Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

24595668 .. 24596081

Gene Structure 414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG254500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGTGCATGGAGGGCTGGTCTCCCACGACGCTGCACACGTGTACGGCTTGATGAATTACAGCCGCCTTGGCTCTGCTCATCATCACCATCATCATCCCACCTATCCGTCCTGGAACACTAACTACAGTTCTAGTACTACTACTACCAGTCCTAGGTTTTACGGAAGCCCCGGTGGATCATACGGCTCTCAATCTGCTCCCATAAACGGGAGTCCTTTGGGCTTGTGGCGGATCCCATCTGCTAACCCTAGTTTCAATCGTGACCGTTCGTTGATGAACCCACTGGTGACTCCGTTGTTCGCCGGAGAAGAACTGAAGCCGGTTGTTGTTGGTGGGTCTGGTAATTCTCAAAGCCGGTACATGTATGAATCGAGTGTGCAGCAAGACCATGTGAGTCTGGATCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

137

Amino Acids

14.9

Weight (kDa)

7.2

Isoelectric Point (pI)

52.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	64, 229
AclWI	GGATC	4 cut(s)	184, 226, 239, 408
AcuI	CTGAAG	1 cut(s)	335
AcvI	CACGTG	1 cut(s)	40
AfaI	GTAC	3 cut(s)	44, 136, 359
AfiI	CCNNNNNNNGG	3 cut(s)	153, 206, 207
AflIII	ACRYGT	3 cut(s)	37, 39, 360
AgsI	TTSAA	1 cut(s)	256
AjnI	CCWGG	1 cut(s)	110
Alw26I	GTCTC	1 cut(s)	25
AlwI	GGATC	4 cut(s)	184, 226, 239, 408
ApeKI	GCWGC	2 cut(s)	32, 379
AspA2I	CCTAGG	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	77, 298
AvrII	CCTAGG	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	231
BbrPI	CACGTG	1 cut(s)	40
BbvI	GCAGC	2 cut(s)	19, 391
BccI	CCATC	2 cut(s)	96, 244
BceAI	ACGGC	2 cut(s)	61, 199
BciT130I	CCWGG	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	171
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	132, 153, 249
BfmI	CTRYAG	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	69
BisI	GCNGC	3 cut(s)	33, 64, 380
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	3 cut(s)	34, 65, 381
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	112, 171
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	112, 171
BpuMI	CCSGG	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	67, 152, 169
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	153, 206, 207
Bse118I	RCCGGY	2 cut(s)	319, 354
Bse1I	ACTGG	2 cut(s)	147, 288
Bse8I	GATNNNNATC	1 cut(s)	405
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	3 cut(s)	67, 152, 169
BseGI	GGATG	1 cut(s)	94
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	3 cut(s)	153, 206, 207
BseNI	ACTGG	2 cut(s)	147, 288
BseXI	GCAGC	2 cut(s)	19, 391
BsgI	GTGCAG	2 cut(s)	18, 398
BsiSI	CCGG	4 cut(s)	171, 303, 320, 355
BslI	CCNNNNNNNGG	3 cut(s)	153, 206, 207
BsmAI	GTCTC	1 cut(s)	25
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	3 cut(s)	176, 231, 400
BspACI	CCGC	2 cut(s)	64, 229
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	4 cut(s)	184, 226, 239, 408
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	319, 354
BsrI	ACTGG	2 cut(s)	147, 288
BssAI	RCCGGY	2 cut(s)	319, 354
BssECI	CCNNGG	3 cut(s)	67, 152, 169
BssMI	GATC	3 cut(s)	176, 231, 400
BssT1I	CCWWGG	2 cut(s)	67, 152
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	2 cut(s)	128, 266
BstBAI	YACGTR	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	3 cut(s)	179, 234, 403
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	3 cut(s)	176, 231, 400
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 69
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	364
BstSCI	CCNGG	2 cut(s)	110, 169
BstSFI	CTRYAG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	19, 391
BstX2I	RGATCY	2 cut(s)	231, 400
BstYI	RGATCY	2 cut(s)	231, 400
BtsCI	GGATG	1 cut(s)	94
BtsIMutI	CAGTG	1 cut(s)	281
Cfr10I	RCCGGY	2 cut(s)	319, 354
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	3 cut(s)	43, 135, 358
CviAII	CATG	3 cut(s)	8, 361, 389
CviJI	RGCY	9 cut(s)	16, 48, 63, 72, 168, 186, 222, 319, 354
CviKI_1	RGCY	9 cut(s)	16, 48, 63, 72, 168, 186, 222, 319, 354
CviQI	GTAC	3 cut(s)	43, 135, 358
DpnI	GATC	3 cut(s)	178, 233, 402
DpnII	GATC	3 cut(s)	176, 231, 400
EciI	GGCGGA	1 cut(s)	244
Eco130I	CCWWGG	2 cut(s)	67, 152
Eco31I	GGTCTC	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	335
Eco72I	CACGTG	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	2 cut(s)	67, 152
ErhI	CCWWGG	2 cut(s)	67, 152
FaeI	CATG	3 cut(s)	11, 364, 392
FaiI	YATR	6 cut(s)	9, 181, 203, 362, 366, 390
FatI	CATG	3 cut(s)	7, 360, 388
Fnu4HI	GCNGC	3 cut(s)	33, 64, 380
FokI	GGATG	1 cut(s)	81
Fsp4HI	GCNGC	3 cut(s)	33, 64, 380
FspBI	CTAG	3 cut(s)	132, 153, 249
GluI	GCNGC	3 cut(s)	33, 64, 380
HapII	CCGG	4 cut(s)	171, 303, 320, 355
HgaI	GACGC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	11, 364, 392
HinfI	GANTC	4 cut(s)	211, 289, 368, 394
HpaII	CCGG	4 cut(s)	171, 303, 320, 355
HphI	GGTGA	2 cut(s)	77, 298
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188III	TCNNGA	2 cut(s)	260, 398
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	32
HpyCH4III	ACNGT	2 cut(s)	128, 266
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	7, 35, 379
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 69
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	11, 364, 392
Kzo9I	GATC	3 cut(s)	176, 231, 400
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	2 cut(s)	19, 391
MaeI	CTAG	3 cut(s)	132, 153, 249
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	260, 286
MalI	GATC	3 cut(s)	178, 233, 402
MboI	GATC	3 cut(s)	176, 231, 400
MboII	GAAGA	2 cut(s)	320, 395
MflI	RGATCY	2 cut(s)	231, 400
MluCI	AATT	2 cut(s)	55, 343
MlyI	GAGTC	3 cut(s)	220, 283, 403
MnlI	CCTC	1 cut(s)	5
MspI	CCGG	4 cut(s)	171, 303, 320, 355
MspR9I	CCNGG	2 cut(s)	112, 171
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	13, 69
NciI	CCSGG	1 cut(s)	171
NdeII	GATC	3 cut(s)	176, 231, 400
NlaIII	CATG	3 cut(s)	11, 364, 392
NlaIV	GGNNCC	1 cut(s)	233
NmuCI	GTSAC	2 cut(s)	260, 286
NspI	RCATGY	1 cut(s)	364
PciI	ACATGT	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	34, 65, 381
PleI	GAGTC	3 cut(s)	219, 283, 402
PmaCI	CACGTG	1 cut(s)	40
PmlI	CACGTG	1 cut(s)	40
PpsI	GAGTC	3 cut(s)	219, 283, 402
Ppu21I	YACGTR	1 cut(s)	40
PscI	ACATGT	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	233
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PsuI	RGATCY	2 cut(s)	231, 400
RsaI	GTAC	3 cut(s)	44, 136, 359
RsaNI	GTAC	3 cut(s)	43, 135, 358
SatI	GCNGC	3 cut(s)	33, 64, 380
Sau3AI	GATC	3 cut(s)	176, 231, 400
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	3 cut(s)	220, 283, 403
ScrFI	CCNGG	2 cut(s)	112, 171
SetI	ASST	3 cut(s)	42, 104, 158
SfcI	CTRYAG	1 cut(s)	124
Sse9I	AATT	2 cut(s)	55, 343
SsiI	CCGC	2 cut(s)	64, 229
SspMI	CTAG	3 cut(s)	132, 153, 249
StyD4I	CCNGG	2 cut(s)	110, 169
StyI	CCWWGG	2 cut(s)	67, 152
TaaI	ACNGT	2 cut(s)	128, 266
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	371
TasI	AATT	2 cut(s)	55, 343
TatI	WGTACW	1 cut(s)	134
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	2 cut(s)	260, 286
TseI	GCWGC	2 cut(s)	32, 379
Tsp45I	GTSAC	2 cut(s)	260, 286
TspDTI	ATGAA	4 cut(s)	68, 290, 381, 395
TspGWI	ACGGA	3 cut(s)	96, 177, 282
TspRI	CASTG	1 cut(s)	288
XceI	RCATGY	1 cut(s)	364
XmaJI	CCTAGG	1 cut(s)	152
XspI	CTAG	3 cut(s)	132, 153, 249
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.