AT2G41530

Serine hydrolase involved in the detoxification of formaldehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012329
Physical Location & Seq
Reverse (-)
17323367 .. 17325732
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41530.1

Sequence Viewer

Length: 855 bp
ATGGCGAGTGGACTAAGCGAGATCGGGAGCACGAAGATGTTCGATGGCTACAACAAAAGATACAAACACTTCAGTGAGACACTTGGATGTTCCATGACCTTTTCCATCTACTTCCCTCCTTCTGCTTCTTCTTCCCATAAATCTCCTGTGCTTTACTGGCTTTCTGGCCTCACCTGCACGGACGAGAACTTCATTATCAAATCAGGAGCTCAACGTGCTGCTTCTACTCACGGCATTGCTCTTGTTGCTCCAGACACTTCTCCAAGAGGACTAAATGTTGAAGGGGAGGCAGACAGTTACGACTTTGGTGTAGGAGCCGGATTCTACCTCAATGCTACTCAGGAAAAGTGGAAGAACTGGCGTATGTATGACTATGTTGTCAAAGAGTTGCCAAAACTCCTGAGTGAAAACTTTTCCCAGCTTGACACAACAAAAGCATCTATATCTGGACACTCCATGGGTGGACATGGAGCTCTTACTATATACCTGAGGAACCTCGATAAATACAAGTCTGTATCTGCGTTTGCACCAATCACGAATCCCATAAATTGTGCATGGGGACAGAAGGCATTCACCAATTATCTAGGTGACAACAAAGCTGCTTGGGAGGAATACGATGCCACTTGTCTTATTTCAAAGTACAACAATCTTTCTGCAACAATTCTAATTGATCAGGGAGAAAACGACCAGTTCTACCCTGATCAGTTATTGCCCAGCAAGTTTGAGGAGGCGTGCAAGAAAGTGAATGCACCGCTCTTATTGCGCCTCCATCCAGGATACGACCACTCCTACTATTTCATTGCCACCTTCATCGAAGACCACATTAGTCACCATGCTCAAGCCCTTGAGCTATAG

Protein Analysis

284

Amino Acids

31.66

Weight (kDa)

5.91

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Esterase PF00756 25 - 275 1.9e-61 Putative esterase
Peptidase_S9 PF00326 109 - 265 3.4e-10 Prolyl oligopeptidase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41530
fragaria_vesca FvH4_6g24520
malus_domestica MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis pycom12g06870 pycom14g06610
rosa_chinensis RchiOBHm_Chr3g0483631
rosa_laevigata RLG00000023263
rosa_multiflora Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii Rroxscaffold_6G00398170
rosa_rugosa Rorug03G0207500
rosa_samantha Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana Rw3G023120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
AasI GACNNNNNNGTC 1 cut(s) 377
Acc36I ACCTGC 1 cut(s) 182
AccBSI CCGCTC 1 cut(s) 754
AciI CCGC 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 55
AfaI GTAC 1 cut(s) 641
AgsI TTSAA 2 cut(s) 281, 636
AjnI CCWGG 1 cut(s) 772
AleI CACNNNNGTG 1 cut(s) 72
AluBI AGCT 5 cut(s) 209, 421, 473, 599, 850
AluI AGCT 5 cut(s) 209, 421, 473, 599, 850
Alw21I GWGCWC 3 cut(s) 32, 211, 475
Alw26I GTCTC 1 cut(s) 71
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 2 cut(s) 218, 599
Asp700I GAANNNNTTC 2 cut(s) 38, 569
AspLEI GCGC 1 cut(s) 765
AsuHPI GGTGA 4 cut(s) 163, 565, 599, 821
AxyI CCTNAGG 1 cut(s) 488
BanII GRGCYC 2 cut(s) 211, 475
BbsI GAAGAC 1 cut(s) 822
Bbv12I GWGCWC 3 cut(s) 32, 211, 475
BbvI GCAGC 2 cut(s) 205, 586
BccI CCATC 3 cut(s) 38, 113, 777
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 774
BciVI GTATCC 1 cut(s) 770
BclI TGATCA 2 cut(s) 670, 700
BcoDI GTCTC 1 cut(s) 71
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 1 cut(s) 851
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 770
BisI GCNGC 2 cut(s) 219, 600
BlsI GCNGC 2 cut(s) 220, 601
Bme1390I CCNGG 1 cut(s) 774
BmiI GGNNCC 2 cut(s) 316, 494
BmrFI CCNGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 446, 607
BpiI GAAGAC 1 cut(s) 822
BpmI CTGGAG 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 822
BsaJI CCNNGG 1 cut(s) 456
BsaXI ACNNNNNCTCC 2 cut(s) 770, 800
Bse1I ACTGG 3 cut(s) 161, 362, 688
Bse21I CCTNAGG 1 cut(s) 488
Bse3DI GCAATG 2 cut(s) 234, 798
BseBI CCWGG 1 cut(s) 774
BseDI CCNNGG 1 cut(s) 456
BseGI GGATG 2 cut(s) 92, 769
BseMI GCAATG 2 cut(s) 234, 798
BseMII CTCAG 3 cut(s) 353, 392, 479
BseNI ACTGG 3 cut(s) 161, 362, 688
BseRI GAGGAG 1 cut(s) 740
BseXI GCAGC 2 cut(s) 205, 586
BseYI CCCAGC 2 cut(s) 417, 713
BsgI GTGCAG 1 cut(s) 160
BshFI GGCC 1 cut(s) 168
BsiHKAI GWGCWC 3 cut(s) 32, 211, 475
BsiSI CCGG 1 cut(s) 318
BslFI GGGAC 1 cut(s) 573
BsmAI GTCTC 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 573
BsmI GAATGC 2 cut(s) 569, 751
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 32, 211, 475
Bsp143I GATC 3 cut(s) 21, 670, 700
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 1 cut(s) 752
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 3 cut(s) 352, 393, 480
BspLI GGNNCC 2 cut(s) 316, 494
BspMI ACCTGC 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 754
BsrDI GCAATG 2 cut(s) 234, 798
BsrI ACTGG 3 cut(s) 161, 362, 688
BssECI CCNNGG 1 cut(s) 456
BssMI GATC 3 cut(s) 21, 670, 700
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 774
Bst4CI ACNGT 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 733
BstDEI CTNAG 4 cut(s) 14, 339, 401, 488
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 92, 769
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 3 cut(s) 24, 673, 703
BstMAI GTCTC 1 cut(s) 71
BstMBI GATC 3 cut(s) 21, 670, 700
BstMWI GCNNNNNNNGC 5 cut(s) 157, 174, 215, 245, 760
BstNI CCWGG 1 cut(s) 774
BstSCI CCNGG 1 cut(s) 772
BstSFI CTRYAG 1 cut(s) 851
BstV1I GCAGC 2 cut(s) 205, 586
BstV2I GAAGAC 1 cut(s) 822
Bsu36I CCTNAGG 1 cut(s) 488
BsuI GTATCC 1 cut(s) 770
BsuRI GGCC 1 cut(s) 168
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 2 cut(s) 92, 769
BtsIMutI CAGTG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 733
CfoI GCGC 1 cut(s) 765
Csp6I GTAC 1 cut(s) 640
CviAII CATG 5 cut(s) 94, 457, 467, 555, 833
CviQI GTAC 1 cut(s) 640
DdeI CTNAG 4 cut(s) 14, 339, 401, 488
DpnI GATC 3 cut(s) 23, 672, 702
DpnII GATC 3 cut(s) 21, 670, 700
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Ecl136II GAGCTC 2 cut(s) 209, 473
Eco130I CCWWGG 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 211, 475
Eco53kI GAGCTC 2 cut(s) 209, 473
Eco57I CTGAAG 1 cut(s) 55
Eco81I CCTNAGG 1 cut(s) 488
EcoICRI GAGCTC 2 cut(s) 209, 473
EcoRII CCWGG 1 cut(s) 772
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 211, 475
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 5 cut(s) 97, 460, 470, 558, 836
FaqI GGGAC 1 cut(s) 573
FatI CATG 5 cut(s) 93, 456, 466, 554, 832
FbaI TGATCA 2 cut(s) 670, 700
Fnu4HI GCNGC 2 cut(s) 219, 600
FokI GGATG 2 cut(s) 99, 756
FriOI GRGCYC 2 cut(s) 211, 475
Fsp4HI GCNGC 2 cut(s) 219, 600
FspBI CTAG 1 cut(s) 584
GlaI GCGC 1 cut(s) 764
GluI GCNGC 2 cut(s) 219, 600
GsaI CCCAGC 2 cut(s) 421, 717
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 318
HhaI GCGC 1 cut(s) 765
Hin1II CATG 5 cut(s) 97, 460, 470, 558, 836
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HinfI GANTC 2 cut(s) 321, 538
HpaII CCGG 1 cut(s) 318
HphI GGTGA 4 cut(s) 163, 565, 599, 821
Hpy166II GTNNAC 2 cut(s) 11, 464
Hpy188III TCNNGA 7 cut(s) 25, 204, 251, 341, 400, 447, 535
Hpy8I GTNNAC 2 cut(s) 11, 464
HpyAV CCTTC 4 cut(s) 129, 275, 559, 817
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 6 cut(s) 177, 527, 554, 656, 735, 749
HpyF10VI GCNNNNNNNGC 5 cut(s) 157, 174, 215, 245, 760
HpyF3I CTNAG 4 cut(s) 14, 339, 401, 488
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 5 cut(s) 97, 460, 470, 558, 836
HspAI GCGC 1 cut(s) 763
Ksp22I TGATCA 2 cut(s) 670, 700
Kzo9I GATC 3 cut(s) 21, 670, 700
LmnI GCTCC 5 cut(s) 27, 206, 253, 314, 470
Lsp1109I GCAGC 2 cut(s) 205, 586
LweI GCATC 2 cut(s) 446, 607
MaeI CTAG 1 cut(s) 584
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 3 cut(s) 296, 587, 827
MalI GATC 3 cut(s) 23, 672, 702
MbiI CCGCTC 1 cut(s) 754
MboI GATC 3 cut(s) 21, 670, 700
MboII GAAGA 5 cut(s) 46, 120, 123, 364, 827
MhlI GDGCHC 3 cut(s) 32, 211, 475
MluCI AATT 4 cut(s) 547, 577, 660, 666
MroXI GAANNNNTTC 2 cut(s) 38, 569
MslI CAYNNNNRTG 3 cut(s) 35, 72, 85
MspI CCGG 1 cut(s) 318
MspR9I CCNGG 1 cut(s) 774
Mva1269I GAATGC 2 cut(s) 569, 751
MvaI CCWGG 1 cut(s) 774
MwoI GCNNNNNNNGC 5 cut(s) 157, 174, 215, 245, 760
NcoI CCATGG 1 cut(s) 456
NdeII GATC 3 cut(s) 21, 670, 700
NlaIII CATG 5 cut(s) 97, 460, 470, 558, 836
NlaIV GGNNCC 2 cut(s) 316, 494
NmuCI GTSAC 2 cut(s) 587, 827
OliI CACNNNNGTG 1 cut(s) 72
PaqCI CACCTGC 1 cut(s) 182
PctI GAATGC 2 cut(s) 569, 751
PdmI GAANNNNTTC 2 cut(s) 38, 569
PfeI GAWTC 2 cut(s) 321, 538
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 2 cut(s) 220, 601
Psp124BI GAGCTC 2 cut(s) 211, 475
Psp6I CCWGG 1 cut(s) 772
PspFI CCCAGC 2 cut(s) 417, 713
PspGI CCWGG 1 cut(s) 772
PspN4I GGNNCC 2 cut(s) 316, 494
RsaI GTAC 1 cut(s) 641
RsaNI GTAC 1 cut(s) 640
RseI CAYNNNNRTG 3 cut(s) 35, 72, 85
SacI GAGCTC 2 cut(s) 211, 475
SatI GCNGC 2 cut(s) 219, 600
Sau3AI GATC 3 cut(s) 21, 670, 700
ScrFI CCNGG 1 cut(s) 774
SduI GDGCHC 3 cut(s) 32, 211, 475
SfaNI GCATC 2 cut(s) 446, 607
SfcI CTRYAG 1 cut(s) 851
SmiMI CAYNNNNRTG 3 cut(s) 35, 72, 85
SmlI CTYRAG 2 cut(s) 837, 845
SmoI CTYRAG 2 cut(s) 837, 845
Sse9I AATT 4 cut(s) 547, 577, 660, 666
SsiI CCGC 1 cut(s) 752
SspMI CTAG 1 cut(s) 584
SstI GAGCTC 2 cut(s) 211, 475
StyD4I CCNGG 1 cut(s) 772
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 217
TaqI TCGA 3 cut(s) 42, 498, 813
TasI AATT 4 cut(s) 547, 577, 660, 666
TatI WGTACW 1 cut(s) 639
TfiI GAWTC 2 cut(s) 321, 538
TscAI CASTG 1 cut(s) 79
TseFI GTSAC 2 cut(s) 587, 827
TseI GCWGC 2 cut(s) 218, 599
Tsp45I GTSAC 2 cut(s) 587, 827
TspDTI ATGAA 3 cut(s) 181, 787, 799
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 79
XmnI GAANNNNTTC 2 cut(s) 38, 569
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.