Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

4569663 .. 4570626

Gene Structure 964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGACAAGGTTGAGAGAGAGACTCAGGATTTCATGAACGTAGAGTCATTCTCTCAGCTACCCTTCATCCGCCCAGCCCCTCCACTCAACAAAGAAAAGGGCATTCGGCTCTTCGGCATAGAATTTGGCACCGACACCGCCACTGACGACTCGGAGTCCCTTGATTACACCAATGCGTCGGAAGACACAAAAAGGAACAACATCAACACCAACACCACCGCCAACAACAACAATAACAACAAAAATAATAACAACGAAAACGGAAGTGAGAGCAGCCGGAGATTCGAATGCCATTACTGCTGCCGAAACTTCCCAACCTCCCAAGCCCTTGGGGGACACCAGAACGCGCACAAGAGAGAGCGCCAGCACGCAAAACGCGAGCACCTCCAGTCGGCCATGGTGCATGCCGGAGGCCTATCTCATGACGCACACCACGTGTACGGCTTGCTGAACTACACAAGACTTGGCTCCTCAGCTCTTCATCATCCCAGTACTAATTATCCACCATGGAATATTACTAACTCTAGCTCTAGTATAACTAGTGCTCATCAGCAGCATCCTCACGCTAGGTTTTATGGAAGCTCTGGTGGTACGTATGGCACACAATCTGCTCCAATAAATGGGAGCCCCTTGGCCTTGTGGCGGATCCCAGCCGTTCAAGGTGCTAACCCTAGTTTCAACCGTGACCGTTCAATGAATTTGATCTCCGGCGGGGAGGAAATGATGGTGTCCGGGGTCGGTAGTGGGTCGTCTGGTGGTCATCAAGGGCGGTACCTGTATGACTCGTCGATGGCTAGTGTGCAAGATCATAAAGAGAATTTGAGTGTTGAAATTAATTCTCATGATGATGATGGTGGAAGAGAAGTTTTAATTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

293

Amino Acids

32.14

Weight (kDa)

6.26

Isoelectric Point (pI)

53.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	771
AccB1I	GGYRCC	2 cut(s)	128, 771
AccB7I	CCANNNNNTGG	1 cut(s)	620
AccII	CGCG	2 cut(s)	347, 378
AciI	CCGC	6 cut(s)	70, 138, 219, 643, 711, 769
AclWI	GGATC	2 cut(s)	640, 653
AcoI	YGGCCR	1 cut(s)	393
AcsI	RAATTY	3 cut(s)	122, 697, 817
AcvI	CACGTG	1 cut(s)	436
AdeI	CACNNNGTG	1 cut(s)	436
AfaI	GTAC	4 cut(s)	440, 493, 592, 773
AfiI	CCNNNNNNNGG	3 cut(s)	391, 620, 642
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	4 cut(s)	659, 679, 693, 830
AhdI	GACNNNNNGTC	1 cut(s)	154
AhlI	ACTAGT	1 cut(s)	539
AluBI	AGCT	4 cut(s)	58, 476, 528, 582
AluI	AGCT	4 cut(s)	58, 476, 528, 582
Alw21I	GWGCWC	2 cut(s)	384, 547
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	640, 653
AoxI	GGCC	3 cut(s)	393, 412, 633
ApeKI	GCWGC	3 cut(s)	273, 300, 553
ApoI	RAATTY	3 cut(s)	122, 697, 817
AseI	ATTAAT	1 cut(s)	834
Asp718I	GGTACC	1 cut(s)	771
AspLEI	GCGC	2 cut(s)	349, 363
AsuC2I	CCSGG	1 cut(s)	733
AsuII	TTCGAA	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	645
BanI	GGYRCC	2 cut(s)	128, 771
BanII	GRGCYC	1 cut(s)	629
BbrPI	CACGTG	1 cut(s)	436
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	384, 547
BbvCI	CCTCAGC	1 cut(s)	472
BbvI	GCAGC	3 cut(s)	285, 287, 565
BccI	CCATC	3 cut(s)	718, 784, 845
BceAI	ACGGC	2 cut(s)	457, 638
BcnI	CCSGG	1 cut(s)	733
BcoDI	GTCTC	1 cut(s)	14
BcuI	ACTAGT	1 cut(s)	539
BfaI	CTAG	6 cut(s)	525, 531, 540, 567, 672, 795
BfoI	RGCGCY	1 cut(s)	364
BisI	GCNGC	3 cut(s)	274, 301, 554
BlsI	GCNGC	3 cut(s)	275, 302, 555
BmcAI	AGTACT	1 cut(s)	493
Bme1390I	CCNGG	1 cut(s)	733
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmiI	GGNNCC	5 cut(s)	130, 469, 626, 647, 773
BmrFI	CCNGG	1 cut(s)	733
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	565
BmuI	ACTGGG	1 cut(s)	483
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 35, 67
BpmI	CTGGAG	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	472
Bpu14I	TTCGAA	1 cut(s)	285
BpuMI	CCSGG	1 cut(s)	733
BsaAI	YACGTR	2 cut(s)	436, 594
BsaJI	CCNNGG	5 cut(s)	328, 396, 506, 630, 732
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 620, 642
Bse1I	ACTGG	2 cut(s)	388, 489
BseDI	CCNNGG	5 cut(s)	328, 396, 506, 630, 732
BseGI	GGATG	3 cut(s)	66, 484, 556
BseLI	CCNNNNNNNGG	3 cut(s)	391, 620, 642
BseMII	CTCAG	3 cut(s)	38, 68, 486
BseNI	ACTGG	2 cut(s)	388, 489
BseRI	GAGGAG	1 cut(s)	460
BseXI	GCAGC	3 cut(s)	285, 287, 565
BseYI	CCCAGC	2 cut(s)	73, 649
Bsh1236I	CGCG	2 cut(s)	347, 378
BshFI	GGCC	3 cut(s)	395, 414, 635
BshNI	GGYRCC	2 cut(s)	128, 771
BsiHKAI	GWGCWC	2 cut(s)	384, 547
BsiSI	CCGG	4 cut(s)	277, 408, 708, 732
BslFI	GGGAC	2 cut(s)	142, 348
BslI	CCNNNNNNNGG	3 cut(s)	391, 620, 642
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	142, 348
BsmI	GAATGC	2 cut(s)	102, 293
BsnI	GGCC	3 cut(s)	395, 414, 635
Bsp119I	TTCGAA	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	384, 547, 629
Bsp143I	GATC	3 cut(s)	645, 702, 805
Bsp19I	CCATGG	2 cut(s)	396, 506
BspACI	CCGC	6 cut(s)	70, 138, 219, 643, 711, 769
BspANI	GGCC	3 cut(s)	395, 414, 635
BspCNI	CTCAG	3 cut(s)	37, 67, 485
BspFNI	CGCG	2 cut(s)	347, 378
BspHI	TCATGA	3 cut(s)	33, 421, 841
BspLI	GGNNCC	5 cut(s)	130, 469, 626, 647, 773
BspPI	GGATC	2 cut(s)	640, 653
BspQI	GCTCTTC	2 cut(s)	116, 483
BspT104I	TTCGAA	1 cut(s)	285
BspT107I	GGYRCC	2 cut(s)	128, 771
BsrI	ACTGG	2 cut(s)	388, 489
BssECI	CCNNGG	5 cut(s)	328, 396, 506, 630, 732
BssMI	GATC	3 cut(s)	645, 702, 805
BssT1I	CCWWGG	4 cut(s)	328, 396, 506, 630
Bst4CI	ACNGT	2 cut(s)	683, 689
Bst6I	CTCTTC	3 cut(s)	116, 483, 853
BstBAI	YACGTR	2 cut(s)	436, 594
BstBI	TTCGAA	1 cut(s)	285
BstC8I	GCNNGC	5 cut(s)	365, 369, 380, 405, 446
BstDEI	CTNAG	3 cut(s)	24, 54, 472
BstDSI	CCRYGG	2 cut(s)	396, 506
BstF5I	GGATG	3 cut(s)	66, 484, 556
BstFNI	CGCG	2 cut(s)	347, 378
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	2 cut(s)	349, 363
BstKTI	GATC	3 cut(s)	648, 705, 808
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	3 cut(s)	645, 702, 805
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	731
BstSNI	TACGTA	1 cut(s)	594
BstUI	CGCG	2 cut(s)	347, 378
BstV1I	GCAGC	3 cut(s)	285, 287, 565
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	395, 414, 635
BtgI	CCRYGG	2 cut(s)	396, 506
BtsCI	GGATG	3 cut(s)	66, 484, 556
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	5 cut(s)	365, 369, 380, 405, 446
CciI	TCATGA	3 cut(s)	33, 421, 841
CfoI	GCGC	2 cut(s)	349, 363
CseI	GACGC	2 cut(s)	165, 434
Csp6I	GTAC	4 cut(s)	439, 492, 591, 772
CviAII	CATG	6 cut(s)	34, 397, 404, 422, 507, 842
CviQI	GTAC	4 cut(s)	439, 492, 591, 772
DdeI	CTNAG	3 cut(s)	24, 54, 472
DpnI	GATC	3 cut(s)	647, 704, 807
DpnII	GATC	3 cut(s)	645, 702, 805
DraIII	CACNNNGTG	1 cut(s)	436
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	393
Eam1104I	CTCTTC	3 cut(s)	116, 483, 853
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	3 cut(s)	116, 483, 853
EciI	GGCGGA	2 cut(s)	59, 658
Eco105I	TACGTA	1 cut(s)	594
Eco130I	CCWWGG	4 cut(s)	328, 396, 506, 630
Eco147I	AGGCCT	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	629
Eco72I	CACGTG	1 cut(s)	436
EcoT14I	CCWWGG	4 cut(s)	328, 396, 506, 630
EcoT38I	GRGCYC	1 cut(s)	629
ErhI	CCWWGG	4 cut(s)	328, 396, 506, 630
FaeI	CATG	6 cut(s)	37, 400, 407, 425, 510, 845
FaqI	GGGAC	2 cut(s)	142, 348
FatI	CATG	6 cut(s)	33, 396, 403, 421, 506, 841
FauI	CCCGC	1 cut(s)	704
Fnu4HI	GCNGC	3 cut(s)	274, 301, 554
FokI	GGATG	3 cut(s)	53, 471, 543
FriOI	GRGCYC	1 cut(s)	629
Fsp4HI	GCNGC	3 cut(s)	274, 301, 554
FspBI	CTAG	6 cut(s)	525, 531, 540, 567, 672, 795
GlaI	GCGC	2 cut(s)	348, 362
GluI	GCNGC	3 cut(s)	274, 301, 554
GsaI	CCCAGC	2 cut(s)	77, 653
GsuI	CTGGAG	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	3 cut(s)	395, 414, 635
HapII	CCGG	4 cut(s)	277, 408, 708, 732
HgaI	GACGC	2 cut(s)	165, 434
HhaI	GCGC	2 cut(s)	349, 363
Hin1II	CATG	6 cut(s)	37, 400, 407, 425, 510, 845
Hin6I	GCGC	2 cut(s)	347, 361
HinP1I	GCGC	2 cut(s)	347, 361
HinfI	GANTC	6 cut(s)	22, 44, 149, 155, 282, 782
HpaII	CCGG	4 cut(s)	277, 408, 708, 732
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	154, 181
Hpy188III	TCNNGA	4 cut(s)	26, 34, 422, 842
Hpy8I	GTNNAC	1 cut(s)	439
Hpy99I	CGWCG	2 cut(s)	181, 790
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	2 cut(s)	683, 689
HpyCH4IV	ACGT	3 cut(s)	39, 435, 593
HpyCH4V	TGCA	2 cut(s)	403, 802
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	3 cut(s)	24, 54, 472
HpySE526I	ACGT	3 cut(s)	39, 435, 593
Hsp92II	CATG	6 cut(s)	37, 400, 407, 425, 510, 845
HspAI	GCGC	2 cut(s)	347, 361
KpnI	GGTACC	1 cut(s)	775
Kzo9I	GATC	3 cut(s)	645, 702, 805
LguI	GCTCTTC	2 cut(s)	116, 483
LmnI	GCTCC	3 cut(s)	473, 616, 624
Lsp1109I	GCAGC	3 cut(s)	285, 287, 565
LweI	GCATC	1 cut(s)	565
MaeI	CTAG	6 cut(s)	525, 531, 540, 567, 672, 795
MaeII	ACGT	3 cut(s)	39, 435, 593
MaeIII	GTNAC	1 cut(s)	683
MalI	GATC	3 cut(s)	647, 704, 807
MboI	GATC	3 cut(s)	645, 702, 805
MboII	GAAGA	4 cut(s)	103, 194, 470, 870
MflI	RGATCY	1 cut(s)	645
MhlI	GDGCHC	3 cut(s)	384, 547, 629
MluCI	AATT	7 cut(s)	122, 496, 697, 817, 831, 835, 870
MlyI	GAGTC	5 cut(s)	16, 53, 143, 164, 776
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	90, 328, 395, 404, 481, 570, 709
MseI	TTAA	2 cut(s)	834, 869
MslI	CAYNNNNRTG	1 cut(s)	846
MspI	CCGG	4 cut(s)	277, 408, 708, 732
MspR9I	CCNGG	1 cut(s)	733
Mva1269I	GAATGC	2 cut(s)	102, 293
MvnI	CGCG	2 cut(s)	347, 378
MwoI	GCNNNNNNNGC	1 cut(s)	297
NciI	CCSGG	1 cut(s)	733
NcoI	CCATGG	2 cut(s)	396, 506
NdeII	GATC	3 cut(s)	645, 702, 805
NlaIII	CATG	6 cut(s)	37, 400, 407, 425, 510, 845
NlaIV	GGNNCC	5 cut(s)	130, 469, 626, 647, 773
NmuCI	GTSAC	1 cut(s)	683
NspI	RCATGY	1 cut(s)	407
NspV	TTCGAA	1 cut(s)	285
PaeI	GCATGC	1 cut(s)	407
PagI	TCATGA	3 cut(s)	33, 421, 841
PceI	AGGCCT	1 cut(s)	414
PciSI	GCTCTTC	2 cut(s)	116, 483
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 432
PctI	GAATGC	2 cut(s)	102, 293
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	620
PkrI	GCNGC	3 cut(s)	275, 302, 555
PleI	GAGTC	5 cut(s)	16, 52, 143, 163, 776
PmaCI	CACGTG	1 cut(s)	436
PmlI	CACGTG	1 cut(s)	436
PpsI	GAGTC	5 cut(s)	16, 52, 143, 163, 776
Ppu21I	YACGTR	2 cut(s)	436, 594
PshBI	ATTAAT	1 cut(s)	834
PspCI	CACGTG	1 cut(s)	436
PspFI	CCCAGC	2 cut(s)	73, 649
PspN4I	GGNNCC	5 cut(s)	130, 469, 626, 647, 773
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	4 cut(s)	440, 493, 592, 773
RsaNI	GTAC	4 cut(s)	439, 492, 591, 772
RseI	CAYNNNNRTG	1 cut(s)	846
SapI	GCTCTTC	2 cut(s)	116, 483
SaqAI	TTAA	2 cut(s)	834, 869
SatI	GCNGC	3 cut(s)	274, 301, 554
Sau3AI	GATC	3 cut(s)	645, 702, 805
ScaI	AGTACT	1 cut(s)	493
SchI	GAGTC	5 cut(s)	16, 53, 143, 164, 776
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	3 cut(s)	384, 547, 629
SfaNI	GCATC	1 cut(s)	565
SfuI	TTCGAA	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	846
SnaBI	TACGTA	1 cut(s)	594
SpeI	ACTAGT	1 cut(s)	539
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	7 cut(s)	122, 496, 697, 817, 831, 835, 870
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	6 cut(s)	70, 138, 219, 643, 711, 769
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	6 cut(s)	525, 531, 540, 567, 672, 795
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	1 cut(s)	731
StyI	CCWWGG	4 cut(s)	328, 396, 506, 630
TaaI	ACNGT	2 cut(s)	683, 689
TaiI	ACGT	3 cut(s)	42, 438, 596
TaqI	TCGA	2 cut(s)	285, 788
TasI	AATT	7 cut(s)	122, 496, 697, 817, 831, 835, 870
TatI	WGTACW	1 cut(s)	491
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	834, 869
Tru9I	TTAA	2 cut(s)	834, 869
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	3 cut(s)	273, 300, 553
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	5 cut(s)	22, 50, 55, 470, 710
TspGWI	ACGGA	1 cut(s)	276
TspRI	CASTG	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	620
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	3 cut(s)	122, 697, 817
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	6 cut(s)	525, 531, 540, 567, 672, 795
ZrmI	AGTACT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.