Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Reverse (-)

15282787 .. 15283581

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g21760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGAGAAGATTGAGAGGGAAACCCAAGACTTCATGAACGTTGAATCCTTCTCTCAGCTGCCCTTCATCCGCCCGGCTCCTCCAGTCAACAAAGAAAAGGGCATTAGGCTCTTCGGCATCGAATTCGGGGCAGGCGTCGACCCCAACCACGACTCGGAATCGGTCGACAACAATGTGTCTGAGAACGGGAAAGAAGAAGAGGGCAACAAGAACACCAACACCACCACAAATATAAGCAAGAGCAACAGCGAAAATGGCAGCGAGAGCAGCCGGAGATTCGAGTGCCATTACTGCTGCAGAAACTTCCCGACTAGCCAAGCCCTCGGCGGCCACCAAAACGCACACAAAAGAGAGCGGCAGCACGCCAAACGCGAGCATCTCCAGTCAGCTATGGTGCATGGAGGGCTCGTCTCCCACGACGCTGCACAAGTGTACGGCTTGATGAATTACAGCCGCCTTGGCTCTGCTCATCATCCCACATATCCGGCCTGGAACACTAACTACAGTTCTAGTACCACTACCACCAGTCCTAGGTTCTACGGAATCCCCGGTGGATCTTACGGTACTCAAACCGCGCCCATAAACGGCAGCCCTTTGGGCTTGTGGCGGATCCCATCTGCTAACCCTAGTTTCAATCGTGACCGCTCGTTGATGAACCCGCTGGTGACGCCGTTGTTCGCCGGAGAAGAACTGAAGCCGGTTGTCATAGGAGGGTCTGGTAATTCCCAAAGCCGGTACGTGTATGAATCGAGTAGTGTGCAGCAAGACCATGTGAGTCTGGATCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

265

Amino Acids

29.14

Weight (kDa)

6.45

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	355, 645
AccI	GTMKAC	2 cut(s)	138, 165
AccII	CGCG	2 cut(s)	372, 575
AciI	CCGC	8 cut(s)	70, 327, 355, 454, 573, 607, 643, 659
AclI	AACGTT	1 cut(s)	39
AclWI	GGATC	4 cut(s)	562, 604, 617, 789
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	122
AcuI	CTGAAG	1 cut(s)	713
AcyI	GRCGYC	2 cut(s)	135, 668
AfaI	GTAC	4 cut(s)	434, 514, 565, 737
AfiI	CCNNNNNNNGG	4 cut(s)	154, 531, 584, 732
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	44, 634
AjnI	CCWGG	1 cut(s)	488
AloI	GAACNNNNNNTCC	2 cut(s)	29, 61
AluBI	AGCT	2 cut(s)	58, 389
AluI	AGCT	2 cut(s)	58, 389
Alw26I	GTCTC	1 cut(s)	415
AlwI	GGATC	4 cut(s)	562, 604, 617, 789
AoxI	GGCC	2 cut(s)	328, 486
ApeKI	GCWGC	8 cut(s)	58, 258, 267, 294, 358, 422, 588, 760
ApoI	RAATTY	1 cut(s)	122
AspA2I	CCTAGG	1 cut(s)	530
AspLEI	GCGC	1 cut(s)	577
AsuC2I	CCSGG	2 cut(s)	74, 549
AsuHPI	GGTGA	1 cut(s)	676
AvrII	CCTAGG	1 cut(s)	530
BamHI	GGATCC	1 cut(s)	609
BanII	GRGCYC	1 cut(s)	408
BbvI	GCAGC	8 cut(s)	45, 270, 279, 281, 370, 409, 600, 772
BccI	CCATC	1 cut(s)	622
BceAI	ACGGC	3 cut(s)	451, 601, 655
BcgI	CGANNNNNNTGC	4 cut(s)	106, 140, 739, 773
BciT130I	CCWGG	1 cut(s)	490
BcnI	CCSGG	2 cut(s)	74, 549
BcoDI	GTCTC	1 cut(s)	415
BfaI	CTAG	4 cut(s)	312, 510, 531, 627
BfmI	CTRYAG	2 cut(s)	295, 502
BglI	GCCNNNNNGGC	2 cut(s)	459, 597
BlnI	CCTAGG	1 cut(s)	530
Bme1390I	CCNGG	3 cut(s)	74, 490, 549
BmiI	GGNNCC	2 cut(s)	78, 611
BmrFI	CCNGG	3 cut(s)	74, 490, 549
BmsI	GCATC	2 cut(s)	126, 385
BpmI	CTGGAG	2 cut(s)	66, 365
BpuMI	CCSGG	2 cut(s)	74, 549
BsaAI	YACGTR	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	135, 668
BsaJI	CCNNGG	4 cut(s)	322, 457, 530, 547
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 531, 584, 732
Bse118I	RCCGGY	2 cut(s)	697, 732
Bse1I	ACTGG	3 cut(s)	83, 382, 525
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	1 cut(s)	490
BseDI	CCNNGG	4 cut(s)	322, 457, 530, 547
BseGI	GGATG	2 cut(s)	66, 472
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	4 cut(s)	154, 531, 584, 732
BseMII	CTCAG	2 cut(s)	68, 171
BseNI	ACTGG	3 cut(s)	83, 382, 525
BseRI	GAGGAG	1 cut(s)	69
BseXI	GCAGC	8 cut(s)	45, 270, 279, 281, 370, 409, 600, 772
BsgI	GTGCAG	2 cut(s)	408, 779
Bsh1236I	CGCG	2 cut(s)	372, 575
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	2 cut(s)	330, 488
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	7 cut(s)	74, 271, 485, 549, 681, 698, 733
BslI	CCNNNNNNNGG	4 cut(s)	154, 531, 584, 732
BsmAI	GTCTC	1 cut(s)	415
BsmBI	CGTCTC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	330, 488
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	554, 609, 781
BspACI	CCGC	8 cut(s)	70, 327, 355, 454, 573, 607, 643, 659
BspANI	GGCC	2 cut(s)	330, 488
BspCNI	CTCAG	2 cut(s)	67, 172
BspFNI	CGCG	2 cut(s)	372, 575
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	78, 611
BspMAI	CTGCAG	1 cut(s)	299
BspPI	GGATC	4 cut(s)	562, 604, 617, 789
BspQI	GCTCTTC	1 cut(s)	116
BsrBI	CCGCTC	2 cut(s)	355, 645
BsrFI	RCCGGY	2 cut(s)	697, 732
BsrI	ACTGG	3 cut(s)	83, 382, 525
BssAI	RCCGGY	2 cut(s)	697, 732
BssECI	CCNNGG	4 cut(s)	322, 457, 530, 547
BssMI	GATC	3 cut(s)	554, 609, 781
BssNI	GRCGYC	2 cut(s)	135, 668
BssT1I	CCWWGG	2 cut(s)	457, 530
Bst2UI	CCWGG	1 cut(s)	490
Bst4CI	ACNGT	2 cut(s)	506, 563
Bst6I	CTCTTC	2 cut(s)	116, 192
BstACI	GRCGYC	2 cut(s)	135, 668
BstBAI	YACGTR	1 cut(s)	739
BstC8I	GCNNGC	3 cut(s)	133, 363, 374
BstDEI	CTNAG	2 cut(s)	54, 180
BstF5I	GGATG	2 cut(s)	66, 472
BstFNI	CGCG	2 cut(s)	372, 575
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	3 cut(s)	557, 612, 784
BstMAI	GTCTC	1 cut(s)	415
BstMBI	GATC	3 cut(s)	554, 609, 781
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	8 cut(s)	255, 264, 267, 291, 403, 459, 597, 667
BstNI	CCWGG	1 cut(s)	490
BstSCI	CCNGG	3 cut(s)	72, 488, 547
BstSFI	CTRYAG	2 cut(s)	295, 502
BstUI	CGCG	2 cut(s)	372, 575
BstV1I	GCAGC	8 cut(s)	45, 270, 279, 281, 370, 409, 600, 772
BstX2I	RGATCY	3 cut(s)	554, 609, 781
BstYI	RGATCY	3 cut(s)	554, 609, 781
BsuRI	GGCC	2 cut(s)	330, 488
BtsCI	GGATG	2 cut(s)	66, 472
Cac8I	GCNNGC	3 cut(s)	133, 363, 374
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	2 cut(s)	697, 732
CseI	GACGC	3 cut(s)	124, 428, 676
Csp6I	GTAC	4 cut(s)	433, 513, 564, 736
CviAII	CATG	3 cut(s)	34, 398, 770
CviQI	GTAC	4 cut(s)	433, 513, 564, 736
DdeI	CTNAG	2 cut(s)	54, 180
DpnI	GATC	3 cut(s)	556, 611, 783
DpnII	GATC	3 cut(s)	554, 609, 781
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	116, 192
EarI	CTCTTC	2 cut(s)	116, 192
EciI	GGCGGA	2 cut(s)	59, 622
Eco130I	CCWWGG	2 cut(s)	457, 530
Eco24I	GRGCYC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	713
EcoRI	GAATTC	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	457, 530
EcoT38I	GRGCYC	1 cut(s)	408
ErhI	CCWWGG	2 cut(s)	457, 530
Esp3I	CGTCTC	1 cut(s)	415
FaeI	CATG	3 cut(s)	37, 401, 773
FaiI	YATR	9 cut(s)	35, 233, 392, 399, 481, 581, 707, 744, 771
FatI	CATG	3 cut(s)	33, 397, 769
FauI	CCCGC	1 cut(s)	666
FblI	GTMKAC	2 cut(s)	138, 165
FokI	GGATG	2 cut(s)	53, 459
FriOI	GRGCYC	1 cut(s)	408
FspBI	CTAG	4 cut(s)	312, 510, 531, 627
GlaI	GCGC	1 cut(s)	576
GsuI	CTGGAG	2 cut(s)	66, 365
HaeIII	GGCC	2 cut(s)	330, 488
HapII	CCGG	7 cut(s)	74, 271, 485, 549, 681, 698, 733
HgaI	GACGC	3 cut(s)	124, 428, 676
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	2 cut(s)	135, 668
Hin1II	CATG	3 cut(s)	37, 401, 773
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	3 cut(s)	88, 139, 166
HindII	GTYRAC	3 cut(s)	88, 139, 166
HinfI	GANTC	7 cut(s)	44, 152, 158, 276, 543, 746, 775
HpaII	CCGG	7 cut(s)	74, 271, 485, 549, 681, 698, 733
HphI	GGTGA	1 cut(s)	676
Hpy166II	GTNNAC	4 cut(s)	88, 139, 166, 433
Hpy188I	TCNGA	2 cut(s)	157, 181
Hpy188III	TCNNGA	4 cut(s)	34, 307, 638, 779
Hpy8I	GTNNAC	4 cut(s)	88, 139, 166, 433
Hpy99I	CGWCG	2 cut(s)	140, 422
HpyAV	CCTTC	2 cut(s)	58, 73
HpyCH4III	ACNGT	2 cut(s)	506, 563
HpyCH4IV	ACGT	2 cut(s)	39, 738
HpyCH4V	TGCA	4 cut(s)	297, 397, 425, 760
HpyF10VI	GCNNNNNNNGC	8 cut(s)	255, 264, 267, 291, 403, 459, 597, 667
HpyF3I	CTNAG	2 cut(s)	54, 180
HpySE526I	ACGT	2 cut(s)	39, 738
Hsp92I	GRCGYC	2 cut(s)	135, 668
Hsp92II	CATG	3 cut(s)	37, 401, 773
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	3 cut(s)	554, 609, 781
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	8 cut(s)	45, 270, 279, 281, 370, 409, 600, 772
LweI	GCATC	2 cut(s)	126, 385
MaeI	CTAG	4 cut(s)	312, 510, 531, 627
MaeII	ACGT	2 cut(s)	39, 738
MaeIII	GTNAC	2 cut(s)	638, 664
MalI	GATC	3 cut(s)	556, 611, 783
MbiI	CCGCTC	2 cut(s)	355, 645
MboI	GATC	3 cut(s)	554, 609, 781
MboII	GAAGA	6 cut(s)	19, 103, 206, 209, 698, 776
MflI	RGATCY	3 cut(s)	554, 609, 781
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	3 cut(s)	122, 445, 721
MlyI	GAGTC	2 cut(s)	146, 784
MnlI	CCTC	6 cut(s)	9, 90, 193, 332, 395, 704
MspA1I	CMGCKG	2 cut(s)	58, 661
MspI	CCGG	7 cut(s)	74, 271, 485, 549, 681, 698, 733
MspR9I	CCNGG	3 cut(s)	74, 490, 549
MvaI	CCWGG	1 cut(s)	490
MvnI	CGCG	2 cut(s)	372, 575
MwoI	GCNNNNNNNGC	8 cut(s)	255, 264, 267, 291, 403, 459, 597, 667
NciI	CCSGG	2 cut(s)	74, 549
NdeII	GATC	3 cut(s)	554, 609, 781
NlaIII	CATG	3 cut(s)	37, 401, 773
NlaIV	GGNNCC	2 cut(s)	78, 611
NmeAIII	GCCGAG	1 cut(s)	303
NmuCI	GTSAC	2 cut(s)	638, 664
PagI	TCATGA	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 369, 414
PfeI	GAWTC	5 cut(s)	44, 158, 276, 543, 746
PleI	GAGTC	2 cut(s)	146, 783
PpsI	GAGTC	2 cut(s)	146, 783
Ppu21I	YACGTR	1 cut(s)	739
Psp1406I	AACGTT	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	488
PspN4I	GGNNCC	2 cut(s)	78, 611
PsrI	GAACNNNNNNTAC	2 cut(s)	485, 517
PstI	CTGCAG	1 cut(s)	299
PsuI	RGATCY	3 cut(s)	554, 609, 781
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	4 cut(s)	434, 514, 565, 737
RsaNI	GTAC	4 cut(s)	433, 513, 564, 736
SalI	GTCGAC	2 cut(s)	137, 164
SapI	GCTCTTC	1 cut(s)	116
Sau3AI	GATC	3 cut(s)	554, 609, 781
SchI	GAGTC	2 cut(s)	146, 784
ScrFI	CCNGG	3 cut(s)	74, 490, 549
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	5 cut(s)	42, 60, 391, 536, 741
SfaNI	GCATC	2 cut(s)	126, 385
SfcI	CTRYAG	2 cut(s)	295, 502
Sse9I	AATT	3 cut(s)	122, 445, 721
SsiI	CCGC	8 cut(s)	70, 327, 355, 454, 573, 607, 643, 659
SspMI	CTAG	4 cut(s)	312, 510, 531, 627
StyD4I	CCNGG	3 cut(s)	72, 488, 547
StyI	CCWWGG	2 cut(s)	457, 530
TaaI	ACNGT	2 cut(s)	506, 563
TaiI	ACGT	2 cut(s)	42, 741
TaqI	TCGA	5 cut(s)	120, 138, 165, 279, 749
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	122, 445, 721
TauI	GCSGC	3 cut(s)	330, 358, 456
TfiI	GAWTC	5 cut(s)	44, 158, 276, 543, 746
TseFI	GTSAC	2 cut(s)	638, 664
TseI	GCWGC	8 cut(s)	58, 258, 267, 294, 358, 422, 588, 760
Tsp45I	GTSAC	2 cut(s)	638, 664
TspDTI	ATGAA	7 cut(s)	22, 50, 55, 458, 668, 759, 776
TspGWI	ACGGA	1 cut(s)	555
XapI	RAATTY	1 cut(s)	122
XmaJI	CCTAGG	1 cut(s)	530
XmiI	GTMKAC	2 cut(s)	138, 165
XspI	CTAG	4 cut(s)	312, 510, 531, 627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.