Rmu_sc0005645.1_g000021

Zinc finger protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005645.1
Physical Location & Seq
Reverse (-)
104970 .. 108830
3861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005645.1_g000021.1.cds

Sequence Viewer

Length: 1152 bp
atggacatcagctattgcagtccaagacggagaaaaagctgcaccgcggaggcttgtataaatggattagacctgtaccccattcttgcattctgtctcttgcgtctgcgattaggtagcagcttcagtcctcatatcctcgttgaaaacttgttccagcgattggacgattcaggtgcagaagcaaatagccagtgcgactctccattccggcatcgttctgtctccaccgccaaggcttgctgccagctttcagaagtttttagcattggaactcggccgttcatgagcgaccctatgttccaatgctggaaactgcagcagccaagtgtgttaagactttggccgttcatgaacgaccatatatatcttaacgcaggagcagatcaccatgaaggtccatgtatttctcggtgggttgagagagcttcaacaaaagcaggaagcccacaaaccggcgctcgtgcagttggtgacgagtttctgcaacccagaagacggcggcgagttcgtgcagccggcgccatcgatcgtacggccggcggcgagctcggagttcctttacgtcacctccgtgcagctaggtcggagttccggttagtgcagcgagctcggagttcgcgccatcgattgccggcggcgagttcaaacttcccgaccagccaagccctcggcggccaccaaaacgcacacaaaagagagcggcagcacgccaaacgcgagcatctccagtcggctatggtgcatggagggctggtctcccacgacgctgcacacgtgtacggcttgatgaattacagccgccttggctctgctcatcatcaccatcatcatcccacctatccgtcctggaacactaactacagttctagtactactactaccagtcctaggttctacggaagccccggtggatcatacggctctcaatctgctcccataaacgggagtcctttgggcttgtggcggatcccatctgctaaccctagtttcaatcgtgaccgttcgttgatgaacccgctggtgacgccgttgttcgccggagaagaactgaagccggttgttgttggtgggtctggtaattctcaaagccggtacatgtatgaatcgagtgtgcagcaagaccatgtgagtctggatcttcatctgtaa

Protein Analysis

383

Amino Acids

42.53

Weight (kDa)

9.8

Isoelectric Point (pI)

72.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 163
AccBSI CCGCTC 1 cut(s) 703
AccII CGCG 3 cut(s) 47, 622, 720
AclWI GGATC 4 cut(s) 922, 964, 977, 1146
AcoI YGGCCR 4 cut(s) 278, 344, 537, 676
AcuI CTGAAG 2 cut(s) 109, 1073
AcvI CACGTG 1 cut(s) 778
AcyI GRCGYC 2 cut(s) 522, 1028
AfaI GTAC 5 cut(s) 77, 535, 782, 874, 1097
AfiI CCNNNNNNNGG 6 cut(s) 163, 455, 498, 891, 944, 945
AflIII ACRYGT 3 cut(s) 775, 777, 1098
AgsI TTSAA 4 cut(s) 146, 432, 648, 994
AjnI CCWGG 1 cut(s) 848
AleI CACNNNNGTG 1 cut(s) 573
AluBI AGCT 8 cut(s) 12, 39, 123, 250, 428, 550, 581, 611
AluI AGCT 8 cut(s) 12, 39, 123, 250, 428, 550, 581, 611
Alw21I GWGCWC 2 cut(s) 552, 613
Alw26I GTCTC 3 cut(s) 101, 229, 763
AlwI GGATC 4 cut(s) 922, 964, 977, 1146
AoxI GGCC 4 cut(s) 278, 344, 537, 676
AspA2I CCTAGG 1 cut(s) 890
AspLEI GCGC 3 cut(s) 461, 524, 624
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 5 cut(s) 380, 485, 560, 815, 1036
AvaII GGWCC 1 cut(s) 398
AvrII CCTAGG 1 cut(s) 890
BamHI GGATCC 1 cut(s) 969
BanI GGYRCC 1 cut(s) 521
BanII GRGCYC 2 cut(s) 552, 613
BauI CACGAG 1 cut(s) 462
BbrPI CACGTG 1 cut(s) 778
BbsI GAAGAC 1 cut(s) 502
Bbv12I GWGCWC 2 cut(s) 552, 613
BccI CCATC 4 cut(s) 533, 633, 834, 982
BceAI ACGGC 7 cut(s) 265, 331, 515, 552, 799, 937, 1015
BcgI CGANNNNNNTGC 6 cut(s) 158, 192, 567, 593, 601, 627
BciT130I CCWGG 1 cut(s) 850
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 3 cut(s) 101, 229, 763
BfaI CTAG 4 cut(s) 582, 870, 891, 987
BfmI CTRYAG 2 cut(s) 317, 862
BfoI RGCGCY 2 cut(s) 462, 525
BglI GCCNNNNNGGC 1 cut(s) 807
BlnI CCTAGG 1 cut(s) 890
BmcAI AGTACT 1 cut(s) 874
Bme1390I CCNGG 2 cut(s) 850, 909
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 523, 971
BmrFI CCNGG 2 cut(s) 850, 909
BmsI GCATC 2 cut(s) 223, 733
BpiI GAAGAC 1 cut(s) 502
BpmI CTGGAG 1 cut(s) 713
BpuMI CCSGG 1 cut(s) 909
Bsa29I ATCGAT 2 cut(s) 528, 628
BsaAI YACGTR 1 cut(s) 778
BsaBI GATNNNNATC 1 cut(s) 1143
BsaHI GRCGYC 2 cut(s) 522, 1028
BsaI GGTCTC 1 cut(s) 763
BsaJI CCNNGG 6 cut(s) 45, 234, 670, 805, 890, 907
BsaWI WCCGGW 1 cut(s) 594
BsaXI ACNNNNNCTCC 6 cut(s) 555, 581, 585, 611, 741, 771
Bsc4I CCNNNNNNNGG 6 cut(s) 163, 455, 498, 891, 944, 945
Bse118I RCCGGY 6 cut(s) 455, 518, 539, 634, 1057, 1092
Bse1I ACTGG 3 cut(s) 193, 730, 885
Bse8I GATNNNNATC 1 cut(s) 1143
BseBI CCWGG 1 cut(s) 850
BseCI ATCGAT 2 cut(s) 528, 628
BseDI CCNNGG 6 cut(s) 45, 234, 670, 805, 890, 907
BseGI GGATG 1 cut(s) 832
BseJI GATNNNNATC 1 cut(s) 1143
BseLI CCNNNNNNNGG 6 cut(s) 163, 455, 498, 891, 944, 945
BseNI ACTGG 3 cut(s) 193, 730, 885
BseX3I CGGCCG 2 cut(s) 278, 537
BsgI GTGCAG 8 cut(s) 25, 198, 486, 534, 597, 623, 756, 1136
Bsh1236I CGCG 3 cut(s) 47, 622, 720
Bsh1285I CGRYCG 3 cut(s) 281, 532, 540
BshFI GGCC 4 cut(s) 280, 346, 539, 678
BshNI GGYRCC 1 cut(s) 521
BshVI ATCGAT 2 cut(s) 528, 628
BsiEI CGRYCG 3 cut(s) 281, 532, 540
BsiHKAI GWGCWC 2 cut(s) 552, 613
BsiWI CGTACG 1 cut(s) 533
BslI CCNNNNNNNGG 6 cut(s) 163, 455, 498, 891, 944, 945
BsmAI GTCTC 3 cut(s) 101, 229, 763
BsmI GAATGC 1 cut(s) 89
BsnI GGCC 4 cut(s) 280, 346, 539, 678
Bso31I GGTCTC 1 cut(s) 763
Bsp1286I GDGCHC 2 cut(s) 552, 613
Bsp143I GATC 5 cut(s) 385, 529, 914, 969, 1138
BspANI GGCC 4 cut(s) 280, 346, 539, 678
BspDI ATCGAT 2 cut(s) 528, 628
BspFNI CGCG 3 cut(s) 47, 622, 720
BspHI TCATGA 2 cut(s) 285, 351
BspLI GGNNCC 2 cut(s) 523, 971
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 4 cut(s) 922, 964, 977, 1146
BspT107I GGYRCC 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 763
BsrBI CCGCTC 1 cut(s) 703
BsrFI RCCGGY 6 cut(s) 455, 518, 539, 634, 1057, 1092
BsrI ACTGG 3 cut(s) 193, 730, 885
BssAI RCCGGY 6 cut(s) 455, 518, 539, 634, 1057, 1092
BssECI CCNNGG 6 cut(s) 45, 234, 670, 805, 890, 907
BssMI GATC 5 cut(s) 385, 529, 914, 969, 1138
BssNI GRCGYC 2 cut(s) 522, 1028
BssSI CACGAG 1 cut(s) 462
BssT1I CCWWGG 3 cut(s) 234, 805, 890
Bst2BI CACGAG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 850
Bst4CI ACNGT 2 cut(s) 866, 1004
BstACI GRCGYC 2 cut(s) 522, 1028
BstBAI YACGTR 1 cut(s) 778
BstC8I GCNNGC 9 cut(s) 241, 248, 520, 541, 548, 609, 636, 711, 722
BstDSI CCRYGG 1 cut(s) 45
BstF5I GGATG 1 cut(s) 832
BstFNI CGCG 3 cut(s) 47, 622, 720
BstH2I RGCGCY 2 cut(s) 462, 525
BstHHI GCGC 3 cut(s) 461, 524, 624
BstKTI GATC 5 cut(s) 388, 532, 917, 972, 1141
BstMAI GTCTC 3 cut(s) 101, 229, 763
BstMBI GATC 5 cut(s) 385, 529, 914, 969, 1138
BstMCI CGRYCG 3 cut(s) 281, 532, 540
BstMWI GCNNNNNNNGC 4 cut(s) 521, 751, 807, 1027
BstNI CCWGG 1 cut(s) 850
BstNSI RCATGY 1 cut(s) 1102
BstSCI CCNGG 2 cut(s) 848, 907
BstSFI CTRYAG 2 cut(s) 317, 862
BstUI CGCG 3 cut(s) 47, 622, 720
BstV2I GAAGAC 1 cut(s) 502
BstX2I RGATCY 2 cut(s) 969, 1138
BstYI RGATCY 2 cut(s) 969, 1138
BstZI CGGCCG 2 cut(s) 278, 537
Bsu15I ATCGAT 2 cut(s) 528, 628
BsuRI GGCC 4 cut(s) 280, 346, 539, 678
BsuTUI ATCGAT 2 cut(s) 528, 628
BtgI CCRYGG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 832
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 9 cut(s) 241, 248, 520, 541, 548, 609, 636, 711, 722
CciI TCATGA 2 cut(s) 285, 351
CfoI GCGC 3 cut(s) 461, 524, 624
Cfr10I RCCGGY 6 cut(s) 455, 518, 539, 634, 1057, 1092
Cfr13I GGNCC 1 cut(s) 398
Cfr42I CCGCGG 1 cut(s) 48
ClaI ATCGAT 2 cut(s) 528, 628
CseI GACGC 3 cut(s) 92, 776, 1036
Csp6I GTAC 5 cut(s) 76, 534, 781, 873, 1096
CviAII CATG 7 cut(s) 286, 352, 392, 402, 746, 1099, 1127
CviQI GTAC 5 cut(s) 76, 534, 781, 873, 1096
DinI GGCGCC 1 cut(s) 523
DpnI GATC 5 cut(s) 387, 531, 916, 971, 1140
DpnII GATC 5 cut(s) 385, 529, 914, 969, 1138
EaeI YGGCCR 4 cut(s) 278, 344, 537, 676
EagI CGGCCG 2 cut(s) 278, 537
EciI GGCGGA 1 cut(s) 982
Ecl136II GAGCTC 2 cut(s) 550, 611
EclXI CGGCCG 2 cut(s) 278, 537
Eco130I CCWWGG 3 cut(s) 234, 805, 890
Eco24I GRGCYC 2 cut(s) 552, 613
Eco31I GGTCTC 1 cut(s) 763
Eco47I GGWCC 1 cut(s) 398
Eco52I CGGCCG 2 cut(s) 278, 537
Eco53kI GAGCTC 2 cut(s) 550, 611
Eco57I CTGAAG 2 cut(s) 109, 1073
Eco72I CACGTG 1 cut(s) 778
EcoICRI GAGCTC 2 cut(s) 550, 611
EcoRII CCWGG 1 cut(s) 848
EcoT14I CCWWGG 3 cut(s) 234, 805, 890
EcoT38I GRGCYC 2 cut(s) 552, 613
EgeI GGCGCC 1 cut(s) 523
EheI GGCGCC 1 cut(s) 523
ErhI CCWWGG 3 cut(s) 234, 805, 890
FaeI CATG 7 cut(s) 289, 355, 395, 405, 749, 1102, 1130
FatI CATG 7 cut(s) 285, 351, 391, 401, 745, 1098, 1126
FauI CCCGC 1 cut(s) 1026
FokI GGATG 1 cut(s) 819
FriOI GRGCYC 2 cut(s) 552, 613
FspBI CTAG 4 cut(s) 582, 870, 891, 987
GlaI GCGC 3 cut(s) 460, 523, 623
GsuI CTGGAG 1 cut(s) 713
HaeII RGCGCY 2 cut(s) 462, 525
HaeIII GGCC 4 cut(s) 280, 346, 539, 678
HgaI GACGC 3 cut(s) 92, 776, 1036
HhaI GCGC 3 cut(s) 461, 524, 624
Hin1I GRCGYC 2 cut(s) 522, 1028
Hin1II CATG 7 cut(s) 289, 355, 395, 405, 749, 1102, 1130
Hin6I GCGC 3 cut(s) 459, 522, 622
HinP1I GCGC 3 cut(s) 459, 522, 622
HinfI GANTC 5 cut(s) 170, 200, 949, 1106, 1132
HphI GGTGA 5 cut(s) 380, 485, 560, 815, 1036
Hpy166II GTNNAC 1 cut(s) 781
Hpy188I TCNGA 4 cut(s) 256, 554, 589, 615
Hpy188III TCNNGA 5 cut(s) 286, 352, 655, 998, 1136
Hpy8I GTNNAC 1 cut(s) 781
Hpy99I CGWCG 1 cut(s) 770
HpyAV CCTTC 1 cut(s) 389
HpyCH4III ACNGT 2 cut(s) 866, 1004
HpyCH4IV ACGT 2 cut(s) 565, 777
HpyF10VI GCNNNNNNNGC 4 cut(s) 521, 751, 807, 1027
HpySE526I ACGT 2 cut(s) 565, 777
Hsp92I GRCGYC 2 cut(s) 522, 1028
Hsp92II CATG 7 cut(s) 289, 355, 395, 405, 749, 1102, 1130
HspAI GCGC 3 cut(s) 459, 522, 622
KasI GGCGCC 1 cut(s) 521
KroI GCCGGC 3 cut(s) 518, 539, 634
KroNI GCCGGC 3 cut(s) 520, 541, 636
KspI CCGCGG 1 cut(s) 48
Kzo9I GATC 5 cut(s) 385, 529, 914, 969, 1138
LmnI GCTCC 2 cut(s) 380, 940
LweI GCATC 2 cut(s) 223, 733
MaeI CTAG 4 cut(s) 582, 870, 891, 987
MaeII ACGT 2 cut(s) 565, 777
MaeIII GTNAC 4 cut(s) 473, 566, 998, 1024
MalI GATC 5 cut(s) 387, 531, 916, 971, 1140
MbiI CCGCTC 1 cut(s) 703
MboI GATC 5 cut(s) 385, 529, 914, 969, 1138
MboII GAAGA 3 cut(s) 507, 1058, 1133
MflI RGATCY 2 cut(s) 969, 1138
MhlI GDGCHC 2 cut(s) 552, 613
MluCI AATT 2 cut(s) 793, 1081
Mly113I GGCGCC 1 cut(s) 522
MlyI GAGTC 3 cut(s) 194, 958, 1141
MmeI TCCRAC 1 cut(s) 567
MnlI CCTC 6 cut(s) 43, 141, 149, 581, 680, 743
MroNI GCCGGC 3 cut(s) 518, 539, 634
MseI TTAA 2 cut(s) 335, 372
MslI CAYNNNNRTG 1 cut(s) 573
MspA1I CMGCKG 2 cut(s) 47, 1021
MspR9I CCNGG 2 cut(s) 850, 909
Mva1269I GAATGC 1 cut(s) 89
MvaI CCWGG 1 cut(s) 850
MvnI CGCG 3 cut(s) 47, 622, 720
MwoI GCNNNNNNNGC 4 cut(s) 521, 751, 807, 1027
NaeI GCCGGC 3 cut(s) 520, 541, 636
NarI GGCGCC 1 cut(s) 522
NciI CCSGG 1 cut(s) 909
NdeII GATC 5 cut(s) 385, 529, 914, 969, 1138
NgoMIV GCCGGC 3 cut(s) 518, 539, 634
NlaIII CATG 7 cut(s) 289, 355, 395, 405, 749, 1102, 1130
NlaIV GGNNCC 2 cut(s) 523, 971
NmeAIII GCCGAG 2 cut(s) 256, 651
NmuCI GTSAC 4 cut(s) 473, 566, 998, 1024
NspI RCATGY 1 cut(s) 1102
OliI CACNNNNGTG 1 cut(s) 573
PagI TCATGA 2 cut(s) 285, 351
PciI ACATGT 1 cut(s) 1098
PcsI WCGNNNNNNNCGW 3 cut(s) 571, 717, 774
PctI GAATGC 1 cut(s) 89
PdiI GCCGGC 3 cut(s) 520, 541, 636
PfeI GAWTC 2 cut(s) 170, 1106
Pfl23II CGTACG 1 cut(s) 533
PflMI CCANNNNNTGG 1 cut(s) 163
PfoI TCCNGGA 1 cut(s) 848
Ple19I CGATCG 1 cut(s) 532
PleI GAGTC 3 cut(s) 194, 957, 1140
PluTI GGCGCC 1 cut(s) 525
PmaCI CACGTG 1 cut(s) 778
PmlI CACGTG 1 cut(s) 778
PpsI GAGTC 3 cut(s) 194, 957, 1140
Ppu21I YACGTR 1 cut(s) 778
PscI ACATGT 1 cut(s) 1098
Psp124BI GAGCTC 2 cut(s) 552, 613
Psp6I CCWGG 1 cut(s) 848
PspCI CACGTG 1 cut(s) 778
PspGI CCWGG 1 cut(s) 848
PspLI CGTACG 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 523, 971
PspPI GGNCC 1 cut(s) 398
PsrI GAACNNNNNNTAC 2 cut(s) 845, 877
PstI CTGCAG 1 cut(s) 321
PsuI RGATCY 2 cut(s) 969, 1138
PvuI CGATCG 1 cut(s) 532
RsaI GTAC 5 cut(s) 77, 535, 782, 874, 1097
RsaNI GTAC 5 cut(s) 76, 534, 781, 873, 1096
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 2 cut(s) 552, 613
SacII CCGCGG 1 cut(s) 48
SaqAI TTAA 2 cut(s) 335, 372
Sau3AI GATC 5 cut(s) 385, 529, 914, 969, 1138
Sau96I GGNCC 1 cut(s) 398
ScaI AGTACT 1 cut(s) 874
SchI GAGTC 3 cut(s) 194, 958, 1141
ScrFI CCNGG 2 cut(s) 850, 909
SduI GDGCHC 2 cut(s) 552, 613
SfaNI GCATC 2 cut(s) 223, 733
SfcI CTRYAG 2 cut(s) 317, 862
SfoI GGCGCC 1 cut(s) 523
Sfr303I CCGCGG 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 48
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 573
Sse9I AATT 2 cut(s) 793, 1081
SspDI GGCGCC 1 cut(s) 521
SspMI CTAG 4 cut(s) 582, 870, 891, 987
SstI GAGCTC 2 cut(s) 552, 613
StyD4I CCNGG 2 cut(s) 848, 907
StyI CCWWGG 3 cut(s) 234, 805, 890
TaaI ACNGT 2 cut(s) 866, 1004
TaiI ACGT 2 cut(s) 568, 780
TaqI TCGA 3 cut(s) 528, 628, 1109
TasI AATT 2 cut(s) 793, 1081
TatI WGTACW 1 cut(s) 872
TauI GCSGC 6 cut(s) 505, 546, 641, 678, 706, 804
TfiI GAWTC 2 cut(s) 170, 1106
Tru1I TTAA 2 cut(s) 335, 372
Tru9I TTAA 2 cut(s) 335, 372
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 4 cut(s) 473, 566, 998, 1024
Tsp45I GTSAC 4 cut(s) 473, 566, 998, 1024
TspDTI ATGAA 8 cut(s) 274, 340, 368, 408, 806, 1028, 1119, 1133
TspGWI ACGGA 4 cut(s) 43, 563, 834, 915
TspRI CASTG 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 398
XceI RCATGY 1 cut(s) 1102
XmaJI CCTAGG 1 cut(s) 890
XspI CTAG 4 cut(s) 582, 870, 891, 987
ZrmI AGTACT 1 cut(s) 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.