90
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	248
TspRI	CASTG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.