Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012329

Physical Location & Seq

Genomic Coordinates Forward (+)

10033606 .. 10041609

Gene Structure 8004 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1082500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGACGAAGCCGAATGAGATCAGCCGCTCGAAGATGTTCGGAGGGTACAACAAGAGGTACAAGCATTTCAGCCTTACGCTCGGCTGCTCCATGACCTTCCACATCTACTTTCCTCCTTCTCCTTCCCTTTCCCACCGATTCCCTGTACTTTACTGGCTCTCTGGCCTTACCTGCACAGATGAGAATTTTATAACTAAATCAGGAGCTCAATGTGTTGCCTCAAGTGAGGGTGTTGCTCTGATTGCCCCTGATACATCTCCAAGAGGCTTGTCTATAGAAGGAGAGGCGGATAGCTGGGATTTTGGTGTAGGTGCTAGATTTTATCTCAACGCTACTCAAGAGAAATGGAAGAACTGGCGCATGTACGACTATGTTGTCAAGGAGTTGCCACAGCTTCTGAATGAAATTTTTTCACAGCTTGATACATCGCGGGCATCTATATCTGGTCATTCTATGGGTGGGCACGGTGCTTTGACAATTTACCTGAAAAACCTGGATAAATATAAGTCGGTATCTGCCTTTGCACCCATTGTGAATCCTGCAAACTGTCCATGGGGCCAGAAAGCTTTCTCAAATTATCTAGGTGGTAATAAAACCGATTGGGAAGAATATGATGCCACTTCCCTTGTTAAGAAGTTTAATGATGTGTCAGCTACCATTTTAATTGATCAAGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0008150 GO:0010035 GO:0010038 GO:0016787 GO:0016788 GO:0016790 GO:0018738 GO:0042221 GO:0046686 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00680 ko01120 ko01200 map00680 map01120 map01200

Pfam Domains

Protein Families

Esterase

Protein Analysis

228

Amino Acids

25.41

Weight (kDa)

6.51

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Esterase	PF00756	26 - 213	1.2e-47	Putative esterase
Peptidase_S9	PF00326	109 - 216	7.8e-06	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41530
fragaria_vesca	FvH4_6g24520
malus_domestica	MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica	Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis	pycom12g06870 pycom14g06610
rosa_chinensis	RchiOBHm_Chr3g0483631
rosa_laevigata	RLG00000023263
rosa_multiflora	Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii	Rroxscaffold_6G00398170
rosa_rugosa	Rorug03G0207500
rosa_samantha	Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana	Rw3G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
AasI	GACNNNNNNGTC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	30
AccII	CGCG	1 cut(s)	433
AciI	CCGC	3 cut(s)	28, 290, 433
AcsI	RAATTY	2 cut(s)	187, 408
AfaI	GTAC	4 cut(s)	50, 62, 150, 368
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	6 cut(s)	209, 297, 397, 421, 569, 656
AluI	AGCT	6 cut(s)	209, 297, 397, 421, 569, 656
Alw21I	GWGCWC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	166, 559
ApeKI	GCWGC	1 cut(s)	87
ApoI	RAATTY	2 cut(s)	187, 408
Asp700I	GAANNNNTTC	2 cut(s)	38, 569
AspLEI	GCGC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	468
BanII	GRGCYC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	497
BclI	TGATCA	1 cut(s)	670
BfaI	CTAG	2 cut(s)	318, 584
BfmI	CTRYAG	1 cut(s)	276
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	2 cut(s)	28, 88
BlsI	GCNGC	2 cut(s)	29, 89
Bme1390I	CCNGG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	560
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	2 cut(s)	446, 607
BpuEI	CTTGAG	2 cut(s)	208, 324
BsaJI	CCNNGG	1 cut(s)	554
Bse1I	ACTGG	2 cut(s)	161, 362
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	554
BseNI	ACTGG	2 cut(s)	161, 362
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	433
BshFI	GGCC	2 cut(s)	168, 561
BsiHKAI	GWGCWC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	168, 561
Bsp1286I	GDGCHC	2 cut(s)	211, 468
Bsp143I	GATC	2 cut(s)	21, 670
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	3 cut(s)	28, 290, 433
BspANI	GGCC	2 cut(s)	168, 561
BspFNI	CGCG	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	560
BspMI	ACCTGC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	161, 362
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	2 cut(s)	21, 670
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	497
Bst4CI	ACNGT	2 cut(s)	470, 551
BstC8I	GCNNGC	1 cut(s)	435
BstDSI	CCRYGG	1 cut(s)	554
BstFNI	CGCG	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	363
BstKTI	GATC	2 cut(s)	24, 673
BstMBI	GATC	2 cut(s)	21, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	174, 245
BstNI	CCWGG	1 cut(s)	497
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	1 cut(s)	495
BstSFI	CTRYAG	1 cut(s)	276
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	168, 561
BtgI	CCRYGG	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	559
Csp6I	GTAC	4 cut(s)	49, 61, 149, 367
CspCI	CAANNNNNGTGG	2 cut(s)	610, 645
CviAII	CATG	3 cut(s)	94, 364, 555
CviQI	GTAC	4 cut(s)	49, 61, 149, 367
DpnI	GATC	2 cut(s)	23, 672
DpnII	GATC	2 cut(s)	21, 670
DrdI	GACNNNNNNGTC	1 cut(s)	377
DseDI	GACNNNNNNGTC	1 cut(s)	377
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	1 cut(s)	211
Eco53kI	GAGCTC	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	3 cut(s)	97, 367, 558
FatI	CATG	3 cut(s)	93, 363, 554
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	670
Fnu4HI	GCNGC	2 cut(s)	28, 88
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	2 cut(s)	28, 88
FspBI	CTAG	2 cut(s)	318, 584
GlaI	GCGC	1 cut(s)	362
GluI	GCNGC	2 cut(s)	28, 88
GsaI	CCCAGC	1 cut(s)	301
HaeIII	GGCC	2 cut(s)	168, 561
HhaI	GCGC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	97, 367, 558
Hin6I	GCGC	1 cut(s)	361
HinP1I	GCGC	1 cut(s)	361
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	2 cut(s)	141, 538
Hpy188I	TCNGA	3 cut(s)	44, 243, 402
Hpy188III	TCNNGA	3 cut(s)	204, 341, 674
HpyAV	CCTTC	4 cut(s)	109, 129, 135, 275
HpyCH4III	ACNGT	2 cut(s)	470, 551
HpyCH4V	TGCA	3 cut(s)	177, 527, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	174, 245
Hsp92II	CATG	3 cut(s)	97, 367, 558
HspAI	GCGC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	21, 670
LmnI	GCTCC	2 cut(s)	95, 206
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	2 cut(s)	446, 607
MaeI	CTAG	2 cut(s)	318, 584
MalI	GATC	2 cut(s)	23, 672
MbiI	CCGCTC	1 cut(s)	30
MboI	GATC	2 cut(s)	21, 670
MboII	GAAGA	3 cut(s)	46, 364, 620
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	2 cut(s)	211, 468
MluCI	AATT	6 cut(s)	187, 408, 480, 577, 666, 679
MnlI	CCTC	7 cut(s)	38, 51, 126, 223, 232, 260, 280
MroXI	GAANNNNTTC	2 cut(s)	38, 569
MseI	TTAA	3 cut(s)	633, 642, 665
MspR9I	CCNGG	1 cut(s)	497
MunI	CAATTG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	497
MvnI	CGCG	1 cut(s)	433
MwoI	GCNNNNNNNGC	2 cut(s)	174, 245
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	21, 670
NlaIII	CATG	3 cut(s)	97, 367, 558
NlaIV	GGNNCC	1 cut(s)	560
NmeAIII	GCCGAG	1 cut(s)	63
NspI	RCATGY	1 cut(s)	367
PdmI	GAANNNNTTC	2 cut(s)	38, 569
PfeI	GAWTC	2 cut(s)	141, 538
PkrI	GCNGC	2 cut(s)	29, 89
PsiI	TTATAA	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	560
PspPI	GGNCC	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	4 cut(s)	50, 62, 150, 368
RsaNI	GTAC	4 cut(s)	49, 61, 149, 367
SacI	GAGCTC	1 cut(s)	211
SaqAI	TTAA	3 cut(s)	633, 642, 665
SatI	GCNGC	2 cut(s)	28, 88
Sau3AI	GATC	2 cut(s)	21, 670
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	211, 468
SfaNI	GCATC	2 cut(s)	446, 607
SfcI	CTRYAG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	223, 339
SmoI	CTYRAG	2 cut(s)	223, 339
Sse9I	AATT	6 cut(s)	187, 408, 480, 577, 666, 679
SsiI	CCGC	3 cut(s)	28, 290, 433
SspMI	CTAG	2 cut(s)	318, 584
SstI	GAGCTC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	495
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	2 cut(s)	470, 551
TaqI	TCGA	1 cut(s)	32
TasI	AATT	6 cut(s)	187, 408, 480, 577, 666, 679
TatI	WGTACW	1 cut(s)	148
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	141, 538
Tru1I	TTAA	3 cut(s)	633, 642, 665
Tru9I	TTAA	3 cut(s)	633, 642, 665
TseI	GCWGC	1 cut(s)	87
TspDTI	ATGAA	1 cut(s)	420
XapI	RAATTY	2 cut(s)	187, 408
XceI	RCATGY	1 cut(s)	367
XmnI	GAANNNNTTC	2 cut(s)	38, 569
XspI	CTAG	2 cut(s)	318, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.