Rmu_co8515891.1_g000001

Serine hydrolase involved in the detoxification of formaldehyde

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8515891.1
OG0012329
Physical Location & Seq
Reverse (-)
1 .. 4446
4446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8515891.1_g000001.1.cds

Sequence Viewer

Length: 639 bp
atgtttggagggtacaacaagagatacaagcatttcagtcctacactgggctgctccatgaccttccacatctattttcctccttctccttccccttcccacaaattccccgttctttactggctctctggccttacctgcacagatgagaattttataaccaaatcaggcgctcagcgttctgcagcaaaggagggtattgctttgattgcccctgatacatctcctagaggcttatctattgaaggagaagcagatagctgggattttggtgtaggtgctggattttatctcaatgctacccaggagaaatggaagaactggcgtatgtatgattatgttgtcaaggagttacccaaacttctgaatgaaaattttccacagcttgatacattgcgggcatgtatatctggtcactcaatgggtggacatggtgctttgacaatctacctgaaaaacctagacaaatataagtcagtatctgccttctcaccaattgtgaatcctatcaactgcccatggggtcagaaagctttctcaaattatctaggtggcagtaaagctgactgggaggaatatgatgccacttgcctagttaagaagtttaatgatgtgtcagccaccattttaattgatcag

Protein Analysis

213

Amino Acids

23.77

Weight (kDa)

7.62

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41530
fragaria_vesca FvH4_6g24520
malus_domestica MD12G1082500.v1.1 MD14G1077300.v1.1
prunus_persica Prupe.7G053400_v2.0.a1 Prupe.7G053400_v2.0.a1
pyrus_communis pycom12g06870 pycom14g06610
rosa_chinensis RchiOBHm_Chr3g0483631
rosa_laevigata RLG00000023263
rosa_multiflora Rmu_co8515891.1_g000001 Rmu_sc0000555.1_g000009
rosa_roxburghii Rroxscaffold_6G00398170
rosa_rugosa Rorug03G0207500
rosa_samantha Rh3AG256000 Rh3BG292700 Rh3CG290400 Rh3DG286300
rosa_wichuraiana Rw3G023120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 158
Acc36I ACCTGC 1 cut(s) 146
AciI CCGC 1 cut(s) 397
AcsI RAATTY 3 cut(s) 104, 151, 373
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 1 cut(s) 47
AgsI TTSAA 1 cut(s) 245
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 4 cut(s) 261, 385, 533, 563
AluI AGCT 4 cut(s) 261, 385, 533, 563
AlwNI CAGNNNCTG 1 cut(s) 482
AoxI GGCC 1 cut(s) 130
ApeKI GCWGC 2 cut(s) 51, 185
ApoI RAATTY 3 cut(s) 104, 151, 373
Asp700I GAANNNNTTC 2 cut(s) 375, 533
AspLEI GCGC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 483
BbvI GCAGC 2 cut(s) 38, 197
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 634
BfaI CTAG 4 cut(s) 228, 461, 548, 593
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 146
BisI GCNGC 2 cut(s) 52, 186
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 2 cut(s) 53, 187
Bme1390I CCNGG 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 305
BmrI ACTGGG 2 cut(s) 56, 577
BmsI GCATC 1 cut(s) 571
BmuI ACTGGG 2 cut(s) 56, 577
Bpu1102I GCTNAGC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 303, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse1I ACTGG 4 cut(s) 51, 125, 326, 572
Bse3DI GCAATG 1 cut(s) 392
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 303, 518
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 188
BseNI ACTGG 4 cut(s) 51, 125, 326, 572
BseXI GCAGC 2 cut(s) 38, 197
BseYI CCCAGC 1 cut(s) 261
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 47
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 634
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 518
BspACI CCGC 1 cut(s) 397
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 146
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 4 cut(s) 51, 125, 326, 572
BssECI CCNNGG 2 cut(s) 303, 518
BssMI GATC 1 cut(s) 634
BssT1I CCWWGG 1 cut(s) 518
Bst2UI CCWGG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 518
BstH2I RGCGCY 1 cut(s) 174
BstHHI GCGC 1 cut(s) 173
BstKTI GATC 1 cut(s) 637
BstMBI GATC 1 cut(s) 634
BstMWI GCNNNNNNNGC 2 cut(s) 138, 209
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 38, 197
BsuRI GGCC 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 518
BtsIMutI CAGTG 1 cut(s) 44
BveI ACCTGC 1 cut(s) 146
Cac8I GCNNGC 1 cut(s) 399
CaiI CAGNNNCTG 1 cut(s) 482
CfoI GCGC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 13
CviAII CATG 4 cut(s) 58, 402, 431, 519
CviJI RGCY 9 cut(s) 51, 124, 132, 234, 261, 385, 533, 563, 620
CviKI_1 RGCY 9 cut(s) 51, 124, 132, 234, 261, 385, 533, 563, 620
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 174
DpnI GATC 1 cut(s) 636
DpnII GATC 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 518
ErhI CCWWGG 1 cut(s) 518
FaeI CATG 4 cut(s) 61, 405, 434, 522
FatI CATG 4 cut(s) 57, 401, 430, 518
FauI CCCGC 1 cut(s) 390
FbaI TGATCA 1 cut(s) 634
Fnu4HI GCNGC 2 cut(s) 52, 186
Fsp4HI GCNGC 2 cut(s) 52, 186
FspBI CTAG 4 cut(s) 228, 461, 548, 593
GlaI GCGC 1 cut(s) 172
GluI GCNGC 2 cut(s) 52, 186
GsaI CCCAGC 1 cut(s) 265
HaeII RGCGCY 1 cut(s) 174
HaeIII GGCC 1 cut(s) 132
HhaI GCGC 1 cut(s) 173
Hin1II CATG 4 cut(s) 61, 405, 434, 522
Hin6I GCGC 1 cut(s) 171
HinP1I GCGC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 531
HinfI GANTC 1 cut(s) 502
HphI GGTGA 1 cut(s) 483
Hpy166II GTNNAC 1 cut(s) 428
Hpy188I TCNGA 2 cut(s) 366, 528
Hpy8I GTNNAC 1 cut(s) 428
HpyAV CCTTC 6 cut(s) 73, 93, 99, 105, 239, 496
HpyCH4V TGCA 2 cut(s) 141, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 209
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 4 cut(s) 61, 405, 434, 522
HspAI GCGC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 634
Kzo9I GATC 1 cut(s) 634
LmnI GCTCC 1 cut(s) 59
Lsp1109I GCAGC 2 cut(s) 38, 197
LweI GCATC 1 cut(s) 571
MaeI CTAG 4 cut(s) 228, 461, 548, 593
MaeIII GTNAC 2 cut(s) 351, 413
MalI GATC 1 cut(s) 636
MboI GATC 1 cut(s) 634
MboII GAAGA 1 cut(s) 328
MfeI CAATTG 1 cut(s) 495
MluCI AATT 6 cut(s) 104, 151, 373, 495, 541, 630
MnlI CCTC 4 cut(s) 90, 187, 224, 565
MroXI GAANNNNTTC 2 cut(s) 375, 533
MseI TTAA 3 cut(s) 597, 606, 629
MspR9I CCNGG 1 cut(s) 305
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 138, 209
NcoI CCATGG 1 cut(s) 518
NdeII GATC 1 cut(s) 634
NlaIII CATG 4 cut(s) 61, 405, 434, 522
NmuCI GTSAC 1 cut(s) 413
NspI RCATGY 1 cut(s) 405
PdmI GAANNNNTTC 2 cut(s) 375, 533
PfeI GAWTC 1 cut(s) 502
PkrI GCNGC 2 cut(s) 53, 187
PsiI TTATAA 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 303
PspFI CCCAGC 1 cut(s) 261
PspGI CCWGG 1 cut(s) 303
PstI CTGCAG 1 cut(s) 187
PstNI CAGNNNCTG 1 cut(s) 482
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 3 cut(s) 597, 606, 629
SatI GCNGC 2 cut(s) 52, 186
Sau3AI GATC 1 cut(s) 634
ScrFI CCNGG 1 cut(s) 305
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 1 cut(s) 183
Sse9I AATT 6 cut(s) 104, 151, 373, 495, 541, 630
SsiI CCGC 1 cut(s) 397
SspMI CTAG 4 cut(s) 228, 461, 548, 593
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 518
TasI AATT 6 cut(s) 104, 151, 373, 495, 541, 630
TfiI GAWTC 1 cut(s) 502
Tru1I TTAA 3 cut(s) 597, 606, 629
Tru9I TTAA 3 cut(s) 597, 606, 629
TscAI CASTG 1 cut(s) 51
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 2 cut(s) 51, 185
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 1 cut(s) 384
TspRI CASTG 1 cut(s) 51
XapI RAATTY 3 cut(s) 104, 151, 373
XceI RCATGY 1 cut(s) 405
XmnI GAANNNNTTC 2 cut(s) 375, 533
XspI CTAG 4 cut(s) 228, 461, 548, 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.