AT2G42060

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013896
Physical Location & Seq
Forward (+)
17548053 .. 17549121
1069 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42060.1

Sequence Viewer

Length: 807 bp
ATGGAGTACAAACATTTCAGCCATCCACACACTCTAAAACTCCAACAGATTCAGCCACATAAAAGCTCAGATTCTTCAGTAATCTGCTCAGGTTGTGAATCAGCCATCTCTGAATCCGAAACCGCGTATATCTGTTCAACATGTGACTTCAATCTTCATGAGCAATGTGGTAACGCAGTGCGTGGGATGCAACATCCTTCTCACGCTGGTCTCCACCACTTGACTCTAGTCCCTTACACAACTTACAGCGCTGGTACCTTCCTCTGCAGAGCCTGTGGCTGCACTGGAGGTAAAGGGTTCTCTTACTGTTGTCCTTTGTGTGACTTTGACCTTCATGTTCAATGCGCTCACCTGCCTCAGGTCTTGGTTCATGAGTCTCATCCTATGCATAGTCTTCTTCTTGTCTACAACAGTACTCCTCCTATGTCTTTTACTCAGTTTGGTTTCGGGAATCAGCTTGTTTGCAATCTTTGTAATATGACTATGGATGGTAGGTTTTGGTCTTACAACTGTTATGCTTGTAACTATCATATTCATGCTTCATGTGCTGTGAATAAGCCCAATCCAGTGGCTGCTTCTGCTGAGAACTGTGGGGCGAGTGATGAAGGAAAGACACCGACTGCTGAATCTGTTCCTGTTCAGGGTTTGGAGACTGAGCAGACGGAACAAGTAGCTGCAATAACAGAGCAAGTGGAAGATCCAGTTTTGAGGCAACAGCTTGAGCTTCAGAAGCTTCAGCTTGAGCTAGATATGAGTTCTGCTCTCGCAAACATGATTGGTTCCTTCAATCTCAGTTCTTTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

268

Amino Acids

29.36

Weight (kDa)

5.56

Isoelectric Point (pI)

47.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 6 - 56 2.8e-12 C1 domain
C1_2 PF03107 66 - 116 4.2e-09 C1 domain
C1_2 PF03107 126 - 183 5.1e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 360
Acc36I ACCTGC 1 cut(s) 360
Acc65I GGTACC 1 cut(s) 254
AccB1I GGYRCC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 405
AccII CGCG 1 cut(s) 125
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 692
AcuI CTGAAG 3 cut(s) 60, 710, 719
AfaI GTAC 3 cut(s) 8, 256, 415
AfeI AGCGCT 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 358, 641
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 4 cut(s) 138, 151, 341, 787
AluBI AGCT 8 cut(s) 66, 457, 674, 718, 724, 733, 739, 745
AluI AGCT 8 cut(s) 66, 457, 674, 718, 724, 733, 739, 745
Alw26I GTCTC 3 cut(s) 215, 381, 644
AlwI GGATC 1 cut(s) 692
AlwNI CAGNNNCTG 2 cut(s) 273, 572
Aor51HI AGCGCT 1 cut(s) 250
ApeKI GCWGC 3 cut(s) 279, 572, 674
Asp700I GAANNNNTTC 1 cut(s) 630
Asp718I GGTACC 1 cut(s) 254
AspLEI GCGC 2 cut(s) 251, 347
AsuHPI GGTGA 1 cut(s) 341
AxyI CCTNAGG 1 cut(s) 357
BanI GGYRCC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 386
BbvI GCAGC 3 cut(s) 266, 559, 661
BccI CCATC 3 cut(s) 30, 113, 482
BcoDI GTCTC 3 cut(s) 215, 381, 644
BfaI CTAG 2 cut(s) 227, 746
BfmI CTRYAG 1 cut(s) 265
BfoI RGCGCY 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 360
BisI GCNGC 3 cut(s) 280, 573, 675
BlsI GCNGC 3 cut(s) 281, 574, 676
BmcAI AGTACT 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 256, 781
BmsI GCATC 1 cut(s) 177
BoxI GACNNNNGTC 1 cut(s) 227
BpiI GAAGAC 1 cut(s) 386
BplI GAGNNNNNCTC 2 cut(s) 745, 777
BpmI CTGGAG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 88
BpuEI CTTGAG 2 cut(s) 740, 761
BsaI GGTCTC 1 cut(s) 215
Bsc4I CCNNNNNNNGG 2 cut(s) 358, 641
Bse1I ACTGG 3 cut(s) 289, 566, 701
Bse21I CCTNAGG 1 cut(s) 357
Bse3DI GCAATG 1 cut(s) 170
BseGI GGATG 5 cut(s) 22, 192, 193, 379, 493
BseLI CCNNNNNNNGG 2 cut(s) 358, 641
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 7 cut(s) 81, 102, 371, 449, 573, 645, 805
BseNI ACTGG 3 cut(s) 289, 566, 701
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 3 cut(s) 266, 559, 661
BsgI GTGCAG 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 125
BshNI GGYRCC 1 cut(s) 254
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 358, 641
BsmAI GTCTC 3 cut(s) 215, 381, 644
BsmFI GGGAC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 697
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 7 cut(s) 80, 101, 370, 448, 574, 646, 804
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 2 cut(s) 157, 370
BspLI GGNNCC 2 cut(s) 256, 781
BspMAI CTGCAG 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 360
BspPI GGATC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 170
BsrI ACTGG 3 cut(s) 289, 566, 701
BssMI GATC 1 cut(s) 697
Bst4CI ACNGT 4 cut(s) 308, 413, 512, 590
BstDEI CTNAG 7 cut(s) 67, 88, 357, 435, 582, 654, 791
BstENI CCTNNNNNAGG 1 cut(s) 356
BstF5I GGATG 5 cut(s) 22, 192, 193, 379, 493
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 2 cut(s) 251, 347
BstKTI GATC 1 cut(s) 700
BstMAI GTCTC 3 cut(s) 215, 381, 644
BstMBI GATC 1 cut(s) 697
BstMWI GCNNNNNNNGC 4 cut(s) 187, 545, 578, 730
BstNSI RCATGY 1 cut(s) 144
BstPAI GACNNNNGTC 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 265
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 266, 559, 661
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 697
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 1 cut(s) 697
Bsu36I CCTNAGG 1 cut(s) 357
BtsCI GGATG 5 cut(s) 22, 192, 193, 379, 493
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 183, 282, 573
BveI ACCTGC 1 cut(s) 360
CaiI CAGNNNCTG 2 cut(s) 273, 572
CciI TCATGA 2 cut(s) 157, 370
CfoI GCGC 2 cut(s) 251, 347
Csp6I GTAC 3 cut(s) 7, 255, 414
CviAII CATG 7 cut(s) 141, 158, 335, 371, 536, 543, 772
CviQI GTAC 3 cut(s) 7, 255, 414
DdeI CTNAG 7 cut(s) 67, 88, 357, 435, 582, 654, 791
DpnI GATC 1 cut(s) 699
DpnII GATC 1 cut(s) 697
Eco31I GGTCTC 1 cut(s) 215
Eco47III AGCGCT 1 cut(s) 250
Eco57I CTGAAG 3 cut(s) 60, 710, 719
Eco81I CCTNAGG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 390
FaeI CATG 7 cut(s) 144, 161, 338, 374, 539, 546, 775
FaqI GGGAC 1 cut(s) 215
FatI CATG 7 cut(s) 140, 157, 334, 370, 535, 542, 771
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 3 cut(s) 280, 573, 675
FokI GGATG 5 cut(s) 9, 180, 199, 366, 500
Fsp4HI GCNGC 3 cut(s) 280, 573, 675
FspBI CTAG 2 cut(s) 227, 746
GlaI GCGC 2 cut(s) 250, 346
GluI GCNGC 3 cut(s) 280, 573, 675
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 1 cut(s) 252
HhaI GCGC 2 cut(s) 251, 347
Hin1II CATG 7 cut(s) 144, 161, 338, 374, 539, 546, 775
Hin6I GCGC 2 cut(s) 249, 345
HinP1I GCGC 2 cut(s) 249, 345
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 8 cut(s) 49, 71, 98, 113, 223, 374, 451, 626
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 406
Hpy188I TCNGA 4 cut(s) 70, 112, 118, 729
Hpy188III TCNNGA 3 cut(s) 158, 371, 448
Hpy8I GTNNAC 1 cut(s) 406
HpyAV CCTTC 5 cut(s) 207, 268, 341, 599, 793
HpyCH4III ACNGT 4 cut(s) 308, 413, 512, 590
HpyCH4V TGCA 6 cut(s) 190, 267, 282, 388, 465, 677
HpyF10VI GCNNNNNNNGC 4 cut(s) 187, 545, 578, 730
HpyF3I CTNAG 7 cut(s) 67, 88, 357, 435, 582, 654, 791
Hsp92II CATG 7 cut(s) 144, 161, 338, 374, 539, 546, 775
HspAI GCGC 2 cut(s) 249, 345
KpnI GGTACC 1 cut(s) 258
Kzo9I GATC 1 cut(s) 697
Lsp1109I GCAGC 3 cut(s) 266, 559, 661
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 227, 746
MaeIII GTNAC 4 cut(s) 143, 170, 320, 521
MalI GATC 1 cut(s) 699
MboI GATC 1 cut(s) 697
MboII GAAGA 5 cut(s) 66, 146, 386, 389, 707
MflI RGATCY 1 cut(s) 697
MlyI GAGTC 2 cut(s) 217, 383
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 5 cut(s) 272, 281, 366, 429, 702
Mph1103I ATGCAT 1 cut(s) 390
MroXI GAANNNNTTC 1 cut(s) 630
MslI CAYNNNNRTG 1 cut(s) 534
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 4 cut(s) 187, 545, 578, 730
NdeII GATC 1 cut(s) 697
NlaIII CATG 7 cut(s) 144, 161, 338, 374, 539, 546, 775
NlaIV GGNNCC 2 cut(s) 256, 781
NmuCI GTSAC 2 cut(s) 143, 320
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 144
PagI TCATGA 2 cut(s) 157, 370
PaqCI CACCTGC 1 cut(s) 360
PciI ACATGT 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 6 cut(s) 49, 71, 98, 113, 451, 626
PkrI GCNGC 3 cut(s) 281, 574, 676
PleI GAGTC 2 cut(s) 217, 382
PpsI GAGTC 2 cut(s) 217, 382
PscI ACATGT 1 cut(s) 140
PshAI GACNNNNGTC 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 256, 781
PstI CTGCAG 1 cut(s) 269
PstNI CAGNNNCTG 2 cut(s) 273, 572
PsuI RGATCY 1 cut(s) 697
RsaI GTAC 3 cut(s) 8, 256, 415
RsaNI GTAC 3 cut(s) 7, 255, 414
RseI CAYNNNNRTG 1 cut(s) 534
SatI GCNGC 3 cut(s) 280, 573, 675
Sau3AI GATC 1 cut(s) 697
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 2 cut(s) 217, 383
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 719, 740
SmoI CTYRAG 2 cut(s) 719, 740
SsiI CCGC 1 cut(s) 123
SspMI CTAG 2 cut(s) 227, 746
TaaI ACNGT 4 cut(s) 308, 413, 512, 590
TatI WGTACW 2 cut(s) 6, 413
TfiI GAWTC 6 cut(s) 49, 71, 98, 113, 451, 626
TscAI CASTG 3 cut(s) 183, 289, 573
TseFI GTSAC 2 cut(s) 143, 320
TseI GCWGC 3 cut(s) 279, 572, 674
Tsp45I GTSAC 2 cut(s) 143, 320
TspDTI ATGAA 6 cut(s) 146, 323, 359, 524, 531, 618
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 3 cut(s) 183, 289, 573
XagI CCTNNNNNAGG 1 cut(s) 356
XceI RCATGY 1 cut(s) 144
XmiI GTMKAC 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 227, 746
ZrmI AGTACT 1 cut(s) 415
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.