Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000555.1

Orthogroup ID

OG0012329

Physical Location & Seq

Genomic Coordinates Reverse (-)

15919 .. 22614

Gene Structure 6696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000555.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atggaggagtgtaagcccactgagatcagcagctcaaagatgtttggagggtacaacaagagatacaagcatttcagtcctacactgggctgctccatgaccttccacatctattttcctccttctccttccccttcccacaaattccccgttctttactggctctctggccttacctgcacagatgagaattttataaccaaatcaggcgctcagcgttctgcagcaaaggagggtattgctttgattgcccctgatacatctcctagaggcttatctattgaaggagaagcagatagctgggattttggtgtaggtgctggattttatctcaatgctacccaggagaaatggaagaactggcgtatgtatgattatgttgtcaaggagttacccaaacttctgaatgaaaattttccacagcttgatacattgcgggcatgtatatctggtcactcaatgggtggacatggtgctttgacaatctacctgaaaaacctagacaaatataagtcagtatctgccttctcaccaattgtgaatcctatcaactgcccatggggtcagaaagctttctcaaattatctaggtggcagtaaagctgactgggaggaatatgatgccacttgcctagttaagaagtttaatgatgtgtcagccaccattttaattgatcagggggaggatgacaaattcttgcatgatcagctactaccacataagtttgcagaggcatgcagcagtgctaaagttccacttctactgcgtacccagcccggttatgatcactcgtactatttcattgctaccttcatagacgatcacatcagtcaccatgctcaagctgttaaactgcctacaccaccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0008150 GO:0010035 GO:0010038 GO:0016787 GO:0016788 GO:0016790 GO:0018738 GO:0042221 GO:0046686 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00680 ko01120 ko01200 map00680 map01120 map01200

Pfam Domains

Protein Families

Esterase

Protein Analysis

289

Amino Acids

32.34

Weight (kDa)

6.41

Isoelectric Point (pI)

51.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41530
fragaria_vesca	FvH4_6g24520
malus_domestica	MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica	Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis	pycom12g06870 pycom14g06610
rosa_chinensis	RchiOBHm_Chr3g0483631
rosa_laevigata	RLG00000023263
rosa_multiflora	Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii	Rroxscaffold_6G00398170
rosa_rugosa	Rorug03G0207500
rosa_samantha	Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana	Rw3G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	185
AciI	CCGC	1 cut(s)	436
AcsI	RAATTY	4 cut(s)	143, 190, 412, 692
AfaI	GTAC	3 cut(s)	53, 769, 794
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	1 cut(s)	342
AluBI	AGCT	7 cut(s)	33, 300, 424, 572, 602, 709, 845
AluI	AGCT	7 cut(s)	33, 300, 424, 572, 602, 709, 845
AlwNI	CAGNNNCTG	1 cut(s)	521
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	30, 90, 224, 738
ApoI	RAATTY	4 cut(s)	143, 190, 412, 692
Asp700I	GAANNNNTTC	2 cut(s)	414, 572
AspLEI	GCGC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	2 cut(s)	522, 824
BbvI	GCAGC	4 cut(s)	42, 77, 236, 750
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	3 cut(s)	673, 703, 784
BcnI	CCSGG	1 cut(s)	777
BfaI	CTAG	4 cut(s)	267, 500, 587, 632
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	4 cut(s)	31, 91, 225, 739
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	4 cut(s)	32, 92, 226, 740
Bme1390I	CCNGG	2 cut(s)	344, 777
BmrFI	CCNGG	2 cut(s)	344, 777
BmrI	ACTGGG	2 cut(s)	95, 616
BmsI	GCATC	1 cut(s)	610
BmuI	ACTGGG	2 cut(s)	95, 616
Bpu1102I	GCTNAGC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	825
BpuMI	CCSGG	1 cut(s)	777
BsaJI	CCNNGG	2 cut(s)	342, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	90, 164, 365, 611
Bse3DI	GCAATG	2 cut(s)	431, 801
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	2 cut(s)	342, 557
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	2 cut(s)	431, 801
BseMII	CTCAG	2 cut(s)	12, 227
BseNI	ACTGG	4 cut(s)	90, 164, 365, 611
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	42, 77, 236, 750
BseYI	CCCAGC	2 cut(s)	300, 771
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	777
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	5 cut(s)	24, 673, 703, 784, 820
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	1 cut(s)	436
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	13, 226
BspMAI	CTGCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	185
BsrDI	GCAATG	2 cut(s)	431, 801
BsrI	ACTGG	4 cut(s)	90, 164, 365, 611
BssECI	CCNNGG	2 cut(s)	342, 557
BssMI	GATC	5 cut(s)	24, 673, 703, 784, 820
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	1 cut(s)	344
BstC8I	GCNNGC	2 cut(s)	438, 736
BstDEI	CTNAG	2 cut(s)	21, 213
BstDSI	CCRYGG	1 cut(s)	557
BstF5I	GGATG	1 cut(s)	691
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	5 cut(s)	27, 676, 706, 787, 823
BstMBI	GATC	5 cut(s)	24, 673, 703, 784, 820
BstMWI	GCNNNNNNNGC	4 cut(s)	177, 248, 706, 772
BstNI	CCWGG	1 cut(s)	344
BstNSI	RCATGY	2 cut(s)	444, 738
BstSCI	CCNGG	2 cut(s)	342, 775
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	42, 77, 236, 750
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	1 cut(s)	557
BtsCI	GGATG	1 cut(s)	691
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	3 cut(s)	18, 83, 748
BveI	ACCTGC	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	438, 736
CaiI	CAGNNNCTG	1 cut(s)	521
CfoI	GCGC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	52, 768, 793
CviAII	CATG	8 cut(s)	97, 441, 470, 558, 701, 735, 836, 867
CviQI	GTAC	3 cut(s)	52, 768, 793
DdeI	CTNAG	2 cut(s)	21, 213
DpnI	GATC	5 cut(s)	26, 675, 705, 786, 822
DpnII	GATC	5 cut(s)	24, 673, 703, 784, 820
Eco130I	CCWWGG	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	8 cut(s)	100, 444, 473, 561, 704, 738, 839, 870
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FatI	CATG	8 cut(s)	96, 440, 469, 557, 700, 734, 835, 866
FauI	CCCGC	1 cut(s)	429
FbaI	TGATCA	3 cut(s)	673, 703, 784
Fnu4HI	GCNGC	4 cut(s)	31, 91, 225, 739
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	4 cut(s)	31, 91, 225, 739
FspBI	CTAG	4 cut(s)	267, 500, 587, 632
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	4 cut(s)	31, 91, 225, 739
GsaI	CCCAGC	2 cut(s)	304, 775
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	171
HapII	CCGG	1 cut(s)	777
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	8 cut(s)	100, 444, 473, 561, 704, 738, 839, 870
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	570
HinfI	GANTC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	2 cut(s)	522, 824
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	2 cut(s)	405, 567
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	7 cut(s)	112, 132, 138, 144, 278, 535, 820
HpyCH4V	TGCA	5 cut(s)	180, 224, 700, 728, 738
HpyF10VI	GCNNNNNNNGC	4 cut(s)	177, 248, 706, 772
HpyF3I	CTNAG	2 cut(s)	21, 213
Hsp92II	CATG	8 cut(s)	100, 444, 473, 561, 704, 738, 839, 870
HspAI	GCGC	1 cut(s)	210
Ksp22I	TGATCA	3 cut(s)	673, 703, 784
Kzo9I	GATC	5 cut(s)	24, 673, 703, 784, 820
LmnI	GCTCC	1 cut(s)	98
Lsp1109I	GCAGC	4 cut(s)	42, 77, 236, 750
LweI	GCATC	1 cut(s)	610
MaeI	CTAG	4 cut(s)	267, 500, 587, 632
MaeIII	GTNAC	3 cut(s)	390, 452, 830
MalI	GATC	5 cut(s)	26, 675, 705, 786, 822
MboI	GATC	5 cut(s)	24, 673, 703, 784, 820
MboII	GAAGA	1 cut(s)	367
MfeI	CAATTG	1 cut(s)	534
MluCI	AATT	7 cut(s)	143, 190, 412, 534, 580, 669, 692
MnlI	CCTC	7 cut(s)	41, 129, 226, 263, 604, 676, 724
MroXI	GAANNNNTTC	2 cut(s)	414, 572
MseI	TTAA	4 cut(s)	636, 645, 668, 849
MslI	CAYNNNNRTG	1 cut(s)	865
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	2 cut(s)	344, 777
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	177, 248, 706, 772
NciI	CCSGG	1 cut(s)	777
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	5 cut(s)	24, 673, 703, 784, 820
NlaIII	CATG	8 cut(s)	100, 444, 473, 561, 704, 738, 839, 870
NmuCI	GTSAC	2 cut(s)	452, 830
NspI	RCATGY	2 cut(s)	444, 738
PaeI	GCATGC	1 cut(s)	738
PdmI	GAANNNNTTC	2 cut(s)	414, 572
PfeI	GAWTC	1 cut(s)	541
PkrI	GCNGC	4 cut(s)	32, 92, 226, 740
PsiI	TTATAA	1 cut(s)	197
Psp6I	CCWGG	1 cut(s)	342
PspFI	CCCAGC	2 cut(s)	300, 771
PspGI	CCWGG	1 cut(s)	342
PstI	CTGCAG	1 cut(s)	226
PstNI	CAGNNNCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	53, 769, 794
RsaNI	GTAC	3 cut(s)	52, 768, 793
RseI	CAYNNNNRTG	1 cut(s)	865
SaqAI	TTAA	4 cut(s)	636, 645, 668, 849
SatI	GCNGC	4 cut(s)	31, 91, 225, 739
Sau3AI	GATC	5 cut(s)	24, 673, 703, 784, 820
ScrFI	CCNGG	2 cut(s)	344, 777
SfaNI	GCATC	1 cut(s)	610
SfcI	CTRYAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	865
SmlI	CTYRAG	1 cut(s)	840
SmoI	CTYRAG	1 cut(s)	840
SphI	GCATGC	1 cut(s)	738
Sse9I	AATT	7 cut(s)	143, 190, 412, 534, 580, 669, 692
SsiI	CCGC	1 cut(s)	436
SspMI	CTAG	4 cut(s)	267, 500, 587, 632
StyD4I	CCNGG	2 cut(s)	342, 775
StyI	CCWWGG	1 cut(s)	557
TasI	AATT	7 cut(s)	143, 190, 412, 534, 580, 669, 692
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	4 cut(s)	636, 645, 668, 849
Tru9I	TTAA	4 cut(s)	636, 645, 668, 849
TscAI	CASTG	3 cut(s)	25, 90, 748
TseFI	GTSAC	2 cut(s)	452, 830
TseI	GCWGC	4 cut(s)	30, 90, 224, 738
Tsp45I	GTSAC	2 cut(s)	452, 830
TspDTI	ATGAA	3 cut(s)	423, 790, 802
TspRI	CASTG	3 cut(s)	25, 90, 748
XapI	RAATTY	4 cut(s)	143, 190, 412, 692
XceI	RCATGY	2 cut(s)	444, 738
XmnI	GAANNNNTTC	2 cut(s)	414, 572
XspI	CTAG	4 cut(s)	267, 500, 587, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.