Rh3BG259400

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013896
Physical Location & Seq
Reverse (-)
25145746 .. 25147582
1837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG259400.1

Sequence Viewer

Length: 1071 bp
ATGGAAAGAGTGGAAGAGAAGCTCAACTTTTACCACTTTAGCCATGAACATTCACTAGAGCAAACCAATTCACCTCCCAAGCAAAACAATACATGTGCAGGCTGCAATCTGATGATACTCCCCGGTAAGGACTACTACAGCTGCAGAAAATGCCCATTTTTCCTAAACCAAGTTTGCTACAATATGCCTCGAAAAACTCGCCACCCGGCACATCCAAACCACTATTTGAATCTCCATGCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCTTGTGGAAAGCATGTTGCCGGCTTTTACTATCATTGTGCGGAATGTGGCCTCTACTACCATAGCTTGTGCTCCATCCTGCCTTTCTCTATTGCAACTTCATCACACCCTCACGCGTTAAAATTGTCATTTTTGCCCCCCTGCCATTTGTGCTGCGATATCTGCAGTGAGCCTGCTTATGATGGATGGCTCTATAGGTGTCACATATGTGAGTTTGATGCTCATCTTTCTTGTGGCATTTCTGATCAAAAACTTCTTGACAGTTCTCAAAGTTACAATATTGAAGGCAAGGAGCTATTGCAGTTGGTGAGGCATGGATTTGTAAGAAGTGGATCACATCAGATTACAGAAGCAAACATACCCGATACCATCGCTCAGAACCCAAGACCACAATTTTTGTATCGAGATTCATCAGCTCCTGTCTCTGAAGACACGACTCTGACTCCGAGTAATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCTATGCTCAGAAAAACGAAGGGAGGAAAGAAAGTGGTCATCAAGGTCCAAATGGTACTGCTGAATTAGTCCAAGGAACATTTCAGTCCAGCAAGGTCAGCAATAAAGTAGGACCAGAAAACAAAATGAATGAAGCATTCTTGACTCGAAGTGACACACTTACCAGGAAGGAATTAGGCCCAGAGAAGAAGAGAAAACCAAGTGAAACCATGGGGAGGTCAAACATCGGAAATCAGAGTACTAAATCGGATACTGTAAGTCAATTTAAATACCAATTAAACTTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

356

Amino Acids

40.0

Weight (kDa)

8.23

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 13 - 59 1.7e-07 C1 domain
C1_2 PF03107 70 - 115 3.4e-08 C1 domain
C1_2 PF03107 126 - 169 3.8e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 389
AciI CCGC 1 cut(s) 314
AclWI GGATC 1 cut(s) 613
AcoI YGGCCR 1 cut(s) 759
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 2 cut(s) 838, 1021
AfiI CCNNNNNNNGG 2 cut(s) 127, 996
AflIII ACRYGT 2 cut(s) 92, 387
AgsI TTSAA 3 cut(s) 229, 249, 557
AjnI CCWGG 1 cut(s) 944
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 6 cut(s) 22, 141, 260, 339, 568, 689
AluI AGCT 6 cut(s) 22, 141, 260, 339, 568, 689
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 1 cut(s) 613
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 3 cut(s) 322, 759, 958
ApeKI GCWGC 3 cut(s) 102, 141, 426
AspS9I GGNCC 3 cut(s) 827, 893, 959
AsuC2I CCSGG 2 cut(s) 123, 206
AsuHPI GGTGA 4 cut(s) 63, 234, 592, 771
AvaII GGWCC 2 cut(s) 827, 893
BalI TGGCCA 1 cut(s) 761
BarI GAAGNNNNNNTAC 2 cut(s) 615, 647
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 3 cut(s) 89, 128, 413
BccI CCATC 4 cut(s) 356, 449, 453, 650
BciT130I CCWGG 1 cut(s) 946
BciVI GTATCC 1 cut(s) 1024
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 2 cut(s) 123, 206
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 4 cut(s) 136, 142, 436, 466
BfuI GTATCC 1 cut(s) 1024
BisI GCNGC 3 cut(s) 103, 142, 427
BlsI GCNGC 3 cut(s) 104, 143, 428
BmcAI AGTACT 1 cut(s) 1021
Bme1390I CCNGG 3 cut(s) 123, 206, 946
Bme18I GGWCC 2 cut(s) 827, 893
BmgT120I GGNCC 3 cut(s) 827, 893, 959
BmrFI CCNGG 3 cut(s) 123, 206, 946
BmsI GCATC 2 cut(s) 481, 727
BpiI GAAGAC 1 cut(s) 708
BpuMI CCSGG 2 cut(s) 123, 206
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 121, 853, 990
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 996
Bse118I RCCGGY 1 cut(s) 293
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 1 cut(s) 946
BseDI CCNNGG 3 cut(s) 121, 853, 990
BseGI GGATG 3 cut(s) 211, 348, 464
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 127, 996
BseMII CTCAG 2 cut(s) 662, 803
BseXI GCAGC 3 cut(s) 89, 128, 413
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 389
BshFI GGCC 3 cut(s) 324, 761, 960
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 3 cut(s) 123, 206, 294
BslI CCNNNNNNNGG 2 cut(s) 127, 996
BsmAI GTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 3 cut(s) 324, 761, 960
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 2 cut(s) 517, 605
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 1 cut(s) 314
BspANI GGCC 3 cut(s) 324, 761, 960
BspCNI CTCAG 2 cut(s) 661, 802
BspFNI CGCG 1 cut(s) 389
BspMAI CTGCAG 2 cut(s) 146, 440
BspPI GGATC 1 cut(s) 613
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 121, 853, 990
BssMI GATC 2 cut(s) 517, 605
BssT1I CCWWGG 2 cut(s) 853, 990
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 2 cut(s) 536, 1036
Bst6I CTCTTC 2 cut(s) 9, 965
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 100, 295, 447
BstDEI CTNAG 2 cut(s) 648, 789
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 3 cut(s) 211, 348, 464
BstFNI CGCG 1 cut(s) 389
BstKTI GATC 2 cut(s) 520, 608
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 2 cut(s) 517, 605
BstMWI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
BstNI CCWGG 1 cut(s) 946
BstNSI RCATGY 2 cut(s) 96, 290
BstSCI CCNGG 3 cut(s) 121, 204, 944
BstSFI CTRYAG 4 cut(s) 136, 142, 436, 466
BstUI CGCG 1 cut(s) 389
BstV1I GCAGC 3 cut(s) 89, 128, 413
BstV2I GAAGAC 1 cut(s) 708
BstXI CCANNNNNNTGG 1 cut(s) 757
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 324, 761, 960
BtgI CCRYGG 1 cut(s) 990
BtgZI GCGATG 1 cut(s) 628
BtsCI GGATG 3 cut(s) 211, 348, 464
BtsI GCAGTG 1 cut(s) 445
BtsIMutI CAGTG 1 cut(s) 445
Cac8I GCNNGC 3 cut(s) 100, 295, 447
CaiI CAGNNNCTG 1 cut(s) 692
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 827, 893, 959
Csp6I GTAC 2 cut(s) 837, 1020
CspCI CAANNNNNGTGG 4 cut(s) 259, 294, 651, 686
CviAII CATG 6 cut(s) 44, 93, 236, 287, 587, 991
CviQI GTAC 2 cut(s) 837, 1020
DdeI CTNAG 2 cut(s) 648, 789
DpnI GATC 2 cut(s) 519, 607
DpnII GATC 2 cut(s) 517, 605
DraI TTTAAA 1 cut(s) 1048
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 2 cut(s) 9, 965
EarI CTCTTC 2 cut(s) 9, 965
Eco130I CCWWGG 2 cut(s) 853, 990
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 827, 893
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 944
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 853, 990
EcoT22I ATGCAT 1 cut(s) 742
ErhI CCWWGG 2 cut(s) 853, 990
FaeI CATG 6 cut(s) 47, 96, 239, 290, 590, 994
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 6 cut(s) 43, 92, 235, 286, 586, 990
FauNDI CATATG 1 cut(s) 479
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 3 cut(s) 103, 142, 427
FokI GGATG 3 cut(s) 198, 335, 471
Fsp4HI GCNGC 3 cut(s) 103, 142, 427
FspBI CTAG 1 cut(s) 56
GluI GCNGC 3 cut(s) 103, 142, 427
HaeIII GGCC 3 cut(s) 324, 761, 960
HapII CCGG 3 cut(s) 123, 206, 294
Hin1II CATG 6 cut(s) 47, 96, 239, 290, 590, 994
HinfI GANTC 5 cut(s) 229, 680, 709, 715, 925
HpaII CCGG 3 cut(s) 123, 206, 294
HphI GGTGA 4 cut(s) 63, 234, 592, 771
Hpy188III TCNNGA 3 cut(s) 530, 677, 922
HpyAV CCTTC 4 cut(s) 255, 551, 794, 943
HpyCH4III ACNGT 2 cut(s) 536, 1036
HpyCH4V TGCA 8 cut(s) 98, 105, 144, 270, 368, 438, 574, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
HpyF3I CTNAG 2 cut(s) 648, 789
Hsp92II CATG 6 cut(s) 47, 96, 239, 290, 590, 994
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 2 cut(s) 517, 605
LmnI GCTCC 4 cut(s) 257, 350, 565, 694
Lsp1109I GCAGC 3 cut(s) 89, 128, 413
LweI GCATC 2 cut(s) 481, 727
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 3 cut(s) 473, 545, 932
MalI GATC 2 cut(s) 519, 607
MboI GATC 2 cut(s) 517, 605
MboII GAAGA 4 cut(s) 26, 713, 979, 982
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 761
MluI ACGCGT 1 cut(s) 387
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 3 cut(s) 703, 709, 919
MnlI CCTC 7 cut(s) 84, 198, 335, 393, 576, 798, 990
Mox20I TGGCCA 1 cut(s) 761
Mph1103I ATGCAT 1 cut(s) 742
MroNI GCCGGC 1 cut(s) 293
MscI TGGCCA 1 cut(s) 761
MseI TTAA 3 cut(s) 392, 1047, 1058
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 3 cut(s) 123, 206, 294
MspR9I CCNGG 3 cut(s) 123, 206, 946
Mva1269I GAATGC 1 cut(s) 917
MvaI CCWGG 1 cut(s) 946
MvnI CGCG 1 cut(s) 389
MwoI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
NaeI GCCGGC 1 cut(s) 295
NciI CCSGG 2 cut(s) 123, 206
NcoI CCATGG 1 cut(s) 990
NdeI CATATG 1 cut(s) 479
NdeII GATC 2 cut(s) 517, 605
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 6 cut(s) 47, 96, 239, 290, 590, 994
NmuCI GTSAC 2 cut(s) 473, 932
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 2 cut(s) 96, 290
OliI CACNNNNGTG 1 cut(s) 480
PciI ACATGT 1 cut(s) 92
PctI GAATGC 1 cut(s) 917
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 229, 680
PkrI GCNGC 3 cut(s) 104, 143, 428
PleI GAGTC 3 cut(s) 703, 709, 919
PpsI GAGTC 3 cut(s) 703, 709, 919
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 944
PspPI GGNCC 3 cut(s) 827, 893, 959
PstI CTGCAG 2 cut(s) 146, 440
PstNI CAGNNNCTG 1 cut(s) 692
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 2 cut(s) 838, 1021
RsaNI GTAC 2 cut(s) 837, 1020
RseI CAYNNNNRTG 1 cut(s) 480
SaqAI TTAA 3 cut(s) 392, 1047, 1058
SatI GCNGC 3 cut(s) 103, 142, 427
Sau3AI GATC 2 cut(s) 517, 605
Sau96I GGNCC 3 cut(s) 827, 893, 959
ScaI AGTACT 1 cut(s) 1021
SchI GAGTC 3 cut(s) 703, 709, 919
ScrFI CCNGG 3 cut(s) 123, 206, 946
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 2 cut(s) 481, 727
SfcI CTRYAG 4 cut(s) 136, 142, 436, 466
SinI GGWCC 2 cut(s) 827, 893
SmiI ATTTAAAT 1 cut(s) 1048
SmiMI CAYNNNNRTG 1 cut(s) 480
SsiI CCGC 1 cut(s) 314
SspI AATATT 1 cut(s) 553
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 121, 204, 944
StyI CCWWGG 2 cut(s) 853, 990
SwaI ATTTAAAT 1 cut(s) 1048
TaaI ACNGT 2 cut(s) 536, 1036
TaqI TCGA 3 cut(s) 190, 676, 928
TatI WGTACW 1 cut(s) 1019
TfiI GAWTC 2 cut(s) 229, 680
Tru1I TTAA 3 cut(s) 392, 1047, 1058
Tru9I TTAA 3 cut(s) 392, 1047, 1058
TscAI CASTG 1 cut(s) 445
TseFI GTSAC 2 cut(s) 473, 932
TseI GCWGC 3 cut(s) 102, 141, 426
Tsp45I GTSAC 2 cut(s) 473, 932
TspDTI ATGAA 5 cut(s) 60, 363, 672, 923, 927
TspRI CASTG 1 cut(s) 445
VpaK11BI GGWCC 2 cut(s) 827, 893
XceI RCATGY 2 cut(s) 96, 290
XspI CTAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 1021
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.