Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

6050995 .. 6051813

Gene Structure 819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1054000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGACAAGGTTGAGAGAGAGACTCAGGACTTCATGAACGTAGAGTCATTCTCTCAGCTACCCTTCATCCGCCCAGCCCCTCCACTCAACAAAGAAAAGGGCATTCGGCTCTTCGGCATAGAATTTGGGACCGACACCGCCACTGACGACTCTGAGTCCCTTGATTACACCAATGCGTCGGAAGACACAAAAAGGAACAACATCAACAACAACACCACCGCCAACAACAACAACAAAAATAATAACAACGAAAACGGAAGTGAGAGCAGCCGGAGATTCGAATGCCATTACTGCTGCCGAAACTTCCCAACCTCCCAAGCCCTTGGGGGACACCAGAACGCGCACAAGAGAGAGCGCCAGCACGCGAAACGCGAGCACCTCCAGTCGGCCATGGTGCATGCCGGAGGCCTATCTCATGACGCACACCACGTGTACGGCTTGCTGAACTACACAAGACTTGGCTCCTCAGCTCTTCATCATCCATCATGGAATATTACTAACTCTAGCTCTAGTATAACTAGTGCTCATCATCATCAGCAGCATCCTCATGCTAGGTTTTATGGAAGCTCTGGTAGTACGTATGGCACACAATCTGCTCCAATAAATGGGAGCCCCTTGGCCTTGTGGCGGATCCCAGCCGTTCAAGGTGCTAACCCTAGTTTCAATCGTGACCGTTCAATGAATTTGGTCTCCGGCGGGGAGGAAATGATGGTGTCCGGGTTCGGTAGTGGGTCGTCCGGTGGTCATCAAGGGCGGTACCTGTATGACTCGTCGATGGCTAGCGTGCAAGATCATGTGAGTTTGGACCTTCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

273

Amino Acids

30.05

Weight (kDa)

6.67

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	756
AccB1I	GGYRCC	1 cut(s)	756
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccII	CGCG	3 cut(s)	341, 365, 372
AciI	CCGC	6 cut(s)	70, 138, 219, 628, 696, 754
AclWI	GGATC	2 cut(s)	625, 638
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	122, 682
AcvI	CACGTG	1 cut(s)	430
AdeI	CACNNNGTG	1 cut(s)	430
AfaI	GTAC	3 cut(s)	434, 577, 758
AfiI	CCNNNNNNNGG	3 cut(s)	385, 605, 627
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	3 cut(s)	644, 664, 678
AhdI	GACNNNNNGTC	1 cut(s)	154
AhlI	ACTAGT	1 cut(s)	518
AluBI	AGCT	4 cut(s)	58, 470, 507, 567
AluI	AGCT	4 cut(s)	58, 470, 507, 567
Alw21I	GWGCWC	2 cut(s)	378, 526
Alw26I	GTCTC	2 cut(s)	14, 694
AlwI	GGATC	2 cut(s)	625, 638
AoxI	GGCC	3 cut(s)	387, 406, 618
ApeKI	GCWGC	3 cut(s)	267, 294, 538
ApoI	RAATTY	2 cut(s)	122, 682
Asp718I	GGTACC	1 cut(s)	756
AspLEI	GCGC	2 cut(s)	343, 357
AspS9I	GGNCC	2 cut(s)	129, 805
AsuC2I	CCSGG	1 cut(s)	718
AsuII	TTCGAA	1 cut(s)	279
AsuNHI	GCTAGC	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	129, 805
BamHI	GGATCC	1 cut(s)	630
BanI	GGYRCC	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	614
BbrPI	CACGTG	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	189
Bbv12I	GWGCWC	2 cut(s)	378, 526
BbvCI	CCTCAGC	1 cut(s)	466
BbvI	GCAGC	3 cut(s)	279, 281, 550
BccI	CCATC	3 cut(s)	490, 703, 769
BceAI	ACGGC	2 cut(s)	451, 623
BcnI	CCSGG	1 cut(s)	718
BcoDI	GTCTC	2 cut(s)	14, 694
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	6 cut(s)	504, 510, 519, 552, 657, 780
BfoI	RGCGCY	1 cut(s)	358
BisI	GCNGC	3 cut(s)	268, 295, 539
BlsI	GCNGC	3 cut(s)	269, 296, 540
Bme1390I	CCNGG	1 cut(s)	718
Bme18I	GGWCC	2 cut(s)	129, 805
BmeRI	GACNNNNNGTC	1 cut(s)	154
BmgT120I	GGNCC	2 cut(s)	129, 805
BmiI	GGNNCC	5 cut(s)	130, 463, 611, 632, 758
BmrFI	CCNGG	1 cut(s)	718
BmsI	GCATC	1 cut(s)	550
BmtI	GCTAGC	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	189
BplI	GAGNNNNNCTC	4 cut(s)	7, 39, 35, 67
BpmI	CTGGAG	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	466
Bpu14I	TTCGAA	1 cut(s)	279
BpuMI	CCSGG	1 cut(s)	718
BsaAI	YACGTR	2 cut(s)	430, 579
BsaI	GGTCTC	1 cut(s)	694
BsaJI	CCNNGG	3 cut(s)	322, 390, 615
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 605, 627
Bse1I	ACTGG	1 cut(s)	382
BseDI	CCNNGG	3 cut(s)	322, 390, 615
BseGI	GGATG	3 cut(s)	66, 478, 541
BseLI	CCNNNNNNNGG	3 cut(s)	385, 605, 627
BseMII	CTCAG	4 cut(s)	38, 68, 144, 480
BseNI	ACTGG	1 cut(s)	382
BseRI	GAGGAG	1 cut(s)	454
BseXI	GCAGC	3 cut(s)	279, 281, 550
BseYI	CCCAGC	2 cut(s)	73, 634
Bsh1236I	CGCG	3 cut(s)	341, 365, 372
BshFI	GGCC	3 cut(s)	389, 408, 620
BshNI	GGYRCC	1 cut(s)	756
BsiHKAI	GWGCWC	2 cut(s)	378, 526
BsiSI	CCGG	5 cut(s)	271, 402, 693, 717, 738
BslFI	GGGAC	3 cut(s)	142, 142, 342
BslI	CCNNNNNNNGG	3 cut(s)	385, 605, 627
BsmAI	GTCTC	2 cut(s)	14, 694
BsmFI	GGGAC	3 cut(s)	142, 142, 342
BsmI	GAATGC	2 cut(s)	102, 287
BsnI	GGCC	3 cut(s)	389, 408, 620
Bso31I	GGTCTC	1 cut(s)	694
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	378, 526, 614
Bsp143I	GATC	2 cut(s)	630, 790
Bsp19I	CCATGG	1 cut(s)	390
BspACI	CCGC	6 cut(s)	70, 138, 219, 628, 696, 754
BspANI	GGCC	3 cut(s)	389, 408, 620
BspCNI	CTCAG	4 cut(s)	37, 67, 145, 479
BspFNI	CGCG	3 cut(s)	341, 365, 372
BspHI	TCATGA	2 cut(s)	33, 415
BspLI	GGNNCC	5 cut(s)	130, 463, 611, 632, 758
BspOI	GCTAGC	1 cut(s)	783
BspPI	GGATC	2 cut(s)	625, 638
BspQI	GCTCTTC	2 cut(s)	116, 477
BspT104I	TTCGAA	1 cut(s)	279
BspT107I	GGYRCC	1 cut(s)	756
BspTNI	GGTCTC	1 cut(s)	694
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	3 cut(s)	322, 390, 615
BssMI	GATC	2 cut(s)	630, 790
BssT1I	CCWWGG	3 cut(s)	322, 390, 615
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	2 cut(s)	116, 477
BstBAI	YACGTR	2 cut(s)	430, 579
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	7 cut(s)	359, 363, 374, 399, 440, 781, 785
BstDEI	CTNAG	4 cut(s)	24, 54, 153, 466
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	66, 478, 541
BstFNI	CGCG	3 cut(s)	341, 365, 372
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	343, 357
BstKTI	GATC	2 cut(s)	633, 793
BstMAI	GTCTC	2 cut(s)	14, 694
BstMBI	GATC	2 cut(s)	630, 790
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	716
BstSNI	TACGTA	1 cut(s)	579
BstUI	CGCG	3 cut(s)	341, 365, 372
BstV1I	GCAGC	3 cut(s)	279, 281, 550
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	630
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	389, 408, 620
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	66, 478, 541
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	7 cut(s)	359, 363, 374, 399, 440, 781, 785
CciI	TCATGA	2 cut(s)	33, 415
CfoI	GCGC	2 cut(s)	343, 357
Cfr13I	GGNCC	2 cut(s)	129, 805
CseI	GACGC	2 cut(s)	165, 428
Csp6I	GTAC	3 cut(s)	433, 576, 757
CviAII	CATG	7 cut(s)	34, 391, 398, 416, 486, 548, 794
CviQI	GTAC	3 cut(s)	433, 576, 757
DdeI	CTNAG	4 cut(s)	24, 54, 153, 466
DpnI	GATC	2 cut(s)	632, 792
DpnII	GATC	2 cut(s)	630, 790
DraIII	CACNNNGTG	1 cut(s)	430
DriI	GACNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	1 cut(s)	387
Eam1104I	CTCTTC	2 cut(s)	116, 477
Eam1105I	GACNNNNNGTC	1 cut(s)	154
EarI	CTCTTC	2 cut(s)	116, 477
EciI	GGCGGA	2 cut(s)	59, 643
Eco105I	TACGTA	1 cut(s)	579
Eco130I	CCWWGG	3 cut(s)	322, 390, 615
Eco147I	AGGCCT	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	614
Eco31I	GGTCTC	1 cut(s)	694
Eco47I	GGWCC	2 cut(s)	129, 805
Eco72I	CACGTG	1 cut(s)	430
EcoT14I	CCWWGG	3 cut(s)	322, 390, 615
EcoT38I	GRGCYC	1 cut(s)	614
ErhI	CCWWGG	3 cut(s)	322, 390, 615
FaeI	CATG	7 cut(s)	37, 394, 401, 419, 489, 551, 797
FaqI	GGGAC	3 cut(s)	142, 142, 342
FatI	CATG	7 cut(s)	33, 390, 397, 415, 485, 547, 793
FauI	CCCGC	1 cut(s)	689
Fnu4HI	GCNGC	3 cut(s)	268, 295, 539
FokI	GGATG	3 cut(s)	53, 465, 528
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	3 cut(s)	268, 295, 539
FspBI	CTAG	6 cut(s)	504, 510, 519, 552, 657, 780
GlaI	GCGC	2 cut(s)	342, 356
GluI	GCNGC	3 cut(s)	268, 295, 539
GsaI	CCCAGC	2 cut(s)	77, 638
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	358
HaeIII	GGCC	3 cut(s)	389, 408, 620
HapII	CCGG	5 cut(s)	271, 402, 693, 717, 738
HgaI	GACGC	2 cut(s)	165, 428
HhaI	GCGC	2 cut(s)	343, 357
Hin1II	CATG	7 cut(s)	37, 394, 401, 419, 489, 551, 797
Hin6I	GCGC	2 cut(s)	341, 355
HinP1I	GCGC	2 cut(s)	341, 355
HinfI	GANTC	6 cut(s)	22, 44, 149, 155, 276, 767
HpaII	CCGG	5 cut(s)	271, 402, 693, 717, 738
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	154, 181
Hpy188III	TCNNGA	4 cut(s)	26, 34, 416, 668
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	2 cut(s)	181, 775
HpyAV	CCTTC	2 cut(s)	73, 818
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	3 cut(s)	39, 429, 578
HpyCH4V	TGCA	2 cut(s)	397, 787
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	4 cut(s)	24, 54, 153, 466
HpySE526I	ACGT	3 cut(s)	39, 429, 578
Hsp92II	CATG	7 cut(s)	37, 394, 401, 419, 489, 551, 797
HspAI	GCGC	2 cut(s)	341, 355
KpnI	GGTACC	1 cut(s)	760
Kzo9I	GATC	2 cut(s)	630, 790
LguI	GCTCTTC	2 cut(s)	116, 477
LmnI	GCTCC	3 cut(s)	467, 601, 609
Lsp1109I	GCAGC	3 cut(s)	279, 281, 550
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	6 cut(s)	504, 510, 519, 552, 657, 780
MaeII	ACGT	3 cut(s)	39, 429, 578
MaeIII	GTNAC	1 cut(s)	668
MalI	GATC	2 cut(s)	632, 792
MboI	GATC	2 cut(s)	630, 790
MboII	GAAGA	3 cut(s)	103, 194, 464
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	3 cut(s)	378, 526, 614
MluCI	AATT	2 cut(s)	122, 682
MlyI	GAGTC	5 cut(s)	16, 53, 143, 164, 761
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	90, 322, 389, 398, 475, 555, 694
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	5 cut(s)	271, 402, 693, 717, 738
MspR9I	CCNGG	1 cut(s)	718
Mva1269I	GAATGC	2 cut(s)	102, 287
MvnI	CGCG	3 cut(s)	341, 365, 372
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	718
NcoI	CCATGG	1 cut(s)	390
NdeII	GATC	2 cut(s)	630, 790
NheI	GCTAGC	1 cut(s)	779
NlaIII	CATG	7 cut(s)	37, 394, 401, 419, 489, 551, 797
NlaIV	GGNNCC	5 cut(s)	130, 463, 611, 632, 758
NmuCI	GTSAC	1 cut(s)	668
NspI	RCATGY	1 cut(s)	401
NspV	TTCGAA	1 cut(s)	279
PaeI	GCATGC	1 cut(s)	401
PagI	TCATGA	2 cut(s)	33, 415
PceI	AGGCCT	1 cut(s)	408
PciSI	GCTCTTC	2 cut(s)	116, 477
PcsI	WCGNNNNNNNCGW	2 cut(s)	369, 426
PctI	GAATGC	2 cut(s)	102, 287
PfeI	GAWTC	1 cut(s)	276
PflMI	CCANNNNNTGG	1 cut(s)	605
PkrI	GCNGC	3 cut(s)	269, 296, 540
PleI	GAGTC	5 cut(s)	16, 52, 143, 163, 761
PmaCI	CACGTG	1 cut(s)	430
PmlI	CACGTG	1 cut(s)	430
PpsI	GAGTC	5 cut(s)	16, 52, 143, 163, 761
Ppu21I	YACGTR	2 cut(s)	430, 579
PspCI	CACGTG	1 cut(s)	430
PspFI	CCCAGC	2 cut(s)	73, 634
PspN4I	GGNNCC	5 cut(s)	130, 463, 611, 632, 758
PspPI	GGNCC	2 cut(s)	129, 805
PsuI	RGATCY	1 cut(s)	630
RsaI	GTAC	3 cut(s)	434, 577, 758
RsaNI	GTAC	3 cut(s)	433, 576, 757
RseI	CAYNNNNRTG	1 cut(s)	546
SapI	GCTCTTC	2 cut(s)	116, 477
SatI	GCNGC	3 cut(s)	268, 295, 539
Sau3AI	GATC	2 cut(s)	630, 790
Sau96I	GGNCC	2 cut(s)	129, 805
SchI	GAGTC	5 cut(s)	16, 53, 143, 164, 761
ScrFI	CCNGG	1 cut(s)	718
SduI	GDGCHC	3 cut(s)	378, 526, 614
SfaNI	GCATC	1 cut(s)	550
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	2 cut(s)	129, 805
SmiMI	CAYNNNNRTG	1 cut(s)	546
SnaBI	TACGTA	1 cut(s)	579
SpeI	ACTAGT	1 cut(s)	518
SphI	GCATGC	1 cut(s)	401
Sse9I	AATT	2 cut(s)	122, 682
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	6 cut(s)	70, 138, 219, 628, 696, 754
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	6 cut(s)	504, 510, 519, 552, 657, 780
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	716
StyI	CCWWGG	3 cut(s)	322, 390, 615
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	3 cut(s)	42, 432, 581
TaqI	TCGA	2 cut(s)	279, 773
TaqII	GACCGA	1 cut(s)	146
TasI	AATT	2 cut(s)	122, 682
TfiI	GAWTC	1 cut(s)	276
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	3 cut(s)	267, 294, 538
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	6 cut(s)	22, 50, 55, 464, 695, 800
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	129, 805
XapI	RAATTY	2 cut(s)	122, 682
XceI	RCATGY	1 cut(s)	401
XspI	CTAG	6 cut(s)	504, 510, 519, 552, 657, 780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.