Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012329

Physical Location & Seq

Genomic Coordinates Forward (+)

7114632 .. 7119547

Gene Structure 4916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g06870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGAAACTGACACTCGGAGAAAGCTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATGGAGACGAAGCCGAATGAGATCAGCAGCTCGAAGATGTTCGGAGGGTACAACAAGAGATACAAGCATTTCAGCCCTACGCTCGGCTGCTCCATGACCTTCCACATCTACTTTCCTCCTTCCCCTTCCCCTTCCCACCGATTCCCTGTACTTTACTGGCTCTCTGGCCTTACCTGCACAGATGAGAATTTTATAACTAAATCAGGAGCTCAACGTGTTGCCTCAAGTGAGGGTGTTGCTCTGATTGCCCCTGATACATCTCCAAGAGGCTTGTCTATAGAAGGAGAGGCGGATAGCTGGGATTTTGGTGTAGGTGCTGGATTTTATCTCAACGCTACTGAAGAAAAATGGAAGAACTGGCGCATGTACGACTATGTTGTTAAGGAGTTGCCACAACTTCTGAATGAAAATTTTTCACAGCTTGATACATCGCGGGCATCTATATCTGGTCATTCTATGGGTGGGCACGGTGCTTTGACAATTTACCTGAAAAACCTGGATAAATATAAGTCAGTATCTGCCTTTGCACCCATTGTGAATCCTGCAAACTGTCCATGGGGCCAGAAAGCTTTTTCAAATTATCTAGGTGGCAATAAAACCGATTGGGAAGAATATGATGCCACTTCCCTTGTTAAGAAGTTTAAGGATGTGTCAGTTACCATTTTAATTGATCAGGGGGAAGATGATAAATTCTTGCACGATCAGTTGATGCCACACAAGTTTGAAGATGCATGTCGGAGTGTTGAAGTTCCACTCCTTTTGCGATTGCAGCCCGGTTATGATCACTCATACTATTTTATTGCCACCTTCATCGATGATCACATCCGTCACCATGCTCAAGCTCTTAATCTACCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0008150 GO:0010035 GO:0010038 GO:0016787 GO:0016788 GO:0016790 GO:0018738 GO:0042221 GO:0046686 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00680 ko01120 ko01200 map00680 map01120 map01200

Pfam Domains

Protein Families

Esterase

Protein Analysis

308

Amino Acids

34.91

Weight (kDa)

5.89

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41530
fragaria_vesca	FvH4_6g24520
malus_domestica	MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica	Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis	pycom12g06870 pycom14g06610
rosa_chinensis	RchiOBHm_Chr3g0483631
rosa_laevigata	RLG00000023263
rosa_multiflora	Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii	Rroxscaffold_6G00398170
rosa_rugosa	Rorug03G0207500
rosa_samantha	Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana	Rw3G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	248
AccII	CGCG	1 cut(s)	499
AciI	CCGC	2 cut(s)	356, 499
AcsI	RAATTY	3 cut(s)	253, 475, 755
AcuI	CTGAAG	1 cut(s)	426
AfaI	GTAC	3 cut(s)	116, 216, 434
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	280
AgsI	TTSAA	3 cut(s)	642, 791, 812
AjnI	CCWGG	1 cut(s)	561
AluBI	AGCT	7 cut(s)	24, 96, 275, 363, 487, 635, 908
AluI	AGCT	7 cut(s)	24, 96, 275, 363, 487, 635, 908
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	584
AoxI	GGCC	2 cut(s)	232, 625
ApeKI	GCWGC	3 cut(s)	93, 153, 835
ApoI	RAATTY	3 cut(s)	253, 475, 755
Asp700I	GAANNNNTTC	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	1 cut(s)	625
AsuC2I	CCSGG	1 cut(s)	840
AsuHPI	GGTGA	1 cut(s)	887
BaeGI	GKGCMC	1 cut(s)	534
BanII	GRGCYC	1 cut(s)	277
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	3 cut(s)	105, 140, 847
BciT130I	CCWGG	1 cut(s)	563
BclI	TGATCA	3 cut(s)	736, 847, 883
BcnI	CCSGG	1 cut(s)	840
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	650
BfmI	CTRYAG	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	248
BisI	GCNGC	3 cut(s)	94, 154, 836
BlsI	GCNGC	3 cut(s)	95, 155, 837
Bme1390I	CCNGG	2 cut(s)	563, 840
BmgT120I	GGNCC	1 cut(s)	625
BmiI	GGNNCC	1 cut(s)	626
BmrFI	CCNGG	2 cut(s)	563, 840
BmsI	GCATC	4 cut(s)	512, 673, 765, 784
BpuEI	CTTGAG	2 cut(s)	274, 888
BpuMI	CCSGG	1 cut(s)	840
Bsa29I	ATCGAT	1 cut(s)	879
BsaJI	CCNNGG	1 cut(s)	620
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	2 cut(s)	227, 428
BseBI	CCWGG	1 cut(s)	563
BseCI	ATCGAT	1 cut(s)	879
BseDI	CCNNGG	1 cut(s)	620
BseGI	GGATG	2 cut(s)	718, 888
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	2 cut(s)	227, 428
BseSI	GKGCMC	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	105, 140, 847
BseYI	CCCAGC	1 cut(s)	363
BsgI	GTGCAG	1 cut(s)	226
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	234, 627
BshVI	ATCGAT	1 cut(s)	879
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	840
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	65
BsmBI	CGTCTC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	234, 627
Bsp1286I	GDGCHC	2 cut(s)	277, 534
Bsp143I	GATC	5 cut(s)	87, 736, 766, 847, 883
Bsp19I	CCATGG	1 cut(s)	620
BspACI	CCGC	2 cut(s)	356, 499
BspANI	GGCC	2 cut(s)	234, 627
BspCNI	CTCAG	1 cut(s)	38
BspDI	ATCGAT	1 cut(s)	879
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	1 cut(s)	626
BspMI	ACCTGC	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	227, 428
BssECI	CCNNGG	1 cut(s)	620
BssMI	GATC	5 cut(s)	87, 736, 766, 847, 883
BssT1I	CCWWGG	1 cut(s)	620
Bst2UI	CCWGG	1 cut(s)	563
Bst4CI	ACNGT	3 cut(s)	536, 617, 921
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	25
BstDSI	CCRYGG	1 cut(s)	620
BstF5I	GGATG	2 cut(s)	718, 888
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	5 cut(s)	90, 739, 769, 850, 886
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	5 cut(s)	87, 736, 766, 847, 883
BstMWI	GCNNNNNNNGC	3 cut(s)	240, 311, 835
BstNI	CCWGG	1 cut(s)	563
BstNSI	RCATGY	2 cut(s)	433, 801
BstSCI	CCNGG	2 cut(s)	561, 838
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	534
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	105, 140, 847
Bsu15I	ATCGAT	1 cut(s)	879
BsuRI	GGCC	2 cut(s)	234, 627
BsuTUI	ATCGAT	1 cut(s)	879
BtgI	CCRYGG	1 cut(s)	620
BtgZI	GCGATG	1 cut(s)	480
BtsCI	GGATG	2 cut(s)	718, 888
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	501
CaiI	CAGNNNCTG	1 cut(s)	584
CfoI	GCGC	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	625
ClaI	ATCGAT	1 cut(s)	879
Csp6I	GTAC	3 cut(s)	115, 215, 433
CspCI	CAANNNNNGTGG	4 cut(s)	676, 711, 807, 842
CviAII	CATG	5 cut(s)	160, 430, 621, 798, 899
CviQI	GTAC	3 cut(s)	115, 215, 433
DdeI	CTNAG	1 cut(s)	25
DpnI	GATC	5 cut(s)	89, 738, 768, 849, 885
DpnII	GATC	5 cut(s)	87, 736, 766, 847, 883
EciI	GGCGGA	1 cut(s)	371
Ecl136II	GAGCTC	1 cut(s)	275
Eco130I	CCWWGG	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	275
Eco57I	CTGAAG	1 cut(s)	426
EcoICRI	GAGCTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	561
EcoT14I	CCWWGG	1 cut(s)	620
EcoT22I	ATGCAT	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	65
FaeI	CATG	5 cut(s)	163, 433, 624, 801, 902
FatI	CATG	5 cut(s)	159, 429, 620, 797, 898
FauI	CCCGC	1 cut(s)	492
FbaI	TGATCA	3 cut(s)	736, 847, 883
Fnu4HI	GCNGC	3 cut(s)	94, 154, 836
FokI	GGATG	2 cut(s)	725, 875
FriOI	GRGCYC	1 cut(s)	277
Fsp4HI	GCNGC	3 cut(s)	94, 154, 836
FspBI	CTAG	1 cut(s)	650
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	3 cut(s)	94, 154, 836
GsaI	CCCAGC	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	234, 627
HapII	CCGG	1 cut(s)	840
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	5 cut(s)	163, 433, 624, 801, 902
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	633
HinfI	GANTC	2 cut(s)	207, 604
HpaII	CCGG	1 cut(s)	840
HphI	GGTGA	1 cut(s)	887
Hpy188I	TCNGA	6 cut(s)	17, 28, 110, 309, 468, 804
Hpy188III	TCNNGA	1 cut(s)	270
HpyAV	CCTTC	6 cut(s)	175, 195, 201, 207, 341, 883
HpyCH4III	ACNGT	3 cut(s)	536, 617, 921
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	6 cut(s)	243, 593, 611, 763, 797, 835
HpyF10VI	GCNNNNNNNGC	3 cut(s)	240, 311, 835
HpyF3I	CTNAG	1 cut(s)	25
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	5 cut(s)	163, 433, 624, 801, 902
HspAI	GCGC	1 cut(s)	427
Ksp22I	TGATCA	3 cut(s)	736, 847, 883
Kzo9I	GATC	5 cut(s)	87, 736, 766, 847, 883
LmnI	GCTCC	2 cut(s)	161, 272
Lsp1109I	GCAGC	3 cut(s)	105, 140, 847
LweI	GCATC	4 cut(s)	512, 673, 765, 784
MaeI	CTAG	1 cut(s)	650
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	2 cut(s)	721, 893
MalI	GATC	5 cut(s)	89, 738, 768, 849, 885
MboI	GATC	5 cut(s)	87, 736, 766, 847, 883
MboII	GAAGA	6 cut(s)	112, 419, 430, 686, 758, 803
MhlI	GDGCHC	2 cut(s)	277, 534
MluCI	AATT	6 cut(s)	253, 475, 546, 643, 732, 755
MmeI	TCCRAC	1 cut(s)	782
MnlI	CCTC	6 cut(s)	104, 192, 289, 298, 326, 346
Mph1103I	ATGCAT	1 cut(s)	799
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	5 cut(s)	447, 699, 708, 731, 912
MspI	CCGG	1 cut(s)	840
MspR9I	CCNGG	2 cut(s)	563, 840
MvaI	CCWGG	1 cut(s)	563
MvnI	CGCG	1 cut(s)	499
MwoI	GCNNNNNNNGC	3 cut(s)	240, 311, 835
NciI	CCSGG	1 cut(s)	840
NcoI	CCATGG	1 cut(s)	620
NdeII	GATC	5 cut(s)	87, 736, 766, 847, 883
NlaIII	CATG	5 cut(s)	163, 433, 624, 801, 902
NlaIV	GGNNCC	1 cut(s)	626
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	893
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	2 cut(s)	433, 801
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	207, 604
PkrI	GCNGC	3 cut(s)	95, 155, 837
PsiI	TTATAA	1 cut(s)	260
Psp124BI	GAGCTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	561
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	561
PspN4I	GGNNCC	1 cut(s)	626
PspPI	GGNCC	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	116, 216, 434
RsaNI	GTAC	3 cut(s)	115, 215, 433
SacI	GAGCTC	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	447, 699, 708, 731, 912
SatI	GCNGC	3 cut(s)	94, 154, 836
Sau3AI	GATC	5 cut(s)	87, 736, 766, 847, 883
Sau96I	GGNCC	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	563, 840
SduI	GDGCHC	2 cut(s)	277, 534
SfaNI	GCATC	4 cut(s)	512, 673, 765, 784
SfcI	CTRYAG	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	289, 903
SmoI	CTYRAG	2 cut(s)	289, 903
Sse9I	AATT	6 cut(s)	253, 475, 546, 643, 732, 755
SsiI	CCGC	2 cut(s)	356, 499
SspMI	CTAG	1 cut(s)	650
SstI	GAGCTC	1 cut(s)	277
StyD4I	CCNGG	2 cut(s)	561, 838
StyI	CCWWGG	1 cut(s)	620
TaaI	ACNGT	3 cut(s)	536, 617, 921
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	98, 879
TasI	AATT	6 cut(s)	253, 475, 546, 643, 732, 755
TatI	WGTACW	1 cut(s)	214
TfiI	GAWTC	2 cut(s)	207, 604
Tru1I	TTAA	5 cut(s)	447, 699, 708, 731, 912
Tru9I	TTAA	5 cut(s)	447, 699, 708, 731, 912
TseFI	GTSAC	1 cut(s)	893
TseI	GCWGC	3 cut(s)	93, 153, 835
Tsp45I	GTSAC	1 cut(s)	893
TspDTI	ATGAA	3 cut(s)	17, 486, 865
TspGWI	ACGGA	1 cut(s)	881
XapI	RAATTY	3 cut(s)	253, 475, 755
XceI	RCATGY	2 cut(s)	433, 801
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	650
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.