Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

24756879 .. 24757836

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44422

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGAAGATTGAGAGGGAAACCCAAGACTTCATGAACGTGGAATCCTTCTCTCAGCTGCCCTTTATCCGGCCGGCTCCTCCGGTCAACAAAGAAAAGGGCATTAGGCTCTTTGGCATCGAATTCGGGGCCGGCGTCGACACCAACCACGAGTCGGAATCGGTCGACAACAATGTGAGTGAGAACGGGAAAGAAGACGAGGGCAACAAGCACACCAACACAAACATAAGCAACAGCAACAGCGAAAATGGCAGCGAGAGCAGCCGCAGATTCGAGTGCCATTACTGCTGCAGGAACTTCCCGACCAGCCAAGCCCTCGGCGGCCACCAAAACGCACACAAAAGAGAGCGGCAGCACGCCAAACGCGAGCATCTCCAGTCTGCTATGGTGCATGGAGGGCTGGTCTCCCACGACGCTGCACACGTGTACGGCTTGATGAATTACAGCCGCCTTGGCTCTGCTCATCATCACCATCATCATCCCACCTATCCGTCCTGGAACACTAACTACAGTTCTAGTACTACTACTACCAGTCCTAGGTTTTACGGAAGCCCCGGTGGATCATACGGCTCTCAATCTGCTCCCATAAACGGGAGTCCTTTGGGCTTGTGGCGGATCCCATCTGCTAACCCTAGTTTCAATCGTGACCGTTCGTTGATGAACCCACTGGTGACTCCGTTGTTCGCCGGAGAAGAACTGAAGCCGGTTGTTGTTGGTGGGTCTGGTAATTCTCAAAGCCGGTACATGTATGAATCGAGTGTGCAGCAAGACCATGTGAGTCTGGATCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

265

Amino Acids

29.4

Weight (kDa)

6.51

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	349
AccI	GTMKAC	2 cut(s)	138, 165
AccII	CGCG	1 cut(s)	366
AciI	CCGC	5 cut(s)	265, 321, 349, 448, 613
AclWI	GGATC	4 cut(s)	568, 610, 623, 792
AcoI	YGGCCR	2 cut(s)	71, 322
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	719
AcvI	CACGTG	1 cut(s)	424
AcyI	GRCGYC	1 cut(s)	135
AfaI	GTAC	3 cut(s)	428, 520, 743
AfiI	CCNNNNNNNGG	5 cut(s)	69, 154, 537, 590, 591
AflIII	ACRYGT	3 cut(s)	421, 423, 744
AgsI	TTSAA	1 cut(s)	640
AjnI	CCWGG	1 cut(s)	494
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	409
AlwI	GGATC	4 cut(s)	568, 610, 623, 792
AoxI	GGCC	3 cut(s)	71, 129, 322
ApeKI	GCWGC	7 cut(s)	58, 252, 261, 288, 352, 416, 763
ApoI	RAATTY	1 cut(s)	122
AspA2I	CCTAGG	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	2 cut(s)	461, 682
AvrII	CCTAGG	1 cut(s)	536
BamHI	GGATCC	1 cut(s)	615
BauI	CACGAG	1 cut(s)	149
BbrPI	CACGTG	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	201
BbvI	GCAGC	7 cut(s)	45, 264, 273, 275, 364, 403, 775
BccI	CCATC	2 cut(s)	480, 628
BceAI	ACGGC	2 cut(s)	445, 583
BcgI	CGANNNNNNTGC	2 cut(s)	106, 140
BciT130I	CCWGG	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	409
BfaI	CTAG	3 cut(s)	516, 537, 633
BfmI	CTRYAG	2 cut(s)	289, 508
BglI	GCCNNNNNGGC	1 cut(s)	453
BlnI	CCTAGG	1 cut(s)	536
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	2 cut(s)	496, 555
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	3 cut(s)	78, 130, 617
BmrFI	CCNGG	2 cut(s)	496, 555
BmsI	GCATC	2 cut(s)	126, 379
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	555
BsaAI	YACGTR	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	789
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	409
BsaJI	CCNNGG	4 cut(s)	316, 451, 536, 553
BsaWI	WCCGGW	1 cut(s)	82
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 154, 537, 590, 591
Bse118I	RCCGGY	4 cut(s)	73, 131, 703, 738
Bse1I	ACTGG	3 cut(s)	376, 531, 672
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	496
BseDI	CCNNGG	4 cut(s)	316, 451, 536, 553
BseGI	GGATG	1 cut(s)	478
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	5 cut(s)	69, 154, 537, 590, 591
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	376, 531, 672
BseRI	GAGGAG	1 cut(s)	69
BseX3I	CGGCCG	1 cut(s)	71
BseXI	GCAGC	7 cut(s)	45, 264, 273, 275, 364, 403, 775
BsgI	GTGCAG	2 cut(s)	402, 782
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	2 cut(s)	74, 165
BshFI	GGCC	3 cut(s)	73, 131, 324
BsiEI	CGRYCG	2 cut(s)	74, 165
BsiSI	CCGG	8 cut(s)	70, 74, 83, 132, 555, 687, 704, 739
BslI	CCNNNNNNNGG	5 cut(s)	69, 154, 537, 590, 591
BsmAI	GTCTC	1 cut(s)	409
BsnI	GGCC	3 cut(s)	73, 131, 324
Bso31I	GGTCTC	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	560, 615, 784
BspACI	CCGC	5 cut(s)	265, 321, 349, 448, 613
BspANI	GGCC	3 cut(s)	73, 131, 324
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	78, 130, 617
BspMAI	CTGCAG	1 cut(s)	293
BspPI	GGATC	4 cut(s)	568, 610, 623, 792
BspTNI	GGTCTC	1 cut(s)	409
BsrBI	CCGCTC	1 cut(s)	349
BsrFI	RCCGGY	4 cut(s)	73, 131, 703, 738
BsrI	ACTGG	3 cut(s)	376, 531, 672
BssAI	RCCGGY	4 cut(s)	73, 131, 703, 738
BssECI	CCNNGG	4 cut(s)	316, 451, 536, 553
BssMI	GATC	3 cut(s)	560, 615, 784
BssNI	GRCGYC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	149
BssT1I	CCWWGG	2 cut(s)	451, 536
Bst2BI	CACGAG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	496
Bst4CI	ACNGT	2 cut(s)	512, 650
BstACI	GRCGYC	1 cut(s)	135
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	4 cut(s)	75, 133, 357, 368
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	478
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	3 cut(s)	563, 618, 787
BstMAI	GTCTC	1 cut(s)	409
BstMBI	GATC	3 cut(s)	560, 615, 784
BstMCI	CGRYCG	2 cut(s)	74, 165
BstMWI	GCNNNNNNNGC	6 cut(s)	249, 258, 261, 285, 397, 453
BstNI	CCWGG	1 cut(s)	496
BstNSI	RCATGY	1 cut(s)	748
BstSCI	CCNGG	2 cut(s)	494, 553
BstSFI	CTRYAG	2 cut(s)	289, 508
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	7 cut(s)	45, 264, 273, 275, 364, 403, 775
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	615, 784
BstYI	RGATCY	2 cut(s)	615, 784
BstZI	CGGCCG	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	73, 131, 324
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	665
Cac8I	GCNNGC	4 cut(s)	75, 133, 357, 368
CciI	TCATGA	1 cut(s)	33
Cfr10I	RCCGGY	4 cut(s)	73, 131, 703, 738
Cfr13I	GGNCC	1 cut(s)	129
CseI	GACGC	2 cut(s)	124, 422
Csp6I	GTAC	3 cut(s)	427, 519, 742
CviAII	CATG	4 cut(s)	34, 392, 745, 773
CviQI	GTAC	3 cut(s)	427, 519, 742
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	3 cut(s)	562, 617, 786
DpnII	GATC	3 cut(s)	560, 615, 784
EaeI	YGGCCR	2 cut(s)	71, 322
EagI	CGGCCG	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	628
EclXI	CGGCCG	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	451, 536
Eco31I	GGTCTC	1 cut(s)	409
Eco52I	CGGCCG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	719
Eco72I	CACGTG	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	451, 536
ErhI	CCWWGG	2 cut(s)	451, 536
FaeI	CATG	4 cut(s)	37, 395, 748, 776
FaiI	YATR	9 cut(s)	35, 227, 386, 393, 565, 587, 746, 750, 774
FatI	CATG	4 cut(s)	33, 391, 744, 772
FblI	GTMKAC	2 cut(s)	138, 165
FokI	GGATG	1 cut(s)	465
FspBI	CTAG	3 cut(s)	516, 537, 633
GsuI	CTGGAG	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	73, 131, 324
HapII	CCGG	8 cut(s)	70, 74, 83, 132, 555, 687, 704, 739
HgaI	GACGC	2 cut(s)	124, 422
Hin1I	GRCGYC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	37, 395, 748, 776
HincII	GTYRAC	3 cut(s)	88, 139, 166
HindII	GTYRAC	3 cut(s)	88, 139, 166
HinfI	GANTC	8 cut(s)	44, 152, 158, 270, 595, 673, 752, 778
HpaII	CCGG	8 cut(s)	70, 74, 83, 132, 555, 687, 704, 739
HphI	GGTGA	2 cut(s)	461, 682
Hpy166II	GTNNAC	4 cut(s)	88, 139, 166, 427
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	34, 301, 644, 782
Hpy8I	GTNNAC	4 cut(s)	88, 139, 166, 427
Hpy99I	CGWCG	2 cut(s)	140, 416
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	2 cut(s)	512, 650
HpyCH4IV	ACGT	2 cut(s)	39, 423
HpyCH4V	TGCA	4 cut(s)	291, 391, 419, 763
HpyF10VI	GCNNNNNNNGC	6 cut(s)	249, 258, 261, 285, 397, 453
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	39, 423
Hsp92I	GRCGYC	1 cut(s)	135
Hsp92II	CATG	4 cut(s)	37, 395, 748, 776
KroI	GCCGGC	2 cut(s)	73, 131
KroNI	GCCGGC	2 cut(s)	75, 133
Kzo9I	GATC	3 cut(s)	560, 615, 784
LmnI	GCTCC	2 cut(s)	82, 586
Lsp1109I	GCAGC	7 cut(s)	45, 264, 273, 275, 364, 403, 775
LweI	GCATC	2 cut(s)	126, 379
MaeI	CTAG	3 cut(s)	516, 537, 633
MaeII	ACGT	2 cut(s)	39, 423
MaeIII	GTNAC	2 cut(s)	644, 670
MalI	GATC	3 cut(s)	562, 617, 786
MbiI	CCGCTC	1 cut(s)	349
MboI	GATC	3 cut(s)	560, 615, 784
MboII	GAAGA	4 cut(s)	19, 206, 704, 779
MflI	RGATCY	2 cut(s)	615, 784
MluCI	AATT	3 cut(s)	122, 439, 727
MlyI	GAGTC	4 cut(s)	161, 604, 667, 787
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	5 cut(s)	9, 90, 193, 326, 389
MroNI	GCCGGC	2 cut(s)	73, 131
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	58
MspI	CCGG	8 cut(s)	70, 74, 83, 132, 555, 687, 704, 739
MspR9I	CCNGG	2 cut(s)	496, 555
MvaI	CCWGG	1 cut(s)	496
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	6 cut(s)	249, 258, 261, 285, 397, 453
NaeI	GCCGGC	2 cut(s)	75, 133
NciI	CCSGG	1 cut(s)	555
NdeII	GATC	3 cut(s)	560, 615, 784
NgoMIV	GCCGGC	2 cut(s)	73, 131
NlaIII	CATG	4 cut(s)	37, 395, 748, 776
NlaIV	GGNNCC	3 cut(s)	78, 130, 617
NmeAIII	GCCGAG	1 cut(s)	297
NmuCI	GTSAC	2 cut(s)	644, 670
NspI	RCATGY	1 cut(s)	748
PagI	TCATGA	1 cut(s)	33
PciI	ACATGT	1 cut(s)	744
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 363, 420
PdiI	GCCGGC	2 cut(s)	75, 133
PfeI	GAWTC	4 cut(s)	44, 158, 270, 752
PfoI	TCCNGGA	1 cut(s)	494
PleI	GAGTC	4 cut(s)	160, 603, 667, 786
PmaCI	CACGTG	1 cut(s)	424
PmlI	CACGTG	1 cut(s)	424
PpsI	GAGTC	4 cut(s)	160, 603, 667, 786
Ppu21I	YACGTR	1 cut(s)	424
PscI	ACATGT	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	494
PspCI	CACGTG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	494
PspN4I	GGNNCC	3 cut(s)	78, 130, 617
PspPI	GGNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	491, 523
PstI	CTGCAG	1 cut(s)	293
PsuI	RGATCY	2 cut(s)	615, 784
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	3 cut(s)	428, 520, 743
RsaNI	GTAC	3 cut(s)	427, 519, 742
RseI	CAYNNNNRTG	1 cut(s)	38
SalI	GTCGAC	2 cut(s)	137, 164
Sau3AI	GATC	3 cut(s)	560, 615, 784
Sau96I	GGNCC	1 cut(s)	129
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	4 cut(s)	161, 604, 667, 787
ScrFI	CCNGG	2 cut(s)	496, 555
SetI	ASST	5 cut(s)	42, 60, 426, 488, 542
SfaNI	GCATC	2 cut(s)	126, 379
SfcI	CTRYAG	2 cut(s)	289, 508
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	3 cut(s)	122, 439, 727
SsiI	CCGC	5 cut(s)	265, 321, 349, 448, 613
SspMI	CTAG	3 cut(s)	516, 537, 633
StyD4I	CCNGG	2 cut(s)	494, 553
StyI	CCWWGG	2 cut(s)	451, 536
TaaI	ACNGT	2 cut(s)	512, 650
TaiI	ACGT	2 cut(s)	42, 426
TaqI	TCGA	5 cut(s)	120, 138, 165, 273, 755
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	122, 439, 727
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	4 cut(s)	267, 324, 352, 450
TfiI	GAWTC	4 cut(s)	44, 158, 270, 752
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	2 cut(s)	644, 670
TseI	GCWGC	7 cut(s)	58, 252, 261, 288, 352, 416, 763
Tsp45I	GTSAC	2 cut(s)	644, 670
TspDTI	ATGAA	6 cut(s)	22, 50, 452, 674, 765, 779
TspGWI	ACGGA	3 cut(s)	480, 561, 666
TspRI	CASTG	1 cut(s)	672
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	748
XmaJI	CCTAGG	1 cut(s)	536
XmiI	GTMKAC	2 cut(s)	138, 165
XspI	CTAG	3 cut(s)	516, 537, 633
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.