Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003834

Physical Location & Seq

Genomic Coordinates Forward (+)

13172791 .. 13184389

Gene Structure 11599 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1095500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCATTTCCTAGAACCCAAAAGTCCAAACCAGGACCTAGTTCCCCAATCATATTCCTTGCCATCTGCATAGCTGCCATTGCACTCCTCTTCCTCTTTTCTTCTCTCATATCCACTAGTGGGTTCTATATATCCTCTCCAAAAATCCTAGAAAGCATGCCCAAAGACAAGTACAAGAGCCAAAACCACCAAAGTGGCCATGAGAAGTACCTCTACTGGGGTGACAGAATTGATTGCCCTGGAAAGCACTGCGAGTCTTGTGCAGGATTGGGCCACCAGGAGTCCAGCCTTAGGTGTGCTCTTGAAGAGGCCATGTTCCTTCAGAGAACTTTTGTAATGCCTTCGAGAATGTGTCTCAACCCAATGCACAACAAGAAAGCAATCCTTCATCACTCAAATGATGGAATTTCAGAAGAAAGATGGGCAGCAAACTCTTGTTCCATGGACTCTTTGTATGATATGGATCTCATATCGGGCACTGTACCAGTAATTTTAGACAATTCAAAAAAGTGGTATCAGGTGGTGGAAACAAGTATGAAGTTGGAAGCTAGAGGAGCCGCTCATGTGGAAGGAGTTAATCGTGTTGATCTCAAAGAAAACAGTCGTTTCTCAAATCTTTTAATCATAAACAGAACTGCAAGCCCTCTCTCATGGTTTATGGAGTGCAAGGATCGAAAAAATAGTAGTGCTATAATTTTGCCTCACTCCTTTCTTCCCTCAATGGTGGCAAAGAAGCTAAGGAATGCAGCTGATGAGATTAAGGAACTCCTTGGTGATTATGATGCCATGCATGTTCGTCGTGGTGATATAATAAAGACCAGGAAGGACAGGTTTGGCGTCAACAGGACCCTGCATCCTCATGTGGACAGGGATACTCACCCCGAGTTTATTCTCCGCAGAATTGAAAAATGGGTCCCATCTGGACGAACTCTTTATATCGCTTCAAATGAAAGGACACCGGGTTTTTTTTCACTTCTCTCAGTCAGATACAAATTGGCGTATTCATCAAACTATAGCCACATCTTGGAGCCCGTGATTGAGAATAACTACCAGCTGTTCATGATTGAGAGGCTTATCATGACGGGTGCTAAAACGTTCATCAACACATTTAAAGAAGATGATACAGATCTCAGTCTTACTGATGACCGAAAGAAGAACACCAAGGTGTGGCAAATACCAGTTTATACCATGGATGAAGAGGGAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

403

Amino Acids

45.97

Weight (kDa)

8.75

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41150 AT2G41150 AT3G56750
fragaria_vesca	FvH4_2g10400 FvH4_2g10400 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880 FvH4_5g30880
malus_domestica	MD12G1095500.v1.1 MD14G1091500.v1.1
prunus_persica	Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.1G554500_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1 Prupe.2G101700_v2.0.a1
pyrus_communis	pycom12g08230 pycom12g08240 pycom14g08220
rosa_chinensis	RchiOBHm_Chr1g0339511
rosa_laevigata	RLG00000029233
rosa_multiflora	Rmu_sc0010554.1_g000003 Rmu_sc0026504.1_g000002
rosa_roxburghii	Rroxscaffold_4G00313480
rosa_rugosa	Rorug01G0141600.1
rosa_samantha	Rh1AG158800 Rh1CG148100
rosa_wichuraiana	Rw1G013250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1024, 1167
AccBSI	CCGCTC	1 cut(s)	560
AciI	CCGC	2 cut(s)	558, 895
AclI	AACGTT	1 cut(s)	1094
AclWI	GGATC	2 cut(s)	471, 678
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	405
AcuI	CTGAAG	1 cut(s)	305
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	3 cut(s)	173, 209, 483
AfiI	CCNNNNNNNGG	5 cut(s)	120, 217, 291, 1024, 1167
AgsI	TTSAA	4 cut(s)	305, 504, 905, 945
AhlI	ACTAGT	1 cut(s)	116
AjnI	CCWGG	4 cut(s)	31, 238, 276, 818
AleI	CACNNNNGTG	2 cut(s)	192, 1163
AluBI	AGCT	5 cut(s)	74, 548, 736, 749, 1054
AluI	AGCT	5 cut(s)	74, 548, 736, 749, 1054
Alw21I	GWGCWC	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	471, 678
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	3 cut(s)	196, 271, 309
ApeKI	GCWGC	3 cut(s)	74, 425, 746
ApoI	RAATTY	1 cut(s)	405
AspS9I	GGNCC	4 cut(s)	35, 271, 846, 913
AsuC2I	CCSGG	1 cut(s)	960
AsuHPI	GGTGA	4 cut(s)	233, 785, 815, 869
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	3 cut(s)	35, 846, 913
AxyI	CCTNAGG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	479
BalI	TGGCCA	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	1032
BarI	GAAGNNNNNNTAC	2 cut(s)	197, 229
Bbv12I	GWGCWC	1 cut(s)	301
BbvI	GCAGC	3 cut(s)	61, 437, 758
BccI	CCATC	4 cut(s)	71, 395, 414, 925
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 779, 813
BciT130I	CCWGG	4 cut(s)	33, 240, 278, 820
BciVI	GTATCC	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	960
BcoDI	GTCTC	1 cut(s)	359
BcuI	ACTAGT	1 cut(s)	116
BfaI	CTAG	6 cut(s)	12, 39, 117, 149, 549, 1207
BfmI	CTRYAG	1 cut(s)	1012
BfuI	GTATCC	1 cut(s)	865
BglII	AGATCT	1 cut(s)	1126
BisI	GCNGC	4 cut(s)	75, 426, 558, 747
BlsI	GCNGC	4 cut(s)	76, 427, 559, 748
Bme1390I	CCNGG	5 cut(s)	33, 240, 278, 820, 960
Bme18I	GGWCC	3 cut(s)	35, 846, 913
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	4 cut(s)	35, 271, 846, 913
BmiI	GGNNCC	6 cut(s)	556, 848, 914, 915, 1029, 1204
BmrFI	CCNGG	5 cut(s)	33, 240, 278, 820, 960
BmrI	ACTGGG	1 cut(s)	226
BmsI	GCATC	2 cut(s)	772, 862
BmuI	ACTGGG	1 cut(s)	226
Bpu10I	CCTNAGC	1 cut(s)	737
BpuMI	CCSGG	1 cut(s)	960
BsaBI	GATNNNNATC	2 cut(s)	462, 1125
BsaHI	GRCGYC	1 cut(s)	837
BsaJI	CCNNGG	5 cut(s)	238, 441, 769, 1161, 1188
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 217, 291, 1024, 1167
Bse1I	ACTGG	3 cut(s)	221, 485, 1178
Bse21I	CCTNAGG	1 cut(s)	290
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	2 cut(s)	462, 1125
BseBI	CCWGG	4 cut(s)	33, 240, 278, 820
BseDI	CCNNGG	5 cut(s)	238, 441, 769, 1161, 1188
BseGI	GGATG	2 cut(s)	853, 1198
BseJI	GATNNNNATC	2 cut(s)	462, 1125
BseLI	CCNNNNNNNGG	5 cut(s)	120, 217, 291, 1024, 1167
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	993, 1144
BseNI	ACTGG	3 cut(s)	221, 485, 1178
BseRI	GAGGAG	2 cut(s)	77, 567
BseSI	GKGCMC	1 cut(s)	479
BseXI	GCAGC	3 cut(s)	61, 437, 758
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	3 cut(s)	198, 273, 311
BsiHKAI	GWGCWC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	1 cut(s)	959
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	5 cut(s)	120, 217, 291, 1024, 1167
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	3 cut(s)	198, 273, 311
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	3 cut(s)	301, 479, 1032
Bsp143I	GATC	4 cut(s)	463, 586, 670, 1126
Bsp19I	CCATGG	2 cut(s)	441, 1188
BspACI	CCGC	2 cut(s)	558, 895
BspANI	GGCC	3 cut(s)	198, 273, 311
BspCNI	CTCAG	2 cut(s)	992, 1143
BspHI	TCATGA	2 cut(s)	1059, 1077
BspLI	GGNNCC	6 cut(s)	556, 848, 914, 915, 1029, 1204
BspPI	GGATC	2 cut(s)	471, 678
BsrBI	CCGCTC	1 cut(s)	560
BsrDI	GCAATG	1 cut(s)	78
BsrI	ACTGG	3 cut(s)	221, 485, 1178
BssECI	CCNNGG	5 cut(s)	238, 441, 769, 1161, 1188
BssMI	GATC	4 cut(s)	463, 586, 670, 1126
BssNI	GRCGYC	1 cut(s)	837
BssT1I	CCWWGG	4 cut(s)	441, 769, 1161, 1188
Bst2UI	CCWGG	4 cut(s)	33, 240, 278, 820
Bst4CI	ACNGT	2 cut(s)	481, 602
Bst6I	CTCTTC	3 cut(s)	95, 300, 1191
BstACI	GRCGYC	1 cut(s)	837
BstC8I	GCNNGC	2 cut(s)	158, 640
BstDEI	CTNAG	4 cut(s)	290, 737, 979, 1130
BstDSI	CCRYGG	2 cut(s)	441, 1188
BstF5I	GGATG	2 cut(s)	853, 1198
BstKTI	GATC	4 cut(s)	466, 589, 673, 1129
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	4 cut(s)	463, 586, 670, 1126
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 554
BstNI	CCWGG	4 cut(s)	33, 240, 278, 820
BstNSI	RCATGY	2 cut(s)	160, 794
BstSCI	CCNGG	5 cut(s)	31, 238, 276, 818, 958
BstSFI	CTRYAG	1 cut(s)	1012
BstSLI	GKGCMC	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	61, 437, 758
BstX2I	RGATCY	2 cut(s)	463, 1126
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	2 cut(s)	463, 1126
Bsu36I	CCTNAGG	1 cut(s)	290
BsuI	GTATCC	1 cut(s)	865
BsuRI	GGCC	3 cut(s)	198, 273, 311
BtgI	CCRYGG	2 cut(s)	441, 1188
BtsCI	GGATG	2 cut(s)	853, 1198
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 477
Cac8I	GCNNGC	2 cut(s)	158, 640
CciI	TCATGA	2 cut(s)	1059, 1077
Cfr13I	GGNCC	4 cut(s)	35, 271, 846, 913
CseI	GACGC	1 cut(s)	826
Csp6I	GTAC	3 cut(s)	172, 208, 482
CviQI	GTAC	3 cut(s)	172, 208, 482
DdeI	CTNAG	4 cut(s)	290, 737, 979, 1130
DpnI	GATC	4 cut(s)	465, 588, 672, 1128
DpnII	GATC	4 cut(s)	463, 586, 670, 1126
DraI	TTTAAA	1 cut(s)	1111
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	3 cut(s)	95, 300, 1191
EarI	CTCTTC	3 cut(s)	95, 300, 1191
Eco130I	CCWWGG	4 cut(s)	441, 769, 1161, 1188
Eco24I	GRGCYC	1 cut(s)	1032
Eco47I	GGWCC	3 cut(s)	35, 846, 913
Eco57I	CTGAAG	1 cut(s)	305
Eco81I	CCTNAGG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	881
EcoO109I	RGGNCCY	3 cut(s)	35, 846, 913
EcoRII	CCWGG	4 cut(s)	31, 238, 276, 818
EcoT14I	CCWWGG	4 cut(s)	441, 769, 1161, 1188
EcoT22I	ATGCAT	1 cut(s)	792
EcoT38I	GRGCYC	1 cut(s)	1032
ErhI	CCWWGG	4 cut(s)	441, 769, 1161, 1188
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	899
Fnu4HI	GCNGC	4 cut(s)	75, 426, 558, 747
FokI	GGATG	2 cut(s)	840, 1205
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	4 cut(s)	75, 426, 558, 747
FspBI	CTAG	6 cut(s)	12, 39, 117, 149, 549, 1207
GluI	GCNGC	4 cut(s)	75, 426, 558, 747
HaeIII	GGCC	3 cut(s)	198, 273, 311
HapII	CCGG	1 cut(s)	959
HgaI	GACGC	1 cut(s)	826
Hin1I	GRCGYC	1 cut(s)	837
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	3 cut(s)	254, 281, 446
HpaII	CCGG	1 cut(s)	959
HphI	GGTGA	4 cut(s)	233, 785, 815, 869
Hpy166II	GTNNAC	2 cut(s)	841, 865
Hpy188I	TCNGA	3 cut(s)	324, 412, 986
Hpy188III	TCNNGA	5 cut(s)	302, 345, 921, 1060, 1078
Hpy8I	GTNNAC	2 cut(s)	841, 865
Hpy99I	CGWCG	1 cut(s)	801
HpyAV	CCTTC	5 cut(s)	329, 351, 395, 563, 817
HpyCH4III	ACNGT	2 cut(s)	481, 602
HpyCH4IV	ACGT	1 cut(s)	1094
HpyCH4V	TGCA	9 cut(s)	69, 83, 263, 367, 638, 666, 746, 790, 853
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 554
HpyF3I	CTNAG	4 cut(s)	290, 737, 979, 1130
HpySE526I	ACGT	1 cut(s)	1094
Hsp92I	GRCGYC	1 cut(s)	837
KflI	GGGWCCC	1 cut(s)	913
Kzo9I	GATC	4 cut(s)	463, 586, 670, 1126
LmnI	GCTCC	2 cut(s)	554, 1027
Lsp1109I	GCAGC	3 cut(s)	61, 437, 758
LweI	GCATC	2 cut(s)	772, 862
MaeI	CTAG	6 cut(s)	12, 39, 117, 149, 549, 1207
MaeII	ACGT	1 cut(s)	1094
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	4 cut(s)	465, 588, 672, 1128
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	4 cut(s)	463, 586, 670, 1126
MboII	GAAGA	8 cut(s)	82, 93, 317, 425, 704, 1127, 1165, 1208
MflI	RGATCY	2 cut(s)	463, 1126
MhlI	GDGCHC	3 cut(s)	301, 479, 1032
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	7 cut(s)	228, 405, 489, 499, 693, 900, 992
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	3 cut(s)	263, 290, 440
MmeI	TCCRAC	1 cut(s)	522
Mox20I	TGGCCA	1 cut(s)	198
Mph1103I	ATGCAT	1 cut(s)	792
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	4 cut(s)	576, 620, 759, 1110
MslI	CAYNNNNRTG	4 cut(s)	192, 396, 858, 1163
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	2 cut(s)	749, 1054
MspI	CCGG	1 cut(s)	959
MspR9I	CCNGG	5 cut(s)	33, 240, 278, 820, 960
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	4 cut(s)	33, 240, 278, 820
MwoI	GCNNNNNNNGC	2 cut(s)	80, 554
NciI	CCSGG	1 cut(s)	960
NcoI	CCATGG	2 cut(s)	441, 1188
NdeII	GATC	4 cut(s)	463, 586, 670, 1126
NlaIV	GGNNCC	6 cut(s)	556, 848, 914, 915, 1029, 1204
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	792
NspI	RCATGY	2 cut(s)	160, 794
OliI	CACNNNNGTG	2 cut(s)	192, 1163
PaeI	GCATGC	1 cut(s)	160
PagI	TCATGA	2 cut(s)	1059, 1077
PctI	GAATGC	1 cut(s)	748
PflMI	CCANNNNNTGG	2 cut(s)	1024, 1167
PkrI	GCNGC	4 cut(s)	76, 427, 559, 748
PleI	GAGTC	3 cut(s)	262, 289, 440
PpsI	GAGTC	3 cut(s)	262, 289, 440
PpuMI	RGGWCCY	3 cut(s)	35, 846, 913
Psp1406I	AACGTT	1 cut(s)	1094
Psp5II	RGGWCCY	3 cut(s)	35, 846, 913
Psp6I	CCWGG	4 cut(s)	31, 238, 276, 818
PspGI	CCWGG	4 cut(s)	31, 238, 276, 818
PspN4I	GGNNCC	6 cut(s)	556, 848, 914, 915, 1029, 1204
PspPI	GGNCC	4 cut(s)	35, 271, 846, 913
PspPPI	RGGWCCY	3 cut(s)	35, 846, 913
PsuI	RGATCY	2 cut(s)	463, 1126
PvuII	CAGCTG	2 cut(s)	749, 1054
RsaI	GTAC	3 cut(s)	173, 209, 483
RsaNI	GTAC	3 cut(s)	172, 208, 482
RseI	CAYNNNNRTG	4 cut(s)	192, 396, 858, 1163
SaqAI	TTAA	4 cut(s)	576, 620, 759, 1110
SatI	GCNGC	4 cut(s)	75, 426, 558, 747
Sau3AI	GATC	4 cut(s)	463, 586, 670, 1126
Sau96I	GGNCC	4 cut(s)	35, 271, 846, 913
SchI	GAGTC	3 cut(s)	263, 290, 440
ScrFI	CCNGG	5 cut(s)	33, 240, 278, 820, 960
SduI	GDGCHC	3 cut(s)	301, 479, 1032
SfaNI	GCATC	2 cut(s)	772, 862
SfcI	CTRYAG	1 cut(s)	1012
SinI	GGWCC	3 cut(s)	35, 846, 913
SmiMI	CAYNNNNRTG	4 cut(s)	192, 396, 858, 1163
SpeI	ACTAGT	1 cut(s)	116
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	7 cut(s)	228, 405, 489, 499, 693, 900, 992
SsiI	CCGC	2 cut(s)	558, 895
SspMI	CTAG	6 cut(s)	12, 39, 117, 149, 549, 1207
StyD4I	CCNGG	5 cut(s)	31, 238, 276, 818, 958
StyI	CCWWGG	4 cut(s)	441, 769, 1161, 1188
TaaI	ACNGT	2 cut(s)	481, 602
TaiI	ACGT	1 cut(s)	1097
TaqI	TCGA	2 cut(s)	344, 673
TaqII	GACCGA	1 cut(s)	1161
TasI	AATT	7 cut(s)	228, 405, 489, 499, 693, 900, 992
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	560
Tru1I	TTAA	4 cut(s)	576, 620, 759, 1110
Tru9I	TTAA	4 cut(s)	576, 620, 759, 1110
TscAI	CASTG	2 cut(s)	254, 484
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	3 cut(s)	74, 425, 746
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	7 cut(s)	377, 551, 963, 993, 1048, 1087, 1209
TspRI	CASTG	2 cut(s)	254, 484
Van91I	CCANNNNNTGG	2 cut(s)	1024, 1167
VpaK11BI	GGWCC	3 cut(s)	35, 846, 913
XapI	RAATTY	1 cut(s)	405
XceI	RCATGY	2 cut(s)	160, 794
XspI	CTAG	6 cut(s)	12, 39, 117, 149, 549, 1207
Zsp2I	ATGCAT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.