Rroxscaffold_6G00402720

Zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
25220553 .. 25224644
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402720.1

Sequence Viewer

Length: 972 bp
ATGGAGAAGATTGAGAGGGAAACCCAAGACTTCATGAACGTGGAATCCTTCTCTCAGCTGCCCTTTATCCGGCCGGCTCCTCCTGTCAACAAAGAAAAGGGCATTAGGCTCTTTGGCATAGAATTCGGGGCCGGCGTCGACACCAACCACGAGTCGGAATCGGTCGACAACAATGTGAGTGAGAACGGGAAAGAAGACGAGGGCAACAAGCACACCAACACCAACAACACAAACATAAGCAACAGCAACAGCGAAAATGGCAGCGAGAGTAGCCGCAGATTCGAGTGCCATTACTGCTGCAGAAACTTCCCGACCAGCCAAGCCCTCGGCGGCCACCAAAACGCACACAAAAGAGAGCGGCAGCACGCCAAACGTGAGCATCTCCAGTCGGCTATGGTGCATGGAGGGCTGGTCTCCCACGACGCTGCACACGTGTACGGCTTGATGAATTACAGCCGCCTTGGCTCTGCTCATCATCACCATCATCATCCCACCTATCCGTCCTGGAACACTAACTACAGTTCTAGTACTACTACTACCAGTCCTAGGTTCTATGGAAGCCCCGGTGGATCATACGGCACTCAATCTGCTCCGATAAACGGGAGTCCTTTGGGCTTGTGGCGGATCCCATCTGCTAACCCTAGTTTCAATCGTGACCGTTCGTTGATGAACCCGCTGGTGACGCCATTGTTCGCCGGAGAAGAACTGAAGCCGGTTGTTGTTGGTGGGTCTGGTAATTCTCAAAGCCGGTACATGTATGAATCGAGTGTGCAGCAAGACCATATGGCCCAACCGGTGAAAAGTGCCGAGGCCACGCCACGGTCACCACCACCACGCTCTAGGCCACCAATGCGTACGTCTTGTGCCATCATCCTTTACCACCTCACCATCATCATTGGAGCCGCCGCCGCAAGAGAGCGAAGAAGGGCTCACGGACTCAAGCTCCTCATCACGATGGACGCTAACAACTAA

Protein Analysis

323

Amino Acids

35.74

Weight (kDa)

8.86

Isoelectric Point (pI)

61.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 358
AccI GTMKAC 2 cut(s) 138, 165
AciI CCGC 9 cut(s) 274, 330, 358, 457, 622, 674, 903, 906, 909
AclWI GGATC 3 cut(s) 577, 619, 632
AcoI YGGCCR 2 cut(s) 71, 331
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 728
AcvI CACGTG 1 cut(s) 433
AcyI GRCGYC 2 cut(s) 135, 683
AfaI GTAC 4 cut(s) 437, 529, 752, 856
AfiI CCNNNNNNNGG 5 cut(s) 69, 154, 546, 599, 819
AflIII ACRYGT 3 cut(s) 430, 432, 753
AgeI ACCGGT 1 cut(s) 793
AgsI TTSAA 1 cut(s) 649
AjnI CCWGG 1 cut(s) 503
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
AluBI AGCT 2 cut(s) 58, 943
AluI AGCT 2 cut(s) 58, 943
Alw26I GTCTC 1 cut(s) 418
AlwI GGATC 3 cut(s) 577, 619, 632
AoxI GGCC 6 cut(s) 71, 129, 331, 786, 810, 842
ApeKI GCWGC 6 cut(s) 58, 261, 297, 361, 425, 772
ApoI RAATTY 1 cut(s) 122
AsiGI ACCGGT 1 cut(s) 793
AspA2I CCTAGG 1 cut(s) 545
AspS9I GGNCC 2 cut(s) 129, 787
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 5 cut(s) 470, 691, 808, 816, 877
AvrII CCTAGG 1 cut(s) 545
BamHI GGATCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 931
BauI CACGAG 1 cut(s) 149
BbrPI CACGTG 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 201
BbvI GCAGC 6 cut(s) 45, 273, 284, 373, 412, 784
BccI CCATC 5 cut(s) 489, 637, 875, 896, 949
BceAI ACGGC 2 cut(s) 454, 592
BcgI CGANNNNNNTGC 2 cut(s) 106, 140
BciT130I CCWGG 1 cut(s) 505
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 418
BfaI CTAG 4 cut(s) 525, 546, 642, 840
BfmI CTRYAG 2 cut(s) 298, 517
BglI GCCNNNNNGGC 1 cut(s) 462
BlnI CCTAGG 1 cut(s) 545
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 2 cut(s) 505, 564
BmgT120I GGNCC 2 cut(s) 129, 787
BmiI GGNNCC 4 cut(s) 78, 130, 626, 901
BmrFI CCNGG 2 cut(s) 505, 564
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 564
BsaAI YACGTR 1 cut(s) 433
BsaHI GRCGYC 2 cut(s) 135, 683
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 6 cut(s) 325, 460, 545, 562, 807, 818
BsaWI WCCGGW 1 cut(s) 793
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 927, 957
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 154, 546, 599, 819
Bse118I RCCGGY 5 cut(s) 73, 131, 712, 747, 793
Bse1I ACTGG 2 cut(s) 385, 540
BseBI CCWGG 1 cut(s) 505
BseDI CCNNGG 6 cut(s) 325, 460, 545, 562, 807, 818
BseGI GGATG 2 cut(s) 487, 870
BseLI CCNNNNNNNGG 5 cut(s) 69, 154, 546, 599, 819
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 2 cut(s) 385, 540
BseRI GAGGAG 2 cut(s) 69, 935
BseX3I CGGCCG 1 cut(s) 71
BseXI GCAGC 6 cut(s) 45, 273, 284, 373, 412, 784
BsgI GTGCAG 2 cut(s) 411, 791
Bsh1285I CGRYCG 2 cut(s) 74, 165
BshFI GGCC 6 cut(s) 73, 131, 333, 788, 812, 844
BshTI ACCGGT 1 cut(s) 793
BsiEI CGRYCG 2 cut(s) 74, 165
BsiSI CCGG 8 cut(s) 70, 74, 132, 564, 696, 713, 748, 794
BsiWI CGTACG 1 cut(s) 854
BslI CCNNNNNNNGG 5 cut(s) 69, 154, 546, 599, 819
BsmAI GTCTC 1 cut(s) 418
BsnI GGCC 6 cut(s) 73, 131, 333, 788, 812, 844
Bso31I GGTCTC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 931
Bsp143I GATC 2 cut(s) 569, 624
BspACI CCGC 9 cut(s) 274, 330, 358, 457, 622, 674, 903, 906, 909
BspANI GGCC 6 cut(s) 73, 131, 333, 788, 812, 844
BspCNI CTCAG 1 cut(s) 67
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 4 cut(s) 78, 130, 626, 901
BspMAI CTGCAG 1 cut(s) 302
BspPI GGATC 3 cut(s) 577, 619, 632
BspTNI GGTCTC 1 cut(s) 418
BsrBI CCGCTC 1 cut(s) 358
BsrFI RCCGGY 5 cut(s) 73, 131, 712, 747, 793
BsrI ACTGG 2 cut(s) 385, 540
BssAI RCCGGY 5 cut(s) 73, 131, 712, 747, 793
BssECI CCNNGG 6 cut(s) 325, 460, 545, 562, 807, 818
BssMI GATC 2 cut(s) 569, 624
BssNI GRCGYC 2 cut(s) 135, 683
BssSI CACGAG 1 cut(s) 149
BssT1I CCWWGG 2 cut(s) 460, 545
Bst2BI CACGAG 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 505
Bst4CI ACNGT 3 cut(s) 521, 659, 822
BstACI GRCGYC 2 cut(s) 135, 683
BstBAI YACGTR 1 cut(s) 433
BstC8I GCNNGC 3 cut(s) 75, 133, 366
BstDEI CTNAG 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 818
BstEII GGTNACC 1 cut(s) 822
BstF5I GGATG 2 cut(s) 487, 870
BstKTI GATC 2 cut(s) 572, 627
BstMAI GTCTC 1 cut(s) 418
BstMBI GATC 2 cut(s) 569, 624
BstMCI CGRYCG 2 cut(s) 74, 165
BstMWI GCNNNNNNNGC 8 cut(s) 258, 270, 294, 406, 462, 682, 850, 908
BstNI CCWGG 1 cut(s) 505
BstNSI RCATGY 1 cut(s) 757
BstPI GGTNACC 1 cut(s) 822
BstSCI CCNGG 2 cut(s) 503, 562
BstSFI CTRYAG 2 cut(s) 298, 517
BstV1I GCAGC 6 cut(s) 45, 273, 284, 373, 412, 784
BstV2I GAAGAC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 624
BstYI RGATCY 1 cut(s) 624
BstZI CGGCCG 1 cut(s) 71
BsuRI GGCC 6 cut(s) 73, 131, 333, 788, 812, 844
BtgI CCRYGG 1 cut(s) 818
BtsCI GGATG 2 cut(s) 487, 870
Cac8I GCNNGC 3 cut(s) 75, 133, 366
CciI TCATGA 1 cut(s) 33
Cfr10I RCCGGY 5 cut(s) 73, 131, 712, 747, 793
Cfr13I GGNCC 2 cut(s) 129, 787
CseI GACGC 3 cut(s) 124, 431, 691
Csp6I GTAC 4 cut(s) 436, 528, 751, 855
CspAI ACCGGT 1 cut(s) 793
CviAII CATG 3 cut(s) 34, 401, 754
CviQI GTAC 4 cut(s) 436, 528, 751, 855
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 571, 626
DpnII GATC 2 cut(s) 569, 624
EaeI YGGCCR 2 cut(s) 71, 331
EagI CGGCCG 1 cut(s) 71
EciI GGCGGA 1 cut(s) 637
EclXI CGGCCG 1 cut(s) 71
Eco130I CCWWGG 2 cut(s) 460, 545
Eco24I GRGCYC 1 cut(s) 931
Eco31I GGTCTC 1 cut(s) 418
Eco52I CGGCCG 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 728
Eco72I CACGTG 1 cut(s) 433
Eco91I GGTNACC 1 cut(s) 822
EcoO65I GGTNACC 1 cut(s) 822
EcoRI GAATTC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 503
EcoT14I CCWWGG 2 cut(s) 460, 545
EcoT38I GRGCYC 1 cut(s) 931
ErhI CCWWGG 2 cut(s) 460, 545
FaeI CATG 3 cut(s) 37, 404, 757
FatI CATG 3 cut(s) 33, 400, 753
FauI CCCGC 1 cut(s) 681
FauNDI CATATG 1 cut(s) 783
FblI GTMKAC 2 cut(s) 138, 165
FokI GGATG 2 cut(s) 474, 857
FriOI GRGCYC 1 cut(s) 931
FspBI CTAG 4 cut(s) 525, 546, 642, 840
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 6 cut(s) 73, 131, 333, 788, 812, 844
HapII CCGG 8 cut(s) 70, 74, 132, 564, 696, 713, 748, 794
HgaI GACGC 3 cut(s) 124, 431, 691
Hin1I GRCGYC 2 cut(s) 135, 683
Hin1II CATG 3 cut(s) 37, 404, 757
HincII GTYRAC 3 cut(s) 88, 139, 166
HindII GTYRAC 3 cut(s) 88, 139, 166
HinfI GANTC 7 cut(s) 44, 152, 158, 279, 604, 761, 936
HpaII CCGG 8 cut(s) 70, 74, 132, 564, 696, 713, 748, 794
HphI GGTGA 5 cut(s) 470, 691, 808, 816, 877
Hpy166II GTNNAC 4 cut(s) 88, 139, 166, 436
Hpy188I TCNGA 2 cut(s) 157, 594
Hpy188III TCNNGA 4 cut(s) 34, 310, 653, 952
Hpy8I GTNNAC 4 cut(s) 88, 139, 166, 436
Hpy99I CGWCG 2 cut(s) 140, 425
HpyAV CCTTC 2 cut(s) 58, 918
HpyCH4III ACNGT 3 cut(s) 521, 659, 822
HpyCH4IV ACGT 4 cut(s) 39, 373, 432, 857
HpyCH4V TGCA 4 cut(s) 300, 400, 428, 772
HpyF10VI GCNNNNNNNGC 8 cut(s) 258, 270, 294, 406, 462, 682, 850, 908
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 4 cut(s) 39, 373, 432, 857
Hsp92I GRCGYC 2 cut(s) 135, 683
Hsp92II CATG 3 cut(s) 37, 404, 757
KroI GCCGGC 2 cut(s) 73, 131
KroNI GCCGGC 2 cut(s) 75, 133
Kzo9I GATC 2 cut(s) 569, 624
LmnI GCTCC 4 cut(s) 82, 595, 899, 948
Lsp1109I GCAGC 6 cut(s) 45, 273, 284, 373, 412, 784
LweI GCATC 1 cut(s) 388
MaeI CTAG 4 cut(s) 525, 546, 642, 840
MaeII ACGT 4 cut(s) 39, 373, 432, 857
MaeIII GTNAC 3 cut(s) 653, 679, 822
MalI GATC 2 cut(s) 571, 626
MbiI CCGCTC 1 cut(s) 358
MboI GATC 2 cut(s) 569, 624
MboII GAAGA 4 cut(s) 19, 206, 713, 933
MflI RGATCY 1 cut(s) 624
MhlI GDGCHC 1 cut(s) 931
MluCI AATT 3 cut(s) 122, 448, 736
MlyI GAGTC 3 cut(s) 161, 613, 930
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 8 cut(s) 9, 90, 193, 335, 398, 802, 893, 956
MroNI GCCGGC 2 cut(s) 73, 131
MslI CAYNNNNRTG 2 cut(s) 38, 953
MspA1I CMGCKG 2 cut(s) 58, 676
MspI CCGG 8 cut(s) 70, 74, 132, 564, 696, 713, 748, 794
MspR9I CCNGG 2 cut(s) 505, 564
MvaI CCWGG 1 cut(s) 505
MwoI GCNNNNNNNGC 8 cut(s) 258, 270, 294, 406, 462, 682, 850, 908
NaeI GCCGGC 2 cut(s) 75, 133
NciI CCSGG 1 cut(s) 564
NdeI CATATG 1 cut(s) 783
NdeII GATC 2 cut(s) 569, 624
NgoMIV GCCGGC 2 cut(s) 73, 131
NlaIII CATG 3 cut(s) 37, 404, 757
NlaIV GGNNCC 4 cut(s) 78, 130, 626, 901
NmeAIII GCCGAG 2 cut(s) 306, 832
NmuCI GTSAC 3 cut(s) 653, 679, 822
NspI RCATGY 1 cut(s) 757
PagI TCATGA 1 cut(s) 33
PciI ACATGT 1 cut(s) 753
PcsI WCGNNNNNNNCGW 2 cut(s) 132, 429
PdiI GCCGGC 2 cut(s) 75, 133
PfeI GAWTC 4 cut(s) 44, 158, 279, 761
Pfl23II CGTACG 1 cut(s) 854
PfoI TCCNGGA 1 cut(s) 503
PinAI ACCGGT 1 cut(s) 793
PleI GAGTC 3 cut(s) 160, 612, 930
PmaCI CACGTG 1 cut(s) 433
PmlI CACGTG 1 cut(s) 433
PpsI GAGTC 3 cut(s) 160, 612, 930
Ppu21I YACGTR 1 cut(s) 433
PscI ACATGT 1 cut(s) 753
Psp6I CCWGG 1 cut(s) 503
PspCI CACGTG 1 cut(s) 433
PspEI GGTNACC 1 cut(s) 822
PspGI CCWGG 1 cut(s) 503
PspLI CGTACG 1 cut(s) 854
PspN4I GGNNCC 4 cut(s) 78, 130, 626, 901
PspPI GGNCC 2 cut(s) 129, 787
PsrI GAACNNNNNNTAC 2 cut(s) 500, 532
PstI CTGCAG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 58
RsaI GTAC 4 cut(s) 437, 529, 752, 856
RsaNI GTAC 4 cut(s) 436, 528, 751, 855
RseI CAYNNNNRTG 2 cut(s) 38, 953
SalI GTCGAC 2 cut(s) 137, 164
Sau3AI GATC 2 cut(s) 569, 624
Sau96I GGNCC 2 cut(s) 129, 787
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 3 cut(s) 161, 613, 930
ScrFI CCNGG 2 cut(s) 505, 564
SduI GDGCHC 1 cut(s) 931
SetI ASST 9 cut(s) 42, 60, 376, 435, 497, 551, 860, 885, 945
SfaNI GCATC 1 cut(s) 388
SfcI CTRYAG 2 cut(s) 298, 517
SmiMI CAYNNNNRTG 2 cut(s) 38, 953
SmlI CTYRAG 1 cut(s) 938
SmoI CTYRAG 1 cut(s) 938
Sse9I AATT 3 cut(s) 122, 448, 736
SsiI CCGC 9 cut(s) 274, 330, 358, 457, 622, 674, 903, 906, 909
SspMI CTAG 4 cut(s) 525, 546, 642, 840
StyD4I CCNGG 2 cut(s) 503, 562
StyI CCWWGG 2 cut(s) 460, 545
TaaI ACNGT 3 cut(s) 521, 659, 822
TaiI ACGT 4 cut(s) 42, 376, 435, 860
TaqI TCGA 4 cut(s) 138, 165, 282, 764
TaqII GACCGA 1 cut(s) 151
TasI AATT 3 cut(s) 122, 448, 736
TatI WGTACW 1 cut(s) 527
TauI GCSGC 7 cut(s) 276, 333, 361, 459, 905, 908, 911
TfiI GAWTC 4 cut(s) 44, 158, 279, 761
TseFI GTSAC 3 cut(s) 653, 679, 822
TseI GCWGC 6 cut(s) 58, 261, 297, 361, 425, 772
Tsp45I GTSAC 3 cut(s) 653, 679, 822
TspDTI ATGAA 5 cut(s) 22, 50, 461, 683, 774
TspGWI ACGGA 2 cut(s) 489, 948
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 757
XmaJI CCTAGG 1 cut(s) 545
XmiI GTMKAC 2 cut(s) 138, 165
XspI CTAG 4 cut(s) 525, 546, 642, 840
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.