Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

21506572 .. 21507739

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G58070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACGAGGCTACCGGAGAAACAGAAACTCAAGATTTCATGAACGTCGAATCCTTCTCTCAGCTTCCTTTCATTCGCCGTCCTAAAGATAAGAACCCTAAACCCATTCGTGTCTTCGGAAAAGATTTCACCGGCAGAGATTTCTCTATTACTACCGGTCAAGAAGACTACACCGATCCTTACCAGACCAAAAACAAAGAAGAAGAAGAGGAAGAAGACCAAACCGGAGACAACAGTACGGACAATAATAGCATCAGCCACAACAGGAGATTCGAGTGTCACTATTGCTTTAGAAATTTTCCTACTTCACAAGCCCTAGGTGGACACCAAAACGCTCACAAACGCGAACGTCAGCTTGCCAAACGCGGTGTTTCCTCTTACTTTTATCATCCTGACAATAACCCTTACAGTTACCGTCATTACCCGTCGTGGACCAATGGTCCGTTAACCGCGGCTAGGTCCTATGGAGGATTTTCTTCTGGTCCTAAGCCGTCGGGGTATTATACACGACCCAGCTATGGGAGTCAGTTAGGACTATGGCGTCTACCGCCTCGCGTTCAAGGCGTTTATAACTCAAACGCAGCGTTTACTAGTAATGGCTCTTCTTCTTCTTCTAATTCGACTTTACCGTTGTTGACCCGTTCTCAAACTCAACTATCATCGCAAGTGGGTGGCTCCGCTGCTCAGAACAGAATGTCATCGTACGGTTACGGATTGAGCCCTAACGTGCAAGATCATGTGAGTCTCGATCTTCATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

253

Amino Acids

28.46

Weight (kDa)

7.1

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	570
AasI	GACNNNNNNGTC	1 cut(s)	540
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	4 cut(s)	345, 366, 452, 555
AciI	CCGC	5 cut(s)	366, 450, 452, 548, 678
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	295
AcyI	GRCGYC	1 cut(s)	541
AfaI	GTAC	2 cut(s)	238, 704
AfiI	CCNNNNNNNGG	3 cut(s)	456, 518, 519
AgeI	ACCGGT	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	560
AhdI	GACNNNNNGTC	1 cut(s)	438
AhlI	ACTAGT	1 cut(s)	590
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	3 cut(s)	64, 355, 516
AluI	AGCT	3 cut(s)	64, 355, 516
Alw26I	GTCTC	2 cut(s)	222, 749
AlwI	GGATC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	581, 680
ApoI	RAATTY	1 cut(s)	295
AsiGI	ACCGGT	1 cut(s)	155
AspA2I	CCTAGG	1 cut(s)	316
AspS9I	GGNCC	4 cut(s)	432, 440, 459, 482
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	4 cut(s)	432, 440, 459, 482
AvrII	CCTAGG	1 cut(s)	316
BanII	GRGCYC	1 cut(s)	722
BarI	GAAGNNNNNNTAC	2 cut(s)	586, 618
BbsI	GAAGAC	3 cut(s)	106, 171, 222
BbvI	GCAGC	2 cut(s)	593, 667
BceAI	ACGGC	2 cut(s)	63, 475
BcoDI	GTCTC	2 cut(s)	222, 749
BcuI	ACTAGT	1 cut(s)	590
BfaI	CTAG	3 cut(s)	317, 456, 591
BisI	GCNGC	3 cut(s)	453, 582, 681
BlnI	CCTAGG	1 cut(s)	316
BlsI	GCNGC	3 cut(s)	454, 583, 682
Bme18I	GGWCC	4 cut(s)	432, 440, 459, 482
BmeRI	GACNNNNNGTC	1 cut(s)	438
BmgT120I	GGNCC	4 cut(s)	432, 440, 459, 482
BmiI	GGNNCC	1 cut(s)	676
BmsI	GCATC	1 cut(s)	261
BpiI	GAAGAC	3 cut(s)	106, 171, 222
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	753
BsaHI	GRCGYC	1 cut(s)	541
BsaJI	CCNNGG	2 cut(s)	316, 450
BsaWI	WCCGGW	3 cut(s)	14, 155, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	456, 518, 519
Bse118I	RCCGGY	2 cut(s)	131, 155
Bse8I	GATNNNNATC	1 cut(s)	753
BseDI	CCNNGG	2 cut(s)	316, 450
BseGI	GGATG	1 cut(s)	388
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	3 cut(s)	456, 518, 519
BseMII	CTCAG	2 cut(s)	74, 698
BseXI	GCAGC	2 cut(s)	593, 667
BseYI	CCCAGC	1 cut(s)	512
Bsh1236I	CGCG	4 cut(s)	345, 366, 452, 555
BshTI	ACCGGT	1 cut(s)	155
BsiSI	CCGG	4 cut(s)	15, 132, 156, 225
BsiWI	CGTACG	1 cut(s)	702
BslI	CCNNNNNNNGG	3 cut(s)	456, 518, 519
BsmAI	GTCTC	2 cut(s)	222, 749
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	3 cut(s)	175, 733, 748
BspACI	CCGC	5 cut(s)	366, 450, 452, 548, 678
BspCNI	CTCAG	2 cut(s)	73, 697
BspFNI	CGCG	4 cut(s)	345, 366, 452, 555
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	676
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	607
BsrFI	RCCGGY	2 cut(s)	131, 155
BssAI	RCCGGY	2 cut(s)	131, 155
BssECI	CCNNGG	2 cut(s)	316, 450
BssMI	GATC	3 cut(s)	175, 733, 748
BssNI	GRCGYC	1 cut(s)	541
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	5 cut(s)	236, 410, 416, 630, 707
Bst6I	CTCTTC	2 cut(s)	201, 607
BstACI	GRCGYC	1 cut(s)	541
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	3 cut(s)	60, 486, 684
BstDSI	CCRYGG	1 cut(s)	450
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	4 cut(s)	345, 366, 452, 555
BstKTI	GATC	3 cut(s)	178, 736, 751
BstMAI	GTCTC	2 cut(s)	222, 749
BstMBI	GATC	3 cut(s)	175, 733, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	547, 561
BstUI	CGCG	4 cut(s)	345, 366, 452, 555
BstV1I	GCAGC	2 cut(s)	593, 667
BstV2I	GAAGAC	3 cut(s)	106, 171, 222
BtgI	CCRYGG	1 cut(s)	450
BtgZI	GCGATG	1 cut(s)	645
BtsCI	GGATG	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	357
CciI	TCATGA	1 cut(s)	39
Cfr10I	RCCGGY	2 cut(s)	131, 155
Cfr13I	GGNCC	4 cut(s)	432, 440, 459, 482
Cfr42I	CCGCGG	1 cut(s)	453
CseI	GACGC	1 cut(s)	530
Csp6I	GTAC	2 cut(s)	237, 703
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	2 cut(s)	40, 737
CviQI	GTAC	2 cut(s)	237, 703
DdeI	CTNAG	3 cut(s)	60, 486, 684
DpnI	GATC	3 cut(s)	177, 735, 750
DpnII	GATC	3 cut(s)	175, 733, 748
DrdI	GACNNNNNNGTC	1 cut(s)	540
DriI	GACNNNNNGTC	1 cut(s)	438
DseDI	GACNNNNNNGTC	1 cut(s)	540
Eam1104I	CTCTTC	2 cut(s)	201, 607
Eam1105I	GACNNNNNGTC	1 cut(s)	438
EarI	CTCTTC	2 cut(s)	201, 607
Eco130I	CCWWGG	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	722
Eco47I	GGWCC	4 cut(s)	432, 440, 459, 482
EcoO109I	RGGNCCY	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	722
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	2 cut(s)	43, 740
FaiI	YATR	7 cut(s)	41, 465, 504, 519, 538, 570, 738
FatI	CATG	2 cut(s)	39, 736
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	3 cut(s)	453, 582, 681
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	722
Fsp4HI	GCNGC	3 cut(s)	453, 582, 681
FspBI	CTAG	3 cut(s)	317, 456, 591
GluI	GCNGC	3 cut(s)	453, 582, 681
GsaI	CCCAGC	1 cut(s)	516
HapII	CCGG	4 cut(s)	15, 132, 156, 225
HgaI	GACGC	1 cut(s)	530
Hin1I	GRCGYC	1 cut(s)	541
Hin1II	CATG	2 cut(s)	43, 740
HincII	GTYRAC	2 cut(s)	447, 636
HindII	GTYRAC	2 cut(s)	447, 636
HinfI	GANTC	4 cut(s)	50, 270, 523, 742
HpaI	GTTAAC	1 cut(s)	447
HpaII	CCGG	4 cut(s)	15, 132, 156, 225
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	6 cut(s)	323, 432, 447, 545, 588, 636
Hpy188I	TCNGA	2 cut(s)	119, 687
Hpy188III	TCNNGA	5 cut(s)	32, 40, 161, 392, 746
Hpy8I	GTNNAC	6 cut(s)	323, 432, 447, 545, 588, 636
Hpy99I	CGWCG	3 cut(s)	50, 430, 496
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	5 cut(s)	236, 410, 416, 630, 707
HpyCH4IV	ACGT	3 cut(s)	45, 349, 726
HpyCH4V	TGCA	1 cut(s)	730
HpyF10VI	GCNNNNNNNGC	2 cut(s)	547, 561
HpyF3I	CTNAG	3 cut(s)	60, 486, 684
HpySE526I	ACGT	3 cut(s)	45, 349, 726
Hsp92I	GRCGYC	1 cut(s)	541
Hsp92II	CATG	2 cut(s)	43, 740
KspAI	GTTAAC	1 cut(s)	447
KspI	CCGCGG	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	175, 733, 748
LguI	GCTCTTC	1 cut(s)	607
LmnI	GCTCC	1 cut(s)	680
LpnPI	CCDG	9 cut(s)	28, 145, 169, 197, 238, 250, 405, 465, 526
Lsp1109I	GCAGC	2 cut(s)	593, 667
LweI	GCATC	1 cut(s)	261
MaeI	CTAG	3 cut(s)	317, 456, 591
MaeII	ACGT	3 cut(s)	45, 349, 726
MaeIII	GTNAC	3 cut(s)	278, 410, 707
MalI	GATC	3 cut(s)	177, 735, 750
MboI	GATC	3 cut(s)	175, 733, 748
MhlI	GDGCHC	1 cut(s)	722
MluCI	AATT	2 cut(s)	295, 616
MlyI	GAGTC	2 cut(s)	532, 751
MnlI	CCTC	4 cut(s)	202, 385, 461, 561
MseI	TTAA	2 cut(s)	446, 760
MspA1I	CMGCKG	2 cut(s)	452, 680
MspI	CCGG	4 cut(s)	15, 132, 156, 225
MvnI	CGCG	4 cut(s)	345, 366, 452, 555
MwoI	GCNNNNNNNGC	2 cut(s)	547, 561
NdeII	GATC	3 cut(s)	175, 733, 748
NlaIII	CATG	2 cut(s)	43, 740
NlaIV	GGNNCC	1 cut(s)	676
NmuCI	GTSAC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	607
PcsI	WCGNNNNNNNCGW	1 cut(s)	626
PfeI	GAWTC	2 cut(s)	50, 270
Pfl23II	CGTACG	1 cut(s)	702
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	454, 583, 682
PleI	GAGTC	2 cut(s)	531, 750
PpsI	GAGTC	2 cut(s)	531, 750
PpuMI	RGGWCCY	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	570
Psp5II	RGGWCCY	1 cut(s)	459
PspFI	CCCAGC	1 cut(s)	512
PspLI	CGTACG	1 cut(s)	702
PspN4I	GGNNCC	1 cut(s)	676
PspPI	GGNCC	4 cut(s)	432, 440, 459, 482
PspPPI	RGGWCCY	1 cut(s)	459
RsaI	GTAC	2 cut(s)	238, 704
RsaNI	GTAC	2 cut(s)	237, 703
SacII	CCGCGG	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	607
SaqAI	TTAA	2 cut(s)	446, 760
SatI	GCNGC	3 cut(s)	453, 582, 681
Sau3AI	GATC	3 cut(s)	175, 733, 748
Sau96I	GGNCC	4 cut(s)	432, 440, 459, 482
SchI	GAGTC	2 cut(s)	532, 751
SduI	GDGCHC	1 cut(s)	722
SetI	ASST	8 cut(s)	48, 66, 322, 352, 357, 461, 518, 729
SfaNI	GCATC	1 cut(s)	261
Sfr303I	CCGCGG	1 cut(s)	453
SgrBI	CCGCGG	1 cut(s)	453
SinI	GGWCC	4 cut(s)	432, 440, 459, 482
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
SpeI	ACTAGT	1 cut(s)	590
Sse9I	AATT	2 cut(s)	295, 616
SsiI	CCGC	5 cut(s)	366, 450, 452, 548, 678
SspMI	CTAG	3 cut(s)	317, 456, 591
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	5 cut(s)	236, 410, 416, 630, 707
TaiI	ACGT	3 cut(s)	48, 352, 729
TaqI	TCGA	4 cut(s)	48, 273, 620, 747
TasI	AATT	2 cut(s)	295, 616
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	50, 270
Tru1I	TTAA	2 cut(s)	446, 760
Tru9I	TTAA	2 cut(s)	446, 760
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	581, 680
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	4 cut(s)	28, 56, 61, 743
TspGWI	ACGGA	3 cut(s)	254, 432, 726
VpaK11BI	GGWCC	4 cut(s)	432, 440, 459, 482
XapI	RAATTY	1 cut(s)	295
XmaJI	CCTAGG	1 cut(s)	316
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	3 cut(s)	317, 456, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.