Zinc finger protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G41940 AT3G58070 AT5G06650 |
| fragaria_vesca | FvH4_6g21760 |
| malus_domestica | MD12G1054000.v1.1 MD14G1052700.v1.1 |
| prunus_persica | Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1 |
| pyrus_communis | pycom12g04700 pycom14g04390 |
| rosa_chinensis | RchiOBHm_Chr3g0479101 |
| rosa_laevigata | RLG00000023607 |
| rosa_multiflora | Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021 |
| rosa_roxburghii | Rroxscaffold_6G00402720 |
| rosa_rugosa | Rorug03G0171100 Rorug03G0304800 |
| rosa_samantha | Rh3BG254500 Rh3CG250400 Rh3DG246600 |
| rosa_wichuraiana | Rw3G019920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 553 |
| AccII | CGCG | 4 cut(s) | 392, 539, 570, 626 |
| AclWI | GGATC | 2 cut(s) | 832, 845 |
| AcoI | YGGCCR | 2 cut(s) | 585, 601 |
| AcsI | RAATTY | 3 cut(s) | 192, 320, 892 |
| AcvI | CACGTG | 1 cut(s) | 637 |
| AcyI | GRCGYC | 1 cut(s) | 384 |
| AdeI | CACNNNGTG | 1 cut(s) | 637 |
| AfaI | GTAC | 5 cut(s) | 401, 641, 788, 856, 959 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 583, 812, 813, 834 |
| AflIII | ACRYGT | 2 cut(s) | 636, 960 |
| AgsI | TTSAA | 2 cut(s) | 479, 874 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 945 |
| AluBI | AGCT | 2 cut(s) | 256, 732 |
| AluI | AGCT | 2 cut(s) | 256, 732 |
| Alw21I | GWGCWC | 2 cut(s) | 576, 748 |
| Alw26I | GTCTC | 1 cut(s) | 212 |
| AlwI | GGATC | 2 cut(s) | 832, 845 |
| Ama87I | CYCGRG | 1 cut(s) | 521 |
| AoxI | GGCC | 6 cut(s) | 273, 526, 585, 601, 610, 825 |
| ApeKI | GCWGC | 4 cut(s) | 465, 492, 556, 923 |
| ApoI | RAATTY | 3 cut(s) | 192, 320, 892 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 896 |
| AspLEI | GCGC | 3 cut(s) | 329, 541, 628 |
| AspS9I | GGNCC | 4 cut(s) | 57, 274, 526, 826 |
| AsuC2I | CCSGG | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 7 cut(s) | 31, 68, 83, 149, 672, 677, 683 |
| AvaI | CYCGRG | 1 cut(s) | 521 |
| AvaII | GGWCC | 1 cut(s) | 57 |
| BamHI | GGATCC | 1 cut(s) | 837 |
| BanII | GRGCYC | 1 cut(s) | 821 |
| BbrPI | CACGTG | 1 cut(s) | 637 |
| BbsI | GAAGAC | 2 cut(s) | 351, 387 |
| Bbv12I | GWGCWC | 2 cut(s) | 576, 748 |
| BbvI | GCAGC | 4 cut(s) | 477, 479, 568, 935 |
| BccI | CCATC | 5 cut(s) | 29, 74, 696, 715, 970 |
| BceAI | ACGGC | 3 cut(s) | 625, 658, 805 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 304, 338 |
| BcnI | CCSGG | 1 cut(s) | 272 |
| BcoDI | GTCTC | 1 cut(s) | 212 |
| BfaI | CTAG | 4 cut(s) | 666, 729, 759, 867 |
| BfmI | CTRYAG | 1 cut(s) | 843 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 312, 609 |
| BisI | GCNGC | 7 cut(s) | 387, 390, 466, 493, 554, 557, 924 |
| BlsI | GCNGC | 7 cut(s) | 388, 391, 467, 494, 555, 558, 925 |
| Bme1390I | CCNGG | 1 cut(s) | 272 |
| Bme18I | GGWCC | 1 cut(s) | 57 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 945 |
| BmeT110I | CYCGRG | 1 cut(s) | 521 |
| BmgT120I | GGNCC | 4 cut(s) | 57, 274, 526, 826 |
| BmiI | GGNNCC | 5 cut(s) | 59, 276, 527, 818, 839 |
| BmrFI | CCNGG | 1 cut(s) | 272 |
| BmsI | GCATC | 1 cut(s) | 309 |
| BpiI | GAAGAC | 2 cut(s) | 351, 387 |
| BpmI | CTGGAG | 1 cut(s) | 563 |
| BpuEI | CTTGAG | 1 cut(s) | 207 |
| BpuMI | CCSGG | 1 cut(s) | 272 |
| BsaAI | YACGTR | 2 cut(s) | 637, 961 |
| BsaHI | GRCGYC | 1 cut(s) | 384 |
| BsaJI | CCNNGG | 4 cut(s) | 339, 520, 588, 607 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 55, 85, 716, 746 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 583, 812, 813, 834 |
| Bse118I | RCCGGY | 2 cut(s) | 599, 902 |
| Bse1I | ACTGG | 1 cut(s) | 580 |
| Bse3DI | GCAATG | 1 cut(s) | 735 |
| BseDI | CCNNGG | 4 cut(s) | 339, 520, 588, 607 |
| BseGI | GGATG | 3 cut(s) | 66, 264, 300 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 583, 812, 813, 834 |
| BseMI | GCAATG | 1 cut(s) | 735 |
| BseMII | CTCAG | 1 cut(s) | 266 |
| BseNI | ACTGG | 1 cut(s) | 580 |
| BseRI | GAGGAG | 6 cut(s) | 63, 94, 97, 113, 137, 926 |
| BseXI | GCAGC | 4 cut(s) | 477, 479, 568, 935 |
| Bsh1236I | CGCG | 4 cut(s) | 392, 539, 570, 626 |
| BshFI | GGCC | 6 cut(s) | 275, 528, 587, 603, 612, 827 |
| BsiHKAI | GWGCWC | 2 cut(s) | 576, 748 |
| BsiHKCI | CYCGRG | 1 cut(s) | 521 |
| BsiSI | CCGG | 5 cut(s) | 272, 469, 496, 600, 903 |
| BsiWI | CGTACG | 1 cut(s) | 786 |
| BslFI | GGGAC | 2 cut(s) | 796, 952 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 583, 812, 813, 834 |
| BsmAI | GTCTC | 1 cut(s) | 212 |
| BsmFI | GGGAC | 2 cut(s) | 796, 952 |
| BsmI | GAATGC | 1 cut(s) | 485 |
| BsnI | GGCC | 6 cut(s) | 275, 528, 587, 603, 612, 827 |
| BsoBI | CYCGRG | 1 cut(s) | 521 |
| Bsp1286I | GDGCHC | 3 cut(s) | 576, 748, 821 |
| Bsp143I | GATC | 1 cut(s) | 837 |
| Bsp19I | CCATGG | 1 cut(s) | 588 |
| BspANI | GGCC | 6 cut(s) | 275, 528, 587, 603, 612, 827 |
| BspCNI | CTCAG | 1 cut(s) | 265 |
| BspFNI | CGCG | 4 cut(s) | 392, 539, 570, 626 |
| BspHI | TCATGA | 1 cut(s) | 231 |
| BspLI | GGNNCC | 5 cut(s) | 59, 276, 527, 818, 839 |
| BspMAI | CTGCAG | 1 cut(s) | 847 |
| BspPI | GGATC | 2 cut(s) | 832, 845 |
| BsrBI | CCGCTC | 1 cut(s) | 553 |
| BsrDI | GCAATG | 1 cut(s) | 735 |
| BsrFI | RCCGGY | 2 cut(s) | 599, 902 |
| BsrI | ACTGG | 1 cut(s) | 580 |
| BssAI | RCCGGY | 2 cut(s) | 599, 902 |
| BssECI | CCNNGG | 4 cut(s) | 339, 520, 588, 607 |
| BssMI | GATC | 1 cut(s) | 837 |
| BssNI | GRCGYC | 1 cut(s) | 384 |
| BssT1I | CCWWGG | 1 cut(s) | 588 |
| Bst4CI | ACNGT | 2 cut(s) | 884, 957 |
| BstACI | GRCGYC | 1 cut(s) | 384 |
| BstBAI | YACGTR | 2 cut(s) | 637, 961 |
| BstC8I | GCNNGC | 7 cut(s) | 376, 561, 572, 597, 601, 794, 904 |
| BstDEI | CTNAG | 1 cut(s) | 252 |
| BstDSI | CCRYGG | 3 cut(s) | 339, 588, 607 |
| BstF5I | GGATG | 3 cut(s) | 66, 264, 300 |
| BstFNI | CGCG | 4 cut(s) | 392, 539, 570, 626 |
| BstHHI | GCGC | 3 cut(s) | 329, 541, 628 |
| BstKTI | GATC | 1 cut(s) | 840 |
| BstMAI | GTCTC | 1 cut(s) | 212 |
| BstMBI | GATC | 1 cut(s) | 837 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 312, 450, 465, 489, 609, 729 |
| BstNSI | RCATGY | 1 cut(s) | 599 |
| BstSCI | CCNGG | 1 cut(s) | 270 |
| BstSFI | CTRYAG | 1 cut(s) | 843 |
| BstUI | CGCG | 4 cut(s) | 392, 539, 570, 626 |
| BstV1I | GCAGC | 4 cut(s) | 477, 479, 568, 935 |
| BstV2I | GAAGAC | 2 cut(s) | 351, 387 |
| BstX2I | RGATCY | 1 cut(s) | 837 |
| BstYI | RGATCY | 1 cut(s) | 837 |
| BsuRI | GGCC | 6 cut(s) | 275, 528, 587, 603, 612, 827 |
| BtgI | CCRYGG | 3 cut(s) | 339, 588, 607 |
| BtsCI | GGATG | 3 cut(s) | 66, 264, 300 |
| Cac8I | GCNNGC | 7 cut(s) | 376, 561, 572, 597, 601, 794, 904 |
| CciI | TCATGA | 1 cut(s) | 231 |
| CfoI | GCGC | 3 cut(s) | 329, 541, 628 |
| Cfr10I | RCCGGY | 2 cut(s) | 599, 902 |
| Cfr13I | GGNCC | 4 cut(s) | 57, 274, 526, 826 |
| CseI | GACGC | 2 cut(s) | 392, 632 |
| Csp6I | GTAC | 5 cut(s) | 400, 640, 787, 855, 958 |
| CviAII | CATG | 5 cut(s) | 199, 232, 589, 596, 995 |
| CviQI | GTAC | 5 cut(s) | 400, 640, 787, 855, 958 |
| DdeI | CTNAG | 1 cut(s) | 252 |
| DpnI | GATC | 1 cut(s) | 839 |
| DpnII | GATC | 1 cut(s) | 837 |
| DraIII | CACNNNGTG | 1 cut(s) | 637 |
| DriI | GACNNNNNGTC | 1 cut(s) | 945 |
| EaeI | YGGCCR | 2 cut(s) | 585, 601 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 945 |
| EciI | GGCGGA | 3 cut(s) | 257, 293, 850 |
| Eco130I | CCWWGG | 1 cut(s) | 588 |
| Eco24I | GRGCYC | 1 cut(s) | 821 |
| Eco47I | GGWCC | 1 cut(s) | 57 |
| Eco72I | CACGTG | 1 cut(s) | 637 |
| Eco88I | CYCGRG | 1 cut(s) | 521 |
| EcoO109I | RGGNCCY | 1 cut(s) | 57 |
| EcoRI | GAATTC | 1 cut(s) | 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 588 |
| EcoT38I | GRGCYC | 1 cut(s) | 821 |
| ErhI | CCWWGG | 1 cut(s) | 588 |
| FaeI | CATG | 5 cut(s) | 202, 235, 592, 599, 998 |
| FaqI | GGGAC | 2 cut(s) | 796, 952 |
| FatI | CATG | 5 cut(s) | 198, 231, 588, 595, 994 |
| FauI | CCCGC | 1 cut(s) | 899 |
| Fnu4HI | GCNGC | 7 cut(s) | 387, 390, 466, 493, 554, 557, 924 |
| FokI | GGATG | 3 cut(s) | 53, 251, 287 |
| FriOI | GRGCYC | 1 cut(s) | 821 |
| Fsp4HI | GCNGC | 7 cut(s) | 387, 390, 466, 493, 554, 557, 924 |
| FspBI | CTAG | 4 cut(s) | 666, 729, 759, 867 |
| GlaI | GCGC | 3 cut(s) | 328, 540, 627 |
| GluI | GCNGC | 7 cut(s) | 387, 390, 466, 493, 554, 557, 924 |
| GsuI | CTGGAG | 1 cut(s) | 563 |
| HaeIII | GGCC | 6 cut(s) | 275, 528, 587, 603, 612, 827 |
| HapII | CCGG | 5 cut(s) | 272, 469, 496, 600, 903 |
| HgaI | GACGC | 2 cut(s) | 392, 632 |
| HhaI | GCGC | 3 cut(s) | 329, 541, 628 |
| Hin1I | GRCGYC | 1 cut(s) | 384 |
| Hin1II | CATG | 5 cut(s) | 202, 235, 592, 599, 998 |
| Hin6I | GCGC | 3 cut(s) | 327, 539, 626 |
| HinP1I | GCGC | 3 cut(s) | 327, 539, 626 |
| HincII | GTYRAC | 1 cut(s) | 286 |
| HindII | GTYRAC | 1 cut(s) | 286 |
| HinfI | GANTC | 6 cut(s) | 34, 220, 242, 347, 353, 968 |
| HpaII | CCGG | 5 cut(s) | 272, 469, 496, 600, 903 |
| HphI | GGTGA | 7 cut(s) | 31, 68, 83, 149, 672, 677, 683 |
| Hpy166II | GTNNAC | 2 cut(s) | 286, 640 |
| Hpy188I | TCNGA | 2 cut(s) | 33, 352 |
| Hpy188III | TCNNGA | 5 cut(s) | 224, 232, 505, 620, 878 |
| Hpy8I | GTNNAC | 2 cut(s) | 286, 640 |
| Hpy99I | CGWCG | 2 cut(s) | 626, 976 |
| HpyAV | CCTTC | 4 cut(s) | 208, 271, 289, 913 |
| HpyCH4III | ACNGT | 2 cut(s) | 884, 957 |
| HpyCH4IV | ACGT | 4 cut(s) | 237, 636, 785, 960 |
| HpyCH4V | TGCA | 4 cut(s) | 595, 845, 988, 998 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 312, 450, 465, 489, 609, 729 |
| HpyF3I | CTNAG | 1 cut(s) | 252 |
| HpySE526I | ACGT | 4 cut(s) | 237, 636, 785, 960 |
| Hsp92I | GRCGYC | 1 cut(s) | 384 |
| Hsp92II | CATG | 5 cut(s) | 202, 235, 592, 599, 998 |
| HspAI | GCGC | 3 cut(s) | 327, 539, 626 |
| KroI | GCCGGC | 2 cut(s) | 599, 902 |
| KroNI | GCCGGC | 2 cut(s) | 601, 904 |
| Kzo9I | GATC | 1 cut(s) | 837 |
| LmnI | GCTCC | 3 cut(s) | 261, 737, 816 |
| Lsp1109I | GCAGC | 4 cut(s) | 477, 479, 568, 935 |
| LweI | GCATC | 1 cut(s) | 309 |
| MaeI | CTAG | 4 cut(s) | 666, 729, 759, 867 |
| MaeII | ACGT | 4 cut(s) | 237, 636, 785, 960 |
| MaeIII | GTNAC | 1 cut(s) | 878 |
| MalI | GATC | 1 cut(s) | 839 |
| MbiI | CCGCTC | 1 cut(s) | 553 |
| MboI | GATC | 1 cut(s) | 837 |
| MboII | GAAGA | 2 cut(s) | 356, 392 |
| MfeI | CAATTG | 1 cut(s) | 14 |
| MflI | RGATCY | 1 cut(s) | 837 |
| MhlI | GDGCHC | 3 cut(s) | 576, 748, 821 |
| MluCI | AATT | 6 cut(s) | 14, 131, 192, 320, 892, 1004 |
| MlyI | GAGTC | 5 cut(s) | 28, 214, 251, 341, 962 |
| MreI | CGCCGGCG | 1 cut(s) | 902 |
| MroNI | GCCGGC | 2 cut(s) | 599, 902 |
| MroXI | GAANNNNTTC | 1 cut(s) | 896 |
| MseI | TTAA | 1 cut(s) | 647 |
| MspI | CCGG | 5 cut(s) | 272, 469, 496, 600, 903 |
| MspR9I | CCNGG | 1 cut(s) | 272 |
| MunI | CAATTG | 1 cut(s) | 14 |
| Mva1269I | GAATGC | 1 cut(s) | 485 |
| MvnI | CGCG | 4 cut(s) | 392, 539, 570, 626 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 312, 450, 465, 489, 609, 729 |
| NaeI | GCCGGC | 2 cut(s) | 601, 904 |
| NciI | CCSGG | 1 cut(s) | 272 |
| NcoI | CCATGG | 1 cut(s) | 588 |
| NdeII | GATC | 1 cut(s) | 837 |
| NgoMIV | GCCGGC | 2 cut(s) | 599, 902 |
| NlaIII | CATG | 5 cut(s) | 202, 235, 592, 599, 998 |
| NlaIV | GGNNCC | 5 cut(s) | 59, 276, 527, 818, 839 |
| NmuCI | GTSAC | 1 cut(s) | 878 |
| NspI | RCATGY | 1 cut(s) | 599 |
| PaeI | GCATGC | 1 cut(s) | 599 |
| PagI | TCATGA | 1 cut(s) | 231 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 567, 977 |
| PctI | GAATGC | 1 cut(s) | 485 |
| PdiI | GCCGGC | 2 cut(s) | 601, 904 |
| PdmI | GAANNNNTTC | 1 cut(s) | 896 |
| PfeI | GAWTC | 1 cut(s) | 353 |
| Pfl23II | CGTACG | 1 cut(s) | 786 |
| PkrI | GCNGC | 7 cut(s) | 388, 391, 467, 494, 555, 558, 925 |
| PleI | GAGTC | 5 cut(s) | 28, 214, 250, 341, 962 |
| PmaCI | CACGTG | 1 cut(s) | 637 |
| PmlI | CACGTG | 1 cut(s) | 637 |
| PpsI | GAGTC | 5 cut(s) | 28, 214, 250, 341, 962 |
| Ppu21I | YACGTR | 2 cut(s) | 637, 961 |
| PpuMI | RGGWCCY | 1 cut(s) | 57 |
| Psp5II | RGGWCCY | 1 cut(s) | 57 |
| PspCI | CACGTG | 1 cut(s) | 637 |
| PspLI | CGTACG | 1 cut(s) | 786 |
| PspN4I | GGNNCC | 5 cut(s) | 59, 276, 527, 818, 839 |
| PspPI | GGNCC | 4 cut(s) | 57, 274, 526, 826 |
| PspPPI | RGGWCCY | 1 cut(s) | 57 |
| PstI | CTGCAG | 1 cut(s) | 847 |
| PsuI | RGATCY | 1 cut(s) | 837 |
| RsaI | GTAC | 5 cut(s) | 401, 641, 788, 856, 959 |
| RsaNI | GTAC | 5 cut(s) | 400, 640, 787, 855, 958 |
| SaqAI | TTAA | 1 cut(s) | 647 |
| SatI | GCNGC | 7 cut(s) | 387, 390, 466, 493, 554, 557, 924 |
| Sau3AI | GATC | 1 cut(s) | 837 |
| Sau96I | GGNCC | 4 cut(s) | 57, 274, 526, 826 |
| SchI | GAGTC | 5 cut(s) | 28, 214, 251, 341, 962 |
| ScrFI | CCNGG | 1 cut(s) | 272 |
| SduI | GDGCHC | 3 cut(s) | 576, 748, 821 |
| SfaNI | GCATC | 1 cut(s) | 309 |
| SfcI | CTRYAG | 1 cut(s) | 843 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 609 |
| SgrAI | CRCCGGYG | 1 cut(s) | 902 |
| SinI | GGWCC | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 222 |
| SmoI | CTYRAG | 1 cut(s) | 222 |
| SphI | GCATGC | 1 cut(s) | 599 |
| Sse9I | AATT | 6 cut(s) | 14, 131, 192, 320, 892, 1004 |
| SspMI | CTAG | 4 cut(s) | 666, 729, 759, 867 |
| StyD4I | CCNGG | 1 cut(s) | 270 |
| StyI | CCWWGG | 1 cut(s) | 588 |
| TaaI | ACNGT | 2 cut(s) | 884, 957 |
| TaiI | ACGT | 4 cut(s) | 240, 639, 788, 963 |
| TaqI | TCGA | 3 cut(s) | 360, 887, 974 |
| TasI | AATT | 6 cut(s) | 14, 131, 192, 320, 892, 1004 |
| TatI | WGTACW | 1 cut(s) | 399 |
| TauI | GCSGC | 3 cut(s) | 389, 392, 556 |
| TfiI | GAWTC | 1 cut(s) | 353 |
| Tru1I | TTAA | 1 cut(s) | 647 |
| Tru9I | TTAA | 1 cut(s) | 647 |
| TseFI | GTSAC | 1 cut(s) | 878 |
| TseI | GCWGC | 4 cut(s) | 465, 492, 556, 923 |
| Tsp45I | GTSAC | 1 cut(s) | 878 |
| TspDTI | ATGAA | 7 cut(s) | 187, 220, 248, 253, 665, 905, 932 |
| TspGWI | ACGGA | 2 cut(s) | 356, 783 |
| VpaK11BI | GGWCC | 1 cut(s) | 57 |
| XapI | RAATTY | 3 cut(s) | 192, 320, 892 |
| XceI | RCATGY | 1 cut(s) | 599 |
| XmnI | GAANNNNTTC | 1 cut(s) | 896 |
| XspI | CTAG | 4 cut(s) | 666, 729, 759, 867 |