Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005295.1

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

11818 .. 12624

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005295.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggagaagattgagagggaaacccaagacttcatgaacgtggaatccttctctcagctgccctttatccggccggctcctccggtcaacaaagaaaagggcattaggctctttggcatcgaattcggggccggcgtcgacaccaaccacgagtcggaatcggtcgacaacaatgtgagtgagaacgggaaagaagacgagggcaacaagcacaccaacaccaacaacacaaacataagcaacagcaacagcgaaaatggcagcgagagcagccgcagattcgagtgccattactgctgcagaaacttcccgaccagccaagccctcggcggccaccaaaacgcacacaaaagagagcggcagcacgccaaacgcgagcatctccagtcggctatggtgcatggagggctggtctcccacgacgctgcacacgtgtacggcttgatgaattacagccgccttggctctgctcatcatcaccatcatcatcccacctatccgtcctggaacactaactacagttctagtactactactaccagtcctaggttctacggaagccccggtggatcatacggctctcaatctgctcccataaacgggagtcctttgggcttgtggcggatcccatctgctaaccctagtttcaatcgtgaccgttcgttgatgaacccgctggtgacgccgttgttcgccggagaagaactgaagccggttgttgttggtgggtctggtaattctcaaagccggtacatgtatgaatcgagtgtgcagcaagaccatgtgagtctggatcttcatctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

268

Amino Acids

29.73

Weight (kDa)

6.51

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	358
AccI	GTMKAC	2 cut(s)	138, 165
AccII	CGCG	1 cut(s)	375
AciI	CCGC	6 cut(s)	274, 330, 358, 457, 622, 674
AclWI	GGATC	4 cut(s)	577, 619, 632, 801
AcoI	YGGCCR	2 cut(s)	71, 331
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	728
AcvI	CACGTG	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	135, 683
AfaI	GTAC	3 cut(s)	437, 529, 752
AfiI	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
AflIII	ACRYGT	3 cut(s)	430, 432, 753
AgsI	TTSAA	1 cut(s)	649
AjnI	CCWGG	1 cut(s)	503
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	4 cut(s)	577, 619, 632, 801
AoxI	GGCC	3 cut(s)	71, 129, 331
ApeKI	GCWGC	7 cut(s)	58, 261, 270, 297, 361, 425, 772
ApoI	RAATTY	1 cut(s)	122
AspA2I	CCTAGG	1 cut(s)	545
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	564
AsuHPI	GGTGA	2 cut(s)	470, 691
AvrII	CCTAGG	1 cut(s)	545
BamHI	GGATCC	1 cut(s)	624
BauI	CACGAG	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	7 cut(s)	45, 273, 282, 284, 373, 412, 784
BccI	CCATC	2 cut(s)	489, 637
BceAI	ACGGC	3 cut(s)	454, 592, 670
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	505
BcnI	CCSGG	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	3 cut(s)	525, 546, 642
BfmI	CTRYAG	2 cut(s)	298, 517
BglI	GCCNNNNNGGC	1 cut(s)	462
BlnI	CCTAGG	1 cut(s)	545
BmcAI	AGTACT	1 cut(s)	529
Bme1390I	CCNGG	2 cut(s)	505, 564
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	3 cut(s)	78, 130, 626
BmrFI	CCNGG	2 cut(s)	505, 564
BmsI	GCATC	2 cut(s)	126, 388
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	368
BpuMI	CCSGG	1 cut(s)	564
BsaAI	YACGTR	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	798
BsaHI	GRCGYC	2 cut(s)	135, 683
BsaI	GGTCTC	1 cut(s)	418
BsaJI	CCNNGG	4 cut(s)	325, 460, 545, 562
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
Bse118I	RCCGGY	4 cut(s)	73, 131, 712, 747
Bse1I	ACTGG	2 cut(s)	385, 540
Bse8I	GATNNNNATC	1 cut(s)	798
BseBI	CCWGG	1 cut(s)	505
BseDI	CCNNGG	4 cut(s)	325, 460, 545, 562
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	1 cut(s)	798
BseLI	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	385, 540
BseRI	GAGGAG	1 cut(s)	69
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	7 cut(s)	45, 273, 282, 284, 373, 412, 784
BsgI	GTGCAG	2 cut(s)	411, 791
Bsh1236I	CGCG	1 cut(s)	375
Bsh1285I	CGRYCG	2 cut(s)	74, 165
BshFI	GGCC	3 cut(s)	73, 131, 333
BsiEI	CGRYCG	2 cut(s)	74, 165
BsiSI	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
BslI	CCNNNNNNNGG	5 cut(s)	69, 154, 546, 599, 600
BsmAI	GTCTC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	73, 131, 333
Bso31I	GGTCTC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	569, 624, 793
BspACI	CCGC	6 cut(s)	274, 330, 358, 457, 622, 674
BspANI	GGCC	3 cut(s)	73, 131, 333
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	78, 130, 626
BspMAI	CTGCAG	1 cut(s)	302
BspPI	GGATC	4 cut(s)	577, 619, 632, 801
BspTNI	GGTCTC	1 cut(s)	418
BsrBI	CCGCTC	1 cut(s)	358
BsrFI	RCCGGY	4 cut(s)	73, 131, 712, 747
BsrI	ACTGG	2 cut(s)	385, 540
BssAI	RCCGGY	4 cut(s)	73, 131, 712, 747
BssECI	CCNNGG	4 cut(s)	325, 460, 545, 562
BssMI	GATC	3 cut(s)	569, 624, 793
BssNI	GRCGYC	2 cut(s)	135, 683
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	460, 545
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	505
Bst4CI	ACNGT	2 cut(s)	521, 659
BstACI	GRCGYC	2 cut(s)	135, 683
BstBAI	YACGTR	1 cut(s)	433
BstC8I	GCNNGC	4 cut(s)	75, 133, 366, 377
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	487
BstFNI	CGCG	1 cut(s)	375
BstKTI	GATC	3 cut(s)	572, 627, 796
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	3 cut(s)	569, 624, 793
BstMCI	CGRYCG	2 cut(s)	74, 165
BstMWI	GCNNNNNNNGC	7 cut(s)	258, 267, 270, 294, 406, 462, 682
BstNI	CCWGG	1 cut(s)	505
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	2 cut(s)	503, 562
BstSFI	CTRYAG	2 cut(s)	298, 517
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	7 cut(s)	45, 273, 282, 284, 373, 412, 784
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	624, 793
BstYI	RGATCY	2 cut(s)	624, 793
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	73, 131, 333
BtsCI	GGATG	1 cut(s)	487
Cac8I	GCNNGC	4 cut(s)	75, 133, 366, 377
CciI	TCATGA	1 cut(s)	33
Cfr10I	RCCGGY	4 cut(s)	73, 131, 712, 747
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	3 cut(s)	124, 431, 691
Csp6I	GTAC	3 cut(s)	436, 528, 751
CviAII	CATG	4 cut(s)	34, 401, 754, 782
CviQI	GTAC	3 cut(s)	436, 528, 751
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	571, 626, 795
DpnII	GATC	3 cut(s)	569, 624, 793
EaeI	YGGCCR	2 cut(s)	71, 331
EagI	CGGCCG	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	637
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	460, 545
Eco31I	GGTCTC	1 cut(s)	418
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	728
Eco72I	CACGTG	1 cut(s)	433
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	503
EcoT14I	CCWWGG	2 cut(s)	460, 545
ErhI	CCWWGG	2 cut(s)	460, 545
FaeI	CATG	4 cut(s)	37, 404, 757, 785
FaiI	YATR	9 cut(s)	35, 236, 395, 402, 574, 596, 755, 759, 783
FatI	CATG	4 cut(s)	33, 400, 753, 781
FauI	CCCGC	1 cut(s)	681
FblI	GTMKAC	2 cut(s)	138, 165
FokI	GGATG	1 cut(s)	474
FspBI	CTAG	3 cut(s)	525, 546, 642
GsuI	CTGGAG	1 cut(s)	368
HaeIII	GGCC	3 cut(s)	73, 131, 333
HapII	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
HgaI	GACGC	3 cut(s)	124, 431, 691
Hin1I	GRCGYC	2 cut(s)	135, 683
Hin1II	CATG	4 cut(s)	37, 404, 757, 785
HincII	GTYRAC	3 cut(s)	88, 139, 166
HindII	GTYRAC	3 cut(s)	88, 139, 166
HinfI	GANTC	7 cut(s)	44, 152, 158, 279, 604, 761, 787
HpaII	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
HphI	GGTGA	2 cut(s)	470, 691
Hpy166II	GTNNAC	4 cut(s)	88, 139, 166, 436
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	34, 310, 653, 791
Hpy8I	GTNNAC	4 cut(s)	88, 139, 166, 436
Hpy99I	CGWCG	2 cut(s)	140, 425
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	521, 659
HpyCH4IV	ACGT	2 cut(s)	39, 432
HpyCH4V	TGCA	4 cut(s)	300, 400, 428, 772
HpyF10VI	GCNNNNNNNGC	7 cut(s)	258, 267, 270, 294, 406, 462, 682
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	39, 432
Hsp92I	GRCGYC	2 cut(s)	135, 683
Hsp92II	CATG	4 cut(s)	37, 404, 757, 785
KroI	GCCGGC	2 cut(s)	73, 131
KroNI	GCCGGC	2 cut(s)	75, 133
Kzo9I	GATC	3 cut(s)	569, 624, 793
LmnI	GCTCC	2 cut(s)	82, 595
Lsp1109I	GCAGC	7 cut(s)	45, 273, 282, 284, 373, 412, 784
LweI	GCATC	2 cut(s)	126, 388
MaeI	CTAG	3 cut(s)	525, 546, 642
MaeII	ACGT	2 cut(s)	39, 432
MaeIII	GTNAC	2 cut(s)	653, 679
MalI	GATC	3 cut(s)	571, 626, 795
MbiI	CCGCTC	1 cut(s)	358
MboI	GATC	3 cut(s)	569, 624, 793
MboII	GAAGA	4 cut(s)	19, 206, 713, 788
MflI	RGATCY	2 cut(s)	624, 793
MluCI	AATT	3 cut(s)	122, 448, 736
MlyI	GAGTC	3 cut(s)	161, 613, 796
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	9, 90, 193, 335, 398
MroNI	GCCGGC	2 cut(s)	73, 131
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	2 cut(s)	58, 676
MspI	CCGG	8 cut(s)	70, 74, 83, 132, 564, 696, 713, 748
MspR9I	CCNGG	2 cut(s)	505, 564
MvaI	CCWGG	1 cut(s)	505
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	7 cut(s)	258, 267, 270, 294, 406, 462, 682
NaeI	GCCGGC	2 cut(s)	75, 133
NciI	CCSGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	569, 624, 793
NgoMIV	GCCGGC	2 cut(s)	73, 131
NlaIII	CATG	4 cut(s)	37, 404, 757, 785
NlaIV	GGNNCC	3 cut(s)	78, 130, 626
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	2 cut(s)	653, 679
NspI	RCATGY	1 cut(s)	757
PagI	TCATGA	1 cut(s)	33
PciI	ACATGT	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 372, 429
PdiI	GCCGGC	2 cut(s)	75, 133
PfeI	GAWTC	4 cut(s)	44, 158, 279, 761
PfoI	TCCNGGA	1 cut(s)	503
PleI	GAGTC	3 cut(s)	160, 612, 795
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
PpsI	GAGTC	3 cut(s)	160, 612, 795
Ppu21I	YACGTR	1 cut(s)	433
PscI	ACATGT	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	503
PspCI	CACGTG	1 cut(s)	433
PspGI	CCWGG	1 cut(s)	503
PspN4I	GGNNCC	3 cut(s)	78, 130, 626
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	500, 532
PstI	CTGCAG	1 cut(s)	302
PsuI	RGATCY	2 cut(s)	624, 793
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	3 cut(s)	437, 529, 752
RsaNI	GTAC	3 cut(s)	436, 528, 751
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	2 cut(s)	137, 164
Sau3AI	GATC	3 cut(s)	569, 624, 793
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	3 cut(s)	161, 613, 796
ScrFI	CCNGG	2 cut(s)	505, 564
SetI	ASST	5 cut(s)	42, 60, 435, 497, 551
SfaNI	GCATC	2 cut(s)	126, 388
SfcI	CTRYAG	2 cut(s)	298, 517
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	122, 448, 736
SsiI	CCGC	6 cut(s)	274, 330, 358, 457, 622, 674
SspMI	CTAG	3 cut(s)	525, 546, 642
StyD4I	CCNGG	2 cut(s)	503, 562
StyI	CCWWGG	2 cut(s)	460, 545
TaaI	ACNGT	2 cut(s)	521, 659
TaiI	ACGT	2 cut(s)	42, 435
TaqI	TCGA	5 cut(s)	120, 138, 165, 282, 764
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	122, 448, 736
TatI	WGTACW	1 cut(s)	527
TauI	GCSGC	4 cut(s)	276, 333, 361, 459
TfiI	GAWTC	4 cut(s)	44, 158, 279, 761
TseFI	GTSAC	2 cut(s)	653, 679
TseI	GCWGC	7 cut(s)	58, 261, 270, 297, 361, 425, 772
Tsp45I	GTSAC	2 cut(s)	653, 679
TspDTI	ATGAA	6 cut(s)	22, 50, 461, 683, 774, 788
TspGWI	ACGGA	2 cut(s)	489, 570
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	757
XmaJI	CCTAGG	1 cut(s)	545
XmiI	GTMKAC	2 cut(s)	138, 165
XspI	CTAG	3 cut(s)	525, 546, 642
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.