Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Forward (+)

13078962 .. 13084083

Gene Structure 5122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1091500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCATTTCCTAGAACCCAAAAGTCCAAACCAGTACCCAGTTCCCCAATCATATTCCTTTCCATCTGCATAGCTGCCATTGCACTCCTCTTCCTCTTCTCCCCTCTCATATCCACTAGTGGGTTCTATTTATCCTCACCAAAAATCCTAGAAAGCATGCCTGAGGACAAGTACAAGAACCAAAACCACCAAAGTGGCCACGAGAAGTACCTCTATTGGGCTGACAAAATTGATTGCCCTGGAAAGCACTGTGAGTCTTGTGCAGGATTGGGCCACCAGGAGTCAAGCCTTAGGCGTGCTCTTGAAGAGGCCATAACTTTTGTAATGCCTTCGAGAATGTGTCTCAACCCAATGCACAATAAGAAAGCAGTCCTTCATCACTCTAATGATGGAATTTCAGAAGAAAGGTTTATGGAGTGCAAGGATCGAAAAAATCATAGTGCTATAATTTTGCCTCACTCCTTTCTCCCCTCAATGATTAAAGAACTCCAAGGTGATTATGATGCCATTCATGTTCGTCGTGGTGATATTTTAAAGACCAGGATGGACAGGTTTGGCGTCAGCATGACCCTGCATCCTCATACTCACCCAGAGTTTATTCTCCGTAGAATTGAAAAATGGGTCCCATCTGGACGAACTCTTTATATTGCTCAAATGAGGGGACACGGGGAATTTTTTCACCTCTTTCAGTCTGGTAAGTCCTTTTCAGGCATGTTCAGGTTCTGTTCACCATCTACTTTAGAGATGAAAACCTGTGTTCAATGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

257

Amino Acids

29.25

Weight (kDa)

9.04

Isoelectric Point (pI)

60.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	432
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	393, 671
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	3 cut(s)	36, 173, 209
AfiI	CCNNNNNNNGG	2 cut(s)	120, 217
AgsI	TTSAA	3 cut(s)	305, 614, 761
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	3 cut(s)	238, 276, 539
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	432
AlwNI	CAGNNNCTG	1 cut(s)	723
AoxI	GGCC	3 cut(s)	196, 271, 309
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	2 cut(s)	393, 671
Asp700I	GAANNNNTTC	1 cut(s)	675
AspS9I	GGNCC	2 cut(s)	271, 622
AsuHPI	GGTGA	6 cut(s)	129, 506, 536, 578, 671, 720
AvaII	GGWCC	1 cut(s)	622
AxyI	CCTNAGG	2 cut(s)	162, 290
BalI	TGGCCA	1 cut(s)	198
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	5 cut(s)	71, 383, 538, 634, 739
BciT130I	CCWGG	3 cut(s)	240, 278, 541
BcoDI	GTCTC	1 cut(s)	347
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	3 cut(s)	12, 117, 149
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	3 cut(s)	240, 278, 541
Bme18I	GGWCC	1 cut(s)	622
BmgT120I	GGNCC	2 cut(s)	271, 622
BmiI	GGNNCC	2 cut(s)	623, 624
BmrFI	CCNGG	3 cut(s)	240, 278, 541
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	2 cut(s)	493, 583
BmuI	ACTGGG	1 cut(s)	33
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	2 cut(s)	238, 490
Bsc4I	CCNNNNNNNGG	2 cut(s)	120, 217
Bse1I	ACTGG	2 cut(s)	32, 39
Bse21I	CCTNAGG	2 cut(s)	162, 290
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	3 cut(s)	240, 278, 541
BseDI	CCNNGG	2 cut(s)	238, 490
BseGI	GGATG	2 cut(s)	549, 574
BseLI	CCNNNNNNNGG	2 cut(s)	120, 217
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	32, 39
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	61
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	198, 273, 311
BsiHKAI	GWGCWC	1 cut(s)	301
BslFI	GGGAC	2 cut(s)	608, 675
BslI	CCNNNNNNNGG	2 cut(s)	120, 217
BsmAI	GTCTC	1 cut(s)	347
BsmFI	GGGAC	2 cut(s)	608, 675
BsnI	GGCC	3 cut(s)	198, 273, 311
Bsp1286I	GDGCHC	1 cut(s)	301
Bsp143I	GATC	1 cut(s)	424
BspANI	GGCC	3 cut(s)	198, 273, 311
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	623, 624
BspPI	GGATC	1 cut(s)	432
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	2 cut(s)	32, 39
BssECI	CCNNGG	2 cut(s)	238, 490
BssMI	GATC	1 cut(s)	424
BssNI	GRCGYC	1 cut(s)	558
BssSI	CACGAG	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	490
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	3 cut(s)	240, 278, 541
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	95, 101, 300
BstACI	GRCGYC	1 cut(s)	558
BstC8I	GCNNGC	2 cut(s)	158, 297
BstDEI	CTNAG	2 cut(s)	162, 290
BstF5I	GGATG	2 cut(s)	549, 574
BstKTI	GATC	1 cut(s)	427
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	3 cut(s)	240, 278, 541
BstNSI	RCATGY	2 cut(s)	160, 715
BstSCI	CCNGG	3 cut(s)	238, 276, 539
BstV1I	GCAGC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	194
Bsu36I	CCTNAGG	2 cut(s)	162, 290
BsuRI	GGCC	3 cut(s)	198, 273, 311
BtsCI	GGATG	2 cut(s)	549, 574
BtsIMutI	CAGTG	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	158, 297
CaiI	CAGNNNCTG	1 cut(s)	723
Cfr13I	GGNCC	2 cut(s)	271, 622
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	35, 172, 208
CviAII	CATG	4 cut(s)	157, 512, 565, 712
CviJI	RGCY	6 cut(s)	74, 198, 221, 273, 288, 311
CviKI_1	RGCY	6 cut(s)	74, 198, 221, 273, 288, 311
CviQI	GTAC	3 cut(s)	35, 172, 208
DdeI	CTNAG	2 cut(s)	162, 290
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
DraI	TTTAAA	1 cut(s)	534
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	95, 101, 300
EarI	CTCTTC	3 cut(s)	95, 101, 300
Eco130I	CCWWGG	1 cut(s)	490
Eco47I	GGWCC	1 cut(s)	622
Eco81I	CCTNAGG	2 cut(s)	162, 290
EcoO109I	RGGNCCY	1 cut(s)	622
EcoRII	CCWGG	3 cut(s)	238, 276, 539
EcoT14I	CCWWGG	1 cut(s)	490
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	4 cut(s)	160, 515, 568, 715
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	2 cut(s)	608, 675
FatI	CATG	4 cut(s)	156, 511, 564, 711
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	2 cut(s)	556, 561
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	3 cut(s)	12, 117, 149
GluI	GCNGC	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	198, 273, 311
HgaI	GACGC	1 cut(s)	547
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	4 cut(s)	160, 515, 568, 715
HinfI	GANTC	2 cut(s)	254, 281
HphI	GGTGA	6 cut(s)	129, 506, 536, 578, 671, 720
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	1 cut(s)	400
Hpy188III	TCNNGA	3 cut(s)	302, 333, 630
Hpy8I	GTNNAC	1 cut(s)	728
Hpy99I	CGWCG	1 cut(s)	522
HpyAV	CCTTC	2 cut(s)	339, 383
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	6 cut(s)	69, 83, 263, 355, 420, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	162, 290
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	4 cut(s)	160, 515, 568, 715
KflI	GGGWCCC	1 cut(s)	622
Kzo9I	GATC	1 cut(s)	424
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	493, 583
MaeI	CTAG	3 cut(s)	12, 117, 149
MalI	GATC	1 cut(s)	426
MboI	GATC	1 cut(s)	424
MboII	GAAGA	4 cut(s)	82, 88, 317, 413
MhlI	GDGCHC	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	5 cut(s)	228, 393, 447, 609, 671
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	263, 290
Mox20I	TGGCCA	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	3 cut(s)	480, 533, 769
MslI	CAYNNNNRTG	2 cut(s)	192, 384
Msp20I	TGGCCA	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	240, 278, 541
MvaI	CCWGG	3 cut(s)	240, 278, 541
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	4 cut(s)	160, 515, 568, 715
NlaIV	GGNNCC	2 cut(s)	623, 624
NspI	RCATGY	2 cut(s)	160, 715
OliI	CACNNNNGTG	1 cut(s)	192
PaeI	GCATGC	1 cut(s)	160
PdmI	GAANNNNTTC	1 cut(s)	675
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	2 cut(s)	262, 289
PpsI	GAGTC	2 cut(s)	262, 289
PpuMI	RGGWCCY	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	622
Psp6I	CCWGG	3 cut(s)	238, 276, 539
PspGI	CCWGG	3 cut(s)	238, 276, 539
PspN4I	GGNNCC	2 cut(s)	623, 624
PspPI	GGNCC	2 cut(s)	271, 622
PspPPI	RGGWCCY	1 cut(s)	622
PstNI	CAGNNNCTG	1 cut(s)	723
RsaI	GTAC	3 cut(s)	36, 173, 209
RsaNI	GTAC	3 cut(s)	35, 172, 208
RseI	CAYNNNNRTG	2 cut(s)	192, 384
SaqAI	TTAA	3 cut(s)	480, 533, 769
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	2 cut(s)	271, 622
SchI	GAGTC	2 cut(s)	263, 290
ScrFI	CCNGG	3 cut(s)	240, 278, 541
SduI	GDGCHC	1 cut(s)	301
SetI	ASST	8 cut(s)	76, 213, 410, 496, 554, 684, 722, 755
SfaNI	GCATC	2 cut(s)	493, 583
SinI	GGWCC	1 cut(s)	622
SmiMI	CAYNNNNRTG	2 cut(s)	192, 384
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	5 cut(s)	228, 393, 447, 609, 671
SspMI	CTAG	3 cut(s)	12, 117, 149
StyD4I	CCNGG	3 cut(s)	238, 276, 539
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	2 cut(s)	332, 427
TasI	AATT	5 cut(s)	228, 393, 447, 609, 671
TatI	WGTACW	1 cut(s)	171
Tru1I	TTAA	3 cut(s)	480, 533, 769
Tru9I	TTAA	3 cut(s)	480, 533, 769
TscAI	CASTG	1 cut(s)	254
TseI	GCWGC	1 cut(s)	74
TspDTI	ATGAA	3 cut(s)	365, 500, 761
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	622
XapI	RAATTY	2 cut(s)	393, 671
XceI	RCATGY	2 cut(s)	160, 715
XmnI	GAANNNNTTC	1 cut(s)	675
XspI	CTAG	3 cut(s)	12, 117, 149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.