Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Forward (+)

17507343 .. 17508616

Gene Structure 1274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGACGAAACCAACGGACGAAGAGAAACTCACGATTTCATGAACGTCAACGTTGAATCCTTCTCTCAGCTTCCTTTCATCCGCCGTACTCCTCCCAAAGAAAAAGCCGCCATTATTCGTCTCTTCGGCCAAGAGCTCGTCGGTGATAACTCCGACAACTTATCCGCAGAACCTTCTGATCATCAAACCACTACCAAGAACGATGAGAGCTCTGAGAATATCAAGGACAAAGACAAAGAAAAAGATAAGGACAAAGACAAAGATAACAACAACAACAGGAGATTCGAGTGTCACTACTGCTTCAGAAACTTCCCAACTTCTCAAGCCCTAGGTGGACATCAAAACGCTCACAAACGTGAACGTCAACACGCCAAACGCGGTTCCATGACATCATACCTTCATCATCATCAGCCTCATGACCCTCACCACATCTACGGCTTCCTCAACAACCACCACCACCGTCACTATCCGTCTTGGACGACGGAAGCTAGATCATACTACGGCGGAGGGGGACATCAAACGCCGTCGTACTACTCAAGGAATACTCTTGCTCCTCCTTCTTCTAACCCACCGACAATCAACGGAAGTCCTTTAGGTTTGTGGCGTGTACCGCCTTCCACGTCAACAAATACTATTCAAGGCGTTTACTCATCTTCACCAGCTTCAGCGTTTAGGTCGCATGAGCAAGAGACTAATAAGGAGCCTAATAACTGGCCGTACAGATTGATGAAACCCAATGTGCAAGATCATGTGAGTCTCGATCTTCATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

257

Amino Acids

29.57

Weight (kDa)

7.91

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	378
AciI	CCGC	6 cut(s)	82, 108, 165, 378, 504, 611
AclI	AACGTT	1 cut(s)	51
AcoI	YGGCCR	2 cut(s)	127, 713
AcuI	CTGAAG	2 cut(s)	286, 648
AfaI	GTAC	4 cut(s)	88, 530, 609, 719
AgsI	TTSAA	2 cut(s)	56, 638
AjiI	CACGTC	1 cut(s)	621
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	70, 136, 210, 488, 662
AluI	AGCT	5 cut(s)	70, 136, 210, 488, 662
Alw21I	GWGCWC	2 cut(s)	138, 212
Alw26I	GTCTC	3 cut(s)	125, 683, 761
AoxI	GGCC	2 cut(s)	127, 713
AspA2I	CCTAGG	1 cut(s)	328
AsuHPI	GGTGA	3 cut(s)	155, 416, 648
AvrII	CCTAGG	1 cut(s)	328
BanII	GRGCYC	2 cut(s)	138, 212
Bbv12I	GWGCWC	2 cut(s)	138, 212
BceAI	ACGGC	5 cut(s)	69, 451, 508, 517, 700
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	125, 683, 761
BfaI	CTAG	2 cut(s)	329, 489
BisI	GCNGC	1 cut(s)	108
BlnI	CCTAGG	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	621
BmiI	GGNNCC	2 cut(s)	382, 702
BpuEI	CTTGAG	2 cut(s)	306, 520
BsaBI	GATNNNNATC	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bse1I	ACTGG	1 cut(s)	716
Bse8I	GATNNNNATC	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	78
BseJI	GATNNNNATC	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	80, 204
BseNI	ACTGG	1 cut(s)	716
BseRI	GAGGAG	2 cut(s)	81, 543
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	2 cut(s)	129, 715
BsiHKAI	GWGCWC	2 cut(s)	138, 212
BslFI	GGGAC	1 cut(s)	525
BsmAI	GTCTC	3 cut(s)	125, 683, 761
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	129, 715
Bsp1286I	GDGCHC	2 cut(s)	138, 212
Bsp143I	GATC	4 cut(s)	178, 491, 745, 760
BspACI	CCGC	6 cut(s)	82, 108, 165, 378, 504, 611
BspANI	GGCC	2 cut(s)	129, 715
BspCNI	CTCAG	2 cut(s)	79, 205
BspFNI	CGCG	1 cut(s)	378
BspHI	TCATGA	2 cut(s)	39, 415
BspLI	GGNNCC	2 cut(s)	382, 702
BsrI	ACTGG	1 cut(s)	716
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	4 cut(s)	178, 491, 745, 760
BssT1I	CCWWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	2 cut(s)	16, 128
BstDEI	CTNAG	2 cut(s)	66, 213
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	4 cut(s)	181, 494, 748, 763
BstMAI	GTCTC	3 cut(s)	125, 683, 761
BstMBI	GATC	4 cut(s)	178, 491, 745, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	610
BstUI	CGCG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	129, 715
BtrI	CACGTC	1 cut(s)	621
BtsCI	GGATG	1 cut(s)	78
CciI	TCATGA	2 cut(s)	39, 415
Csp6I	GTAC	4 cut(s)	87, 529, 608, 718
CviAII	CATG	5 cut(s)	40, 385, 416, 680, 749
CviQI	GTAC	4 cut(s)	87, 529, 608, 718
DdeI	CTNAG	2 cut(s)	66, 213
DpnI	GATC	4 cut(s)	180, 493, 747, 762
DpnII	GATC	4 cut(s)	178, 491, 745, 760
EaeI	YGGCCR	2 cut(s)	127, 713
Eam1104I	CTCTTC	2 cut(s)	16, 128
EarI	CTCTTC	2 cut(s)	16, 128
EciI	GGCGGA	2 cut(s)	71, 519
Ecl136II	GAGCTC	2 cut(s)	136, 210
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	2 cut(s)	138, 212
Eco53kI	GAGCTC	2 cut(s)	136, 210
Eco57I	CTGAAG	2 cut(s)	286, 648
EcoICRI	GAGCTC	2 cut(s)	136, 210
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	2 cut(s)	138, 212
ErhI	CCWWGG	1 cut(s)	328
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	5 cut(s)	43, 388, 419, 683, 752
FaiI	YATR	7 cut(s)	41, 386, 394, 417, 496, 681, 750
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	5 cut(s)	39, 384, 415, 679, 748
FbaI	TGATCA	1 cut(s)	178
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	2 cut(s)	138, 212
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	2 cut(s)	329, 489
GluI	GCNGC	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	129, 715
Hin1II	CATG	5 cut(s)	43, 388, 419, 683, 752
HincII	GTYRAC	3 cut(s)	49, 365, 624
HindII	GTYRAC	3 cut(s)	49, 365, 624
HinfI	GANTC	3 cut(s)	56, 282, 754
HphI	GGTGA	3 cut(s)	155, 416, 648
Hpy166II	GTNNAC	7 cut(s)	49, 335, 359, 365, 608, 624, 646
Hpy188I	TCNGA	5 cut(s)	154, 178, 214, 305, 773
Hpy188III	TCNNGA	4 cut(s)	32, 40, 416, 758
Hpy8I	GTNNAC	7 cut(s)	49, 335, 359, 365, 608, 624, 646
Hpy99I	CGWCG	3 cut(s)	143, 484, 529
HpyAV	CCTTC	5 cut(s)	70, 183, 407, 567, 624
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	5 cut(s)	45, 51, 355, 361, 620
HpyCH4V	TGCA	1 cut(s)	742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	610
HpyF3I	CTNAG	2 cut(s)	66, 213
HpySE526I	ACGT	5 cut(s)	45, 51, 355, 361, 620
Hsp92II	CATG	5 cut(s)	43, 388, 419, 683, 752
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	178, 491, 745, 760
LmnI	GCTCC	2 cut(s)	556, 700
LpnPI	CCDG	3 cut(s)	262, 672, 697
MaeI	CTAG	2 cut(s)	329, 489
MaeII	ACGT	5 cut(s)	45, 51, 355, 361, 620
MaeIII	GTNAC	2 cut(s)	290, 461
MalI	GATC	4 cut(s)	180, 493, 747, 762
MboI	GATC	4 cut(s)	178, 491, 745, 760
MboII	GAAGA	5 cut(s)	33, 115, 552, 645, 755
MhlI	GDGCHC	2 cut(s)	138, 212
MlyI	GAGTC	1 cut(s)	763
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	102, 423, 432, 452, 500, 564
MslI	CAYNNNNRTG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	1 cut(s)	610
NdeII	GATC	4 cut(s)	178, 491, 745, 760
NlaIII	CATG	5 cut(s)	43, 388, 419, 683, 752
NlaIV	GGNNCC	2 cut(s)	382, 702
NmuCI	GTSAC	2 cut(s)	290, 461
OliI	CACNNNNGTG	1 cut(s)	354
PagI	TCATGA	2 cut(s)	39, 415
PfeI	GAWTC	2 cut(s)	56, 282
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
Psp124BI	GAGCTC	2 cut(s)	138, 212
Psp1406I	AACGTT	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	382, 702
RsaI	GTAC	4 cut(s)	88, 530, 609, 719
RsaNI	GTAC	4 cut(s)	87, 529, 608, 718
RseI	CAYNNNNRTG	1 cut(s)	354
SacI	GAGCTC	2 cut(s)	138, 212
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	4 cut(s)	178, 491, 745, 760
SchI	GAGTC	1 cut(s)	763
SduI	GDGCHC	2 cut(s)	138, 212
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	321, 535
SmoI	CTYRAG	2 cut(s)	321, 535
SsiI	CCGC	6 cut(s)	82, 108, 165, 378, 504, 611
SspMI	CTAG	2 cut(s)	329, 489
SstI	GAGCTC	2 cut(s)	138, 212
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	5 cut(s)	48, 54, 358, 364, 623
TaqI	TCGA	2 cut(s)	285, 759
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	2 cut(s)	56, 282
TseFI	GTSAC	2 cut(s)	290, 461
Tsp45I	GTSAC	2 cut(s)	290, 461
TspDTI	ATGAA	6 cut(s)	28, 56, 67, 389, 743, 755
TspGWI	ACGGA	4 cut(s)	30, 459, 497, 597
XmaJI	CCTAGG	1 cut(s)	328
XspI	CTAG	2 cut(s)	329, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.