Rh3BG292700

Serine hydrolase involved in the detoxification of formaldehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012329
Physical Location & Seq
Forward (+)
29357844 .. 29363781
5938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG292700.1

Sequence Viewer

Length: 690 bp
ATGGAGGAGTGTAAGCCCACTGAGATCAGCAGCTCAAAGATGTTTGGAGGGTACAACAAGAGATACAAGCACTTCAGTCCTACACTGGGCTGCTCCATGACCTTCCACATCTATTTTCCTCCTTCTCCTTCCCCTTCCCCTTCCCACAAATTCCCCGTTCTTTACTGGCTCTCTGGCCTTACCTGCACAGATGAGAATTTTATAACCAAATCAGGCGCTCAGCGTTCTGCAGCAAAGGAGGGTATTGTTTTGATTGCCCCTGATACATCTCCTAGAGGCTTGTCTATTGAAGGAGAAGCAGATAGCTGGGATTTTGGTGTAGGTGCTGGATTTTATCTCAATGCTACCCAGGAGAAATGGAAGAACTGGCGTATGTATGATTATGTTGTCAAGGAGTTGCCCAAACTTCTGAATGAAAATTTTCCACAGCTTGATACATTGCGGGCATCTATATCTGGTCACTCAATGGGTGGACATGGTGCTTTGACAATCTACCTGAAAAACCTAGACAAATATAAGTCAGTATCTGCCTTCGCACCAATTGTGAATCCTATCAACTGCCCTTGGGGTCAGAAAGCTTTCTCAAATTATCTAGGTGGCAATAAAGCTGACTGGGAGGAATATGATGCCACTTGCCTAGTTAAGAAGTTTAATGATGTGTCAGCCACCATTTTAATTGATCAGGTATGA

Protein Analysis

229

Amino Acids

25.53

Weight (kDa)

6.95

Isoelectric Point (pI)

50.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Esterase PF00756 26 - 216 7.9e-50 Putative esterase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41530
fragaria_vesca FvH4_6g24520
malus_domestica MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis pycom12g06870 pycom14g06610
rosa_chinensis RchiOBHm_Chr3g0483631
rosa_laevigata RLG00000023263
rosa_multiflora Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii Rroxscaffold_6G00398170
rosa_rugosa Rorug03G0207500
rosa_samantha Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana Rw3G023120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
Acc36I ACCTGC 1 cut(s) 191
AciI CCGC 1 cut(s) 442
AcsI RAATTY 3 cut(s) 149, 196, 418
AcuI CTGAAG 1 cut(s) 58
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 86
AgsI TTSAA 1 cut(s) 290
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 5 cut(s) 33, 306, 430, 578, 608
AluI AGCT 5 cut(s) 33, 306, 430, 578, 608
AlwNI CAGNNNCTG 1 cut(s) 527
AoxI GGCC 1 cut(s) 175
ApeKI GCWGC 3 cut(s) 30, 90, 230
ApoI RAATTY 3 cut(s) 149, 196, 418
Asp700I GAANNNNTTC 2 cut(s) 420, 578
AspLEI GCGC 1 cut(s) 218
BbvI GCAGC 3 cut(s) 42, 77, 242
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 679
BfaI CTAG 4 cut(s) 273, 506, 593, 638
BfmI CTRYAG 1 cut(s) 228
BfoI RGCGCY 1 cut(s) 219
BfuAI ACCTGC 1 cut(s) 191
BisI GCNGC 3 cut(s) 31, 91, 231
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 3 cut(s) 32, 92, 232
Bme1390I CCNGG 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 350
BmrI ACTGGG 2 cut(s) 95, 622
BmsI GCATC 2 cut(s) 455, 616
BmuI ACTGGG 2 cut(s) 95, 622
Bpu1102I GCTNAGC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 348, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 4 cut(s) 90, 170, 371, 617
Bse3DI GCAATG 1 cut(s) 437
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 2 cut(s) 348, 563
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 2 cut(s) 12, 233
BseNI ACTGG 4 cut(s) 90, 170, 371, 617
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 3 cut(s) 42, 77, 242
BseYI CCCAGC 1 cut(s) 306
BsgI GTGCAG 1 cut(s) 169
BshFI GGCC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 86
BsnI GGCC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 24, 679
Bsp1720I GCTNAGC 1 cut(s) 219
BspACI CCGC 1 cut(s) 442
BspANI GGCC 1 cut(s) 177
BspCNI CTCAG 2 cut(s) 13, 232
BspMAI CTGCAG 1 cut(s) 232
BspMI ACCTGC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 437
BsrI ACTGG 4 cut(s) 90, 170, 371, 617
BssECI CCNNGG 2 cut(s) 348, 563
BssMI GATC 2 cut(s) 24, 679
BssT1I CCWWGG 1 cut(s) 563
Bst2UI CCWGG 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 21, 219
BstH2I RGCGCY 1 cut(s) 219
BstHHI GCGC 1 cut(s) 218
BstKTI GATC 2 cut(s) 27, 682
BstMBI GATC 2 cut(s) 24, 679
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 3 cut(s) 42, 77, 242
BsuRI GGCC 1 cut(s) 177
BtsIMutI CAGTG 2 cut(s) 18, 83
BveI ACCTGC 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 444
CaiI CAGNNNCTG 1 cut(s) 527
CfoI GCGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 97, 476
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 21, 219
DpnI GATC 2 cut(s) 26, 681
DpnII GATC 2 cut(s) 24, 679
Eco130I CCWWGG 1 cut(s) 563
Eco57I CTGAAG 1 cut(s) 58
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
FaeI CATG 2 cut(s) 100, 479
FatI CATG 2 cut(s) 96, 475
FauI CCCGC 1 cut(s) 435
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 31, 91, 231
Fsp4HI GCNGC 3 cut(s) 31, 91, 231
FspBI CTAG 4 cut(s) 273, 506, 593, 638
GlaI GCGC 1 cut(s) 217
GluI GCNGC 3 cut(s) 31, 91, 231
GsaI CCCAGC 1 cut(s) 310
HaeII RGCGCY 1 cut(s) 219
HaeIII GGCC 1 cut(s) 177
HhaI GCGC 1 cut(s) 218
Hin1II CATG 2 cut(s) 100, 479
Hin6I GCGC 1 cut(s) 216
HinP1I GCGC 1 cut(s) 216
HindIII AAGCTT 1 cut(s) 576
HinfI GANTC 1 cut(s) 547
Hpy166II GTNNAC 1 cut(s) 473
Hpy188I TCNGA 2 cut(s) 411, 573
Hpy8I GTNNAC 1 cut(s) 473
HpyAV CCTTC 7 cut(s) 112, 132, 138, 144, 150, 284, 541
HpyCH4V TGCA 2 cut(s) 186, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 2 cut(s) 21, 219
Hsp92II CATG 2 cut(s) 100, 479
HspAI GCGC 1 cut(s) 216
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 2 cut(s) 24, 679
LmnI GCTCC 1 cut(s) 98
Lsp1109I GCAGC 3 cut(s) 42, 77, 242
LweI GCATC 2 cut(s) 455, 616
MaeI CTAG 4 cut(s) 273, 506, 593, 638
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 26, 681
MboI GATC 2 cut(s) 24, 679
MboII GAAGA 1 cut(s) 373
MfeI CAATTG 1 cut(s) 540
MluCI AATT 6 cut(s) 149, 196, 418, 540, 586, 675
MnlI CCTC 5 cut(s) 41, 129, 232, 269, 610
MroXI GAANNNNTTC 2 cut(s) 420, 578
MseI TTAA 3 cut(s) 642, 651, 674
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 540
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 1 cut(s) 183
NdeII GATC 2 cut(s) 24, 679
NlaIII CATG 2 cut(s) 100, 479
NmuCI GTSAC 1 cut(s) 458
PdmI GAANNNNTTC 2 cut(s) 420, 578
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 3 cut(s) 32, 92, 232
PsiI TTATAA 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 1 cut(s) 348
PstI CTGCAG 1 cut(s) 232
PstNI CAGNNNCTG 1 cut(s) 527
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 3 cut(s) 642, 651, 674
SatI GCNGC 3 cut(s) 31, 91, 231
Sau3AI GATC 2 cut(s) 24, 679
ScrFI CCNGG 1 cut(s) 350
SfaNI GCATC 2 cut(s) 455, 616
SfcI CTRYAG 1 cut(s) 228
Sse9I AATT 6 cut(s) 149, 196, 418, 540, 586, 675
SsiI CCGC 1 cut(s) 442
SspMI CTAG 4 cut(s) 273, 506, 593, 638
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 563
TasI AATT 6 cut(s) 149, 196, 418, 540, 586, 675
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 3 cut(s) 642, 651, 674
Tru9I TTAA 3 cut(s) 642, 651, 674
TscAI CASTG 2 cut(s) 25, 90
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 3 cut(s) 30, 90, 230
Tsp45I GTSAC 1 cut(s) 458
TspDTI ATGAA 1 cut(s) 429
TspRI CASTG 2 cut(s) 25, 90
XapI RAATTY 3 cut(s) 149, 196, 418
XmnI GAANNNNTTC 2 cut(s) 420, 578
XspI CTAG 4 cut(s) 273, 506, 593, 638
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.