Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012329

Physical Location & Seq

Genomic Coordinates Reverse (-)

19988680 .. 19994155

Gene Structure 5476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00398170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGTGTAAGCCCACTGAGATCAGCAGCTCAAAGATGTTTGGAGGGTACAACAAGAGATACAAGCATTTCAGTCCTACACTGGGCTGCTCCATGACCTTCCACATCTATTTTCCTCCTTCTCCTTCCCCTTCCCACAAATTCCCCGTTCTTTACTGGCTCTCTGGCCTTACCTGCACAGATGAGAATTTCATAACCAAATCAGGCGCTCAGCGTTCTGCAGCAAAGGAGGGTATTGCTTTGATTTCCCCTGATACATCTCCTAGAGGCTTGTCTATTGAAGGAGAAGCAGATAGCTGGGATTTTGGTGTAGGTGCTGGATTTTATCTCAATGCTACCCAGGAGAAATGGAAGAACTGGTGTATGTATGATTATGTTGTCAAGGAGTTGCCCAAACTTCTGAATGAAAACTTTCCACAGCTTGATACATTGCGGGCATCTATATCTGGTCACTCAATGGGTGGACATGGTGCTTTGACAATCTACCTGAAAAACCTAGACAAATATAAGTCAGTATCTGCCTTCGCACCAATTGTGAATCCTATCAACTGCCCATGGGGTCAGAAAGCTTTCTCAAATTATCTAGGTGGCAATAAAGCTGATTGGGAGGAATATGATGCCACTTGCCTAGTTAAGAAGTTTAATGATGTGTCAGCCACCATTTTAATTGATCAGGGGGAGGATGACAAATTCTTGCATGATCAGCTACTACCACATAAGTTTGCAGAGGCATGCAGCAGTGCTAAAGTTCCACTTCTACTGCGTACCCAGCCCAGTTATGATCACTCATACTATTTCATTGCTACCTTCATAGACGATCACATCAGTCACCATGCTCAAGCTGTTAAACTGCCTACACCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0008150 GO:0010035 GO:0010038 GO:0016787 GO:0016788 GO:0016790 GO:0018738 GO:0042221 GO:0046686 GO:0048046 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00680 ko01120 ko01200 map00680 map01120 map01200

Pfam Domains

Protein Families

Esterase

Protein Analysis

288

Amino Acids

32.2

Weight (kDa)

6.4

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Esterase	PF00756	25 - 275	5e-60	Putative esterase
Peptidase_S9	PF00326	109 - 265	1.5e-09	Prolyl oligopeptidase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41530
fragaria_vesca	FvH4_6g24520
malus_domestica	MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica	Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis	pycom12g06870 pycom14g06610
rosa_chinensis	RchiOBHm_Chr3g0483631
rosa_laevigata	RLG00000023263
rosa_multiflora	Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii	Rroxscaffold_6G00398170
rosa_rugosa	Rorug03G0207500
rosa_samantha	Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana	Rw3G023120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	1 cut(s)	433
AcsI	RAATTY	3 cut(s)	140, 187, 689
AfaI	GTAC	2 cut(s)	50, 766
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	7 cut(s)	30, 297, 421, 569, 599, 706, 842
AluI	AGCT	7 cut(s)	30, 297, 421, 569, 599, 706, 842
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	4 cut(s)	27, 87, 221, 735
ApoI	RAATTY	3 cut(s)	140, 187, 689
Asp700I	GAANNNNTTC	2 cut(s)	411, 569
AspLEI	GCGC	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	821
BbvI	GCAGC	4 cut(s)	39, 74, 233, 747
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	3 cut(s)	670, 700, 781
BfaI	CTAG	4 cut(s)	264, 497, 584, 629
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	210
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	28, 88, 222, 736
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	29, 89, 223, 737
Bme1390I	CCNGG	1 cut(s)	341
BmrFI	CCNGG	1 cut(s)	341
BmrI	ACTGGG	2 cut(s)	92, 768
BmsI	GCATC	2 cut(s)	446, 607
BmuI	ACTGGG	2 cut(s)	92, 768
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	822
BsaJI	CCNNGG	2 cut(s)	339, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	87, 161, 362, 774
Bse3DI	GCAATG	2 cut(s)	428, 798
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	2 cut(s)	339, 554
BseGI	GGATG	1 cut(s)	688
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMI	GCAATG	2 cut(s)	428, 798
BseMII	CTCAG	2 cut(s)	9, 224
BseNI	ACTGG	4 cut(s)	87, 161, 362, 774
BseXI	GCAGC	4 cut(s)	39, 74, 233, 747
BseYI	CCCAGC	2 cut(s)	297, 768
BsgI	GTGCAG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	83
BsnI	GGCC	1 cut(s)	168
Bsp143I	GATC	5 cut(s)	21, 670, 700, 781, 817
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	1 cut(s)	433
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	10, 223
BspMAI	CTGCAG	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	428, 798
BsrI	ACTGG	4 cut(s)	87, 161, 362, 774
BssECI	CCNNGG	2 cut(s)	339, 554
BssMI	GATC	5 cut(s)	21, 670, 700, 781, 817
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	435, 733
BstDEI	CTNAG	2 cut(s)	18, 210
BstDSI	CCRYGG	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	688
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	5 cut(s)	24, 673, 703, 784, 820
BstMBI	GATC	5 cut(s)	21, 670, 700, 781, 817
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 703, 769
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	219
BstV1I	GCAGC	4 cut(s)	39, 74, 233, 747
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	688
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	3 cut(s)	15, 80, 745
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	2 cut(s)	435, 733
CaiI	CAGNNNCTG	1 cut(s)	518
CfoI	GCGC	1 cut(s)	209
Csp6I	GTAC	2 cut(s)	49, 765
CviAII	CATG	7 cut(s)	94, 467, 555, 698, 732, 833, 864
CviQI	GTAC	2 cut(s)	49, 765
DdeI	CTNAG	2 cut(s)	18, 210
DpnI	GATC	5 cut(s)	23, 672, 702, 783, 819
DpnII	GATC	5 cut(s)	21, 670, 700, 781, 817
Eco130I	CCWWGG	1 cut(s)	554
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	554
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	7 cut(s)	97, 470, 558, 701, 735, 836, 867
FalI	AAGNNNNNCTT	2 cut(s)	738, 770
FatI	CATG	7 cut(s)	93, 466, 554, 697, 731, 832, 863
FauI	CCCGC	1 cut(s)	426
FbaI	TGATCA	3 cut(s)	670, 700, 781
Fnu4HI	GCNGC	4 cut(s)	28, 88, 222, 736
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	4 cut(s)	28, 88, 222, 736
FspBI	CTAG	4 cut(s)	264, 497, 584, 629
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	4 cut(s)	28, 88, 222, 736
GsaI	CCCAGC	2 cut(s)	301, 772
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	168
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	7 cut(s)	97, 470, 558, 701, 735, 836, 867
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	1 cut(s)	538
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188I	TCNGA	2 cut(s)	402, 564
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	7 cut(s)	109, 129, 135, 141, 275, 532, 817
HpyCH4V	TGCA	5 cut(s)	177, 221, 697, 725, 735
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 703, 769
HpyF3I	CTNAG	2 cut(s)	18, 210
Hsp92II	CATG	7 cut(s)	97, 470, 558, 701, 735, 836, 867
HspAI	GCGC	1 cut(s)	207
Ksp22I	TGATCA	3 cut(s)	670, 700, 781
Kzo9I	GATC	5 cut(s)	21, 670, 700, 781, 817
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	4 cut(s)	39, 74, 233, 747
LweI	GCATC	2 cut(s)	446, 607
MaeI	CTAG	4 cut(s)	264, 497, 584, 629
MaeIII	GTNAC	2 cut(s)	449, 827
MalI	GATC	5 cut(s)	23, 672, 702, 783, 819
MboI	GATC	5 cut(s)	21, 670, 700, 781, 817
MboII	GAAGA	1 cut(s)	364
MfeI	CAATTG	1 cut(s)	531
MluCI	AATT	6 cut(s)	140, 187, 531, 577, 666, 689
MnlI	CCTC	7 cut(s)	38, 126, 223, 260, 601, 673, 721
MroXI	GAANNNNTTC	2 cut(s)	411, 569
MseI	TTAA	4 cut(s)	633, 642, 665, 846
MslI	CAYNNNNRTG	1 cut(s)	862
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	3 cut(s)	174, 703, 769
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	5 cut(s)	21, 670, 700, 781, 817
NlaIII	CATG	7 cut(s)	97, 470, 558, 701, 735, 836, 867
NmuCI	GTSAC	2 cut(s)	449, 827
NspI	RCATGY	1 cut(s)	735
PaeI	GCATGC	1 cut(s)	735
PdmI	GAANNNNTTC	2 cut(s)	411, 569
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	4 cut(s)	29, 89, 223, 737
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	2 cut(s)	297, 768
PspGI	CCWGG	1 cut(s)	339
PstI	CTGCAG	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	50, 766
RsaNI	GTAC	2 cut(s)	49, 765
RseI	CAYNNNNRTG	1 cut(s)	862
SaqAI	TTAA	4 cut(s)	633, 642, 665, 846
SatI	GCNGC	4 cut(s)	28, 88, 222, 736
Sau3AI	GATC	5 cut(s)	21, 670, 700, 781, 817
ScrFI	CCNGG	1 cut(s)	341
SfaNI	GCATC	2 cut(s)	446, 607
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	862
SmlI	CTYRAG	1 cut(s)	837
SmoI	CTYRAG	1 cut(s)	837
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	6 cut(s)	140, 187, 531, 577, 666, 689
SsiI	CCGC	1 cut(s)	433
SspMI	CTAG	4 cut(s)	264, 497, 584, 629
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	554
TasI	AATT	6 cut(s)	140, 187, 531, 577, 666, 689
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	4 cut(s)	633, 642, 665, 846
Tru9I	TTAA	4 cut(s)	633, 642, 665, 846
TscAI	CASTG	3 cut(s)	22, 87, 745
TseFI	GTSAC	2 cut(s)	449, 827
TseI	GCWGC	4 cut(s)	27, 87, 221, 735
Tsp45I	GTSAC	2 cut(s)	449, 827
TspDTI	ATGAA	4 cut(s)	181, 420, 787, 799
TspRI	CASTG	3 cut(s)	22, 87, 745
XapI	RAATTY	3 cut(s)	140, 187, 689
XceI	RCATGY	1 cut(s)	735
XmnI	GAANNNNTTC	2 cut(s)	411, 569
XspI	CTAG	4 cut(s)	264, 497, 584, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.