Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010045

Physical Location & Seq

Genomic Coordinates Forward (+)

2043419 .. 2044200

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAAGACTTATGATTTCATGAACGTCAACTCTTTCTCTCCTAAGGAAAGACCCATTCGCCTCTTTGGCTTCGAGTTTGGAGCTTCTCATGAAGAATCTGAGTCCAAAGACAATTACAACGAGAACAATGAAAGCATCAAAGACGATAACAAAGAAAAAAGATTCAAGTGCCACTATTGTTTCCGGAACTTCCCTACTTCACAAGCCCTAGGCGGCCATCAAAACGCTCACAAGAGAGAACGTCAACAAACTAAACGCTTCAACCTCCATTCAAACGCAGCCGCTTTCTTCCACCGCCAACAAAACCACATTGCTGCTTCTAGGCTCTACGAGGATCGCTATAGCCTTGAAGCTGTTCAAATCAACGACGCGAGATTAGGGTTATGTCGTATGTATAACTCATCTGCGAGTTTTAATCGTGACCGTTCATCTTATTATAATAGATATATTCCTTGGTTCATCGGTGATCACCAGACTAGACCAACGTATGTCGGTGGTGGTAGCAGCAGCCATGGTCTGTTTTACGAGTCCAAGAAGAATGTACCGGACCACGTGAGTTTGGATCTACGCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005840 GO:0006355 GO:0007154 GO:0007165 GO:0008150 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009739 GO:0009740 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010033 GO:0010090 GO:0010091 GO:0010468 GO:0010476 GO:0010556 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022626 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032989 GO:0032991 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043565 GO:0044212 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071368 GO:0071370 GO:0071396 GO:0071495 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:1905958 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

191

Amino Acids

22.47

Weight (kDa)

9.22

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010045)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41940 AT3G58070 AT5G06650
fragaria_vesca	FvH4_6g21760
malus_domestica	MD12G1054000.v1.1 MD14G1052700.v1.1
prunus_persica	Prupe.7G082800_v2.0.a1 Prupe.7G082800_v2.0.a1
pyrus_communis	pycom12g04700 pycom14g04390
rosa_chinensis	RchiOBHm_Chr3g0479101
rosa_laevigata	RLG00000023607
rosa_multiflora	Rmu_sc0005295.1_g000003 Rmu_sc0005645.1_g000021
rosa_roxburghii	Rroxscaffold_6G00402720
rosa_rugosa	Rorug03G0171100 Rorug03G0304800
rosa_samantha	Rh3BG254500 Rh3CG250400 Rh3DG246600
rosa_wichuraiana	Rw3G019920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
AccII	CGCG	1 cut(s)	371
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	3 cut(s)	213, 282, 295
AclWI	GGATC	2 cut(s)	342, 570
AcoI	YGGCCR	1 cut(s)	214
AcvI	CACGTG	1 cut(s)	553
AfaI	GTAC	1 cut(s)	543
AgsI	TTSAA	5 cut(s)	166, 262, 273, 350, 359
AluBI	AGCT	2 cut(s)	83, 353
AluI	AGCT	2 cut(s)	83, 353
AlwI	GGATC	2 cut(s)	342, 570
Aor13HI	TCCGGA	1 cut(s)	183
AoxI	GGCC	1 cut(s)	214
ApeKI	GCWGC	4 cut(s)	278, 314, 504, 507
Asp700I	GAANNNNTTC	1 cut(s)	354
AspA2I	CCTAGG	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	461, 476
AvaII	GGWCC	1 cut(s)	547
AvrII	CCTAGG	1 cut(s)	208
AxyI	CCTNAGG	1 cut(s)	42
BbrPI	CACGTG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	4 cut(s)	290, 301, 516, 519
BccI	CCATC	1 cut(s)	225
BclI	TGATCA	1 cut(s)	466
BfaI	CTAG	4 cut(s)	209, 321, 477, 574
BfmI	CTRYAG	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	6 cut(s)	214, 279, 282, 315, 505, 508
BlnI	CCTAGG	1 cut(s)	208
BlsI	GCNGC	6 cut(s)	215, 280, 283, 316, 506, 509
Bme18I	GGWCC	1 cut(s)	547
BmgT120I	GGNCC	1 cut(s)	547
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	553
BsaJI	CCNNGG	3 cut(s)	208, 452, 511
BsaWI	WCCGGW	2 cut(s)	183, 544
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	309
BseAI	TCCGGA	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	208, 452, 511
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	290, 301, 516, 519
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	184, 545
BsnI	GGCC	1 cut(s)	216
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	334, 466, 562
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	3 cut(s)	213, 282, 295
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	91
BspEI	TCCGGA	1 cut(s)	183
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	2 cut(s)	18, 88
BspPI	GGATC	2 cut(s)	342, 570
BsrDI	GCAATG	1 cut(s)	309
BssECI	CCNNGG	3 cut(s)	208, 452, 511
BssMI	GATC	3 cut(s)	334, 466, 562
BssT1I	CCWWGG	3 cut(s)	208, 452, 511
Bst4CI	ACNGT	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	553
BstDEI	CTNAG	2 cut(s)	42, 99
BstDSI	CCRYGG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	371
BstKTI	GATC	3 cut(s)	337, 469, 565
BstMBI	GATC	3 cut(s)	334, 466, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	4 cut(s)	290, 301, 516, 519
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	216
BtgI	CCRYGG	1 cut(s)	511
CciI	TCATGA	2 cut(s)	18, 88
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	3 cut(s)	19, 89, 512
CviJI	RGCY	9 cut(s)	69, 83, 206, 216, 281, 325, 345, 353, 510
CviKI_1	RGCY	9 cut(s)	69, 83, 206, 216, 281, 325, 345, 353, 510
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	2 cut(s)	42, 99
DpnI	GATC	3 cut(s)	336, 468, 564
DpnII	GATC	3 cut(s)	334, 466, 562
EaeI	YGGCCR	1 cut(s)	214
Eco130I	CCWWGG	3 cut(s)	208, 452, 511
Eco47I	GGWCC	1 cut(s)	547
Eco72I	CACGTG	1 cut(s)	553
Eco81I	CCTNAGG	1 cut(s)	42
EcoT14I	CCWWGG	3 cut(s)	208, 452, 511
ErhI	CCWWGG	3 cut(s)	208, 452, 511
FaeI	CATG	3 cut(s)	22, 92, 515
FatI	CATG	3 cut(s)	18, 88, 511
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	6 cut(s)	214, 279, 282, 315, 505, 508
Fsp4HI	GCNGC	6 cut(s)	214, 279, 282, 315, 505, 508
FspBI	CTAG	4 cut(s)	209, 321, 477, 574
GluI	GCNGC	6 cut(s)	214, 279, 282, 315, 505, 508
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	184, 545
HgaI	GACGC	1 cut(s)	377
Hin1II	CATG	3 cut(s)	22, 92, 515
HincII	GTYRAC	2 cut(s)	28, 245
HindII	GTYRAC	2 cut(s)	28, 245
HinfI	GANTC	4 cut(s)	95, 101, 162, 527
HpaII	CCGG	2 cut(s)	184, 545
HphI	GGTGA	2 cut(s)	461, 476
Hpy166II	GTNNAC	2 cut(s)	28, 245
Hpy188I	TCNGA	1 cut(s)	100
Hpy188III	TCNNGA	4 cut(s)	19, 89, 184, 419
Hpy8I	GTNNAC	2 cut(s)	28, 245
Hpy99I	CGWCG	1 cut(s)	371
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	4 cut(s)	24, 241, 485, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	2 cut(s)	42, 99
HpySE526I	ACGT	4 cut(s)	24, 241, 485, 552
Hsp92II	CATG	3 cut(s)	22, 92, 515
Kpn2I	TCCGGA	1 cut(s)	183
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	3 cut(s)	334, 466, 562
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	3 cut(s)	197, 485, 558
Lsp1109I	GCAGC	4 cut(s)	290, 301, 516, 519
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	4 cut(s)	209, 321, 477, 574
MaeII	ACGT	4 cut(s)	24, 241, 485, 552
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	3 cut(s)	336, 468, 564
MboI	GATC	3 cut(s)	334, 466, 562
MboII	GAAGA	4 cut(s)	16, 104, 280, 547
MflI	RGATCY	1 cut(s)	562
MluCI	AATT	1 cut(s)	112
MlyI	GAGTC	2 cut(s)	110, 536
MnlI	CCTC	3 cut(s)	71, 275, 325
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	1 cut(s)	414
MspI	CCGG	2 cut(s)	184, 545
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	1 cut(s)	66
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	3 cut(s)	334, 466, 562
NlaIII	CATG	3 cut(s)	22, 92, 515
NmuCI	GTSAC	1 cut(s)	419
PagI	TCATGA	2 cut(s)	18, 88
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	95, 162
PkrI	GCNGC	6 cut(s)	215, 280, 283, 316, 506, 509
PleI	GAGTC	2 cut(s)	109, 535
PmaCI	CACGTG	1 cut(s)	553
PmlI	CACGTG	1 cut(s)	553
PpsI	GAGTC	2 cut(s)	109, 535
Ppu21I	YACGTR	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	438
PspCI	CACGTG	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	6 cut(s)	214, 279, 282, 315, 505, 508
Sau3AI	GATC	3 cut(s)	334, 466, 562
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	2 cut(s)	110, 536
SetI	ASST	7 cut(s)	27, 85, 244, 267, 355, 488, 555
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	547
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	3 cut(s)	213, 282, 295
SspMI	CTAG	4 cut(s)	209, 321, 477, 574
StyI	CCWWGG	3 cut(s)	208, 452, 511
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	4 cut(s)	27, 244, 488, 555
TaqI	TCGA	1 cut(s)	72
TasI	AATT	1 cut(s)	112
TauI	GCSGC	2 cut(s)	216, 284
TfiI	GAWTC	2 cut(s)	95, 162
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	4 cut(s)	278, 314, 504, 507
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	7 cut(s)	7, 17, 35, 105, 144, 417, 448
VpaK11BI	GGWCC	1 cut(s)	547
XmaJI	CCTAGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	4 cut(s)	209, 321, 477, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.