Rh3DG250800

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0013896
Physical Location & Seq
Reverse (-)
24702825 .. 24709793
6969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG250800.1

Sequence Viewer

Length: 558 bp
ATGCCCGATACCATCGCTCTGAACCCAAGACCACAATTTTTGTATCGAGATTCATCAGCTCCTGTCTCTGAAGACACGACTCTGACTCCGAGTAATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCTATGCTCAGAAAAACGAAGGGAGGAAAGAAAGTGGTCATCAAGGTCCAAATGGTACTGCTGAATTAGTCCAAGGAACATTTCAGTCCAGCAAGGTCAGCAATAAAGTAGGACCAGAAAACAAAATGAATGAAGCATTCTTGACTCGAAGTGACACACTTACCAAGAAGGAATTAGGCCCAGAGAAGAAGAGAAAACCAAGTGAAACCATGGGGAGGTCAAACATCGGAAATCAGAGTACTAAATCGGATACTGACAACACGATGAAGGAAACCTCAGCCGCCGCGGTCCTCAGGCCAGCCAGAAAAGATAAAGGAGAAAATCCCCGCTCTCCTAGCCGCAGATGCATCACCAATAGCCATGATGAAGAAATTTTTCAAGGACAGAAGTCGTCAAGTAAACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

185

Amino Acids

20.36

Weight (kDa)

9.28

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 480
AccII CGCG 1 cut(s) 437
AciI CCGC 5 cut(s) 432, 435, 437, 478, 490
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 2 cut(s) 208, 391
AfiI CCNNNNNNNGG 1 cut(s) 366
AgsI TTSAA 1 cut(s) 530
AjuI GAANNNNNNNTTGG 2 cut(s) 216, 248
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 70
AlwNI CAGNNNCTG 1 cut(s) 62
AoxI GGCC 3 cut(s) 129, 328, 446
ApoI RAATTY 1 cut(s) 522
Asp700I GAANNNNTTC 1 cut(s) 525
AspS9I GGNCC 4 cut(s) 197, 263, 329, 439
AsuHPI GGTGA 2 cut(s) 141, 493
AvaII GGWCC 3 cut(s) 197, 263, 439
AxyI CCTNAGG 1 cut(s) 443
BalI TGGCCA 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 78
BbvCI CCTCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 20
BciVI GTATCC 1 cut(s) 394
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 486
BfuI GTATCC 1 cut(s) 394
BisI GCNGC 3 cut(s) 432, 435, 490
BlsI GCNGC 3 cut(s) 433, 436, 491
BmcAI AGTACT 1 cut(s) 391
Bme18I GGWCC 3 cut(s) 197, 263, 439
BmgT120I GGNCC 4 cut(s) 197, 263, 329, 439
BmsI GCATC 3 cut(s) 97, 485, 507
BoxI GACNNNNGTC 1 cut(s) 538
BpiI GAAGAC 1 cut(s) 78
Bpu10I CCTNAGC 1 cut(s) 427
BsaJI CCNNGG 3 cut(s) 223, 360, 435
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse21I CCTNAGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 223, 360, 435
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 3 cut(s) 173, 441, 457
Bsh1236I CGCG 1 cut(s) 437
BshFI GGCC 3 cut(s) 131, 330, 448
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 287
BsnI GGCC 3 cut(s) 131, 330, 448
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 5 cut(s) 432, 435, 437, 478, 490
BspANI GGCC 3 cut(s) 131, 330, 448
BspCNI CTCAG 3 cut(s) 172, 440, 456
BspFNI CGCG 1 cut(s) 437
BsrBI CCGCTC 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 223, 360, 435
BssT1I CCWWGG 2 cut(s) 223, 360
Bst4CI ACNGT 1 cut(s) 555
Bst6I CTCTTC 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 3 cut(s) 159, 427, 443
BstDSI CCRYGG 2 cut(s) 360, 435
BstFNI CGCG 1 cut(s) 437
BstMAI GTCTC 1 cut(s) 70
BstMWI GCNNNNNNNGC 3 cut(s) 249, 486, 495
BstPAI GACNNNNGTC 1 cut(s) 538
BstUI CGCG 1 cut(s) 437
BstV2I GAAGAC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 443
BsuI GTATCC 1 cut(s) 394
BsuRI GGCC 3 cut(s) 131, 330, 448
BtgI CCRYGG 2 cut(s) 360, 435
Cac8I GCNNGC 1 cut(s) 450
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 4 cut(s) 197, 263, 329, 439
Cfr42I CCGCGG 1 cut(s) 438
Csp6I GTAC 2 cut(s) 207, 390
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 2 cut(s) 361, 512
CviJI RGCY 8 cut(s) 59, 131, 330, 431, 448, 452, 489, 510
CviKI_1 RGCY 8 cut(s) 59, 131, 330, 431, 448, 452, 489, 510
CviQI GTAC 2 cut(s) 207, 390
DdeI CTNAG 3 cut(s) 159, 427, 443
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 2 cut(s) 223, 360
Eco47I GGWCC 3 cut(s) 197, 263, 439
Eco57I CTGAAG 1 cut(s) 90
Eco81I CCTNAGG 1 cut(s) 443
EcoT14I CCWWGG 2 cut(s) 223, 360
EcoT22I ATGCAT 2 cut(s) 112, 500
ErhI CCWWGG 2 cut(s) 223, 360
FaeI CATG 2 cut(s) 364, 515
FaiI YATR 5 cut(s) 112, 122, 156, 362, 513
FatI CATG 2 cut(s) 360, 511
FauI CCCGC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 432, 435, 490
Fsp4HI GCNGC 3 cut(s) 432, 435, 490
FspBI CTAG 1 cut(s) 486
GluI GCNGC 3 cut(s) 432, 435, 490
HaeIII GGCC 3 cut(s) 131, 330, 448
Hin1II CATG 2 cut(s) 364, 515
HinfI GANTC 4 cut(s) 50, 79, 85, 295
HphI GGTGA 2 cut(s) 141, 493
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 8 cut(s) 21, 70, 84, 90, 162, 380, 387, 400
Hpy188III TCNNGA 2 cut(s) 47, 292
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 3 cut(s) 164, 313, 412
HpyCH4III ACNGT 1 cut(s) 555
HpyCH4V TGCA 2 cut(s) 110, 498
HpyF10VI GCNNNNNNNGC 3 cut(s) 249, 486, 495
HpyF3I CTNAG 3 cut(s) 159, 427, 443
Hsp92II CATG 2 cut(s) 364, 515
KspI CCGCGG 1 cut(s) 438
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 7 cut(s) 75, 253, 279, 345, 430, 462, 466
LweI GCATC 3 cut(s) 97, 485, 507
MaeI CTAG 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 302
MbiI CCGCTC 1 cut(s) 480
MboII GAAGA 4 cut(s) 83, 349, 352, 530
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 6 cut(s) 35, 98, 145, 215, 323, 522
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 3 cut(s) 73, 79, 289
MnlI CCTC 4 cut(s) 168, 360, 436, 452
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 2 cut(s) 112, 500
MroXI GAANNNNTTC 1 cut(s) 525
MscI TGGCCA 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 437
Mva1269I GAATGC 1 cut(s) 287
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 3 cut(s) 249, 486, 495
NcoI CCATGG 1 cut(s) 360
NlaIII CATG 2 cut(s) 364, 515
NmuCI GTSAC 1 cut(s) 302
NsiI ATGCAT 2 cut(s) 112, 500
PctI GAATGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 433, 436, 491
PleI GAGTC 3 cut(s) 73, 79, 289
PpsI GAGTC 3 cut(s) 73, 79, 289
PshAI GACNNNNGTC 1 cut(s) 538
PspPI GGNCC 4 cut(s) 197, 263, 329, 439
PstNI CAGNNNCTG 1 cut(s) 62
RsaI GTAC 2 cut(s) 208, 391
RsaNI GTAC 2 cut(s) 207, 390
SacII CCGCGG 1 cut(s) 438
SatI GCNGC 3 cut(s) 432, 435, 490
Sau96I GGNCC 4 cut(s) 197, 263, 329, 439
ScaI AGTACT 1 cut(s) 391
SchI GAGTC 3 cut(s) 73, 79, 289
SetI ASST 5 cut(s) 61, 199, 249, 371, 428
SfaNI GCATC 3 cut(s) 97, 485, 507
Sfr303I CCGCGG 1 cut(s) 438
SgrBI CCGCGG 1 cut(s) 438
SinI GGWCC 3 cut(s) 197, 263, 439
Sse9I AATT 6 cut(s) 35, 98, 145, 215, 323, 522
SsiI CCGC 5 cut(s) 432, 435, 437, 478, 490
SspMI CTAG 1 cut(s) 486
StyI CCWWGG 2 cut(s) 223, 360
TaaI ACNGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 46, 298
TasI AATT 6 cut(s) 35, 98, 145, 215, 323, 522
TatI WGTACW 1 cut(s) 389
TauI GCSGC 3 cut(s) 434, 437, 492
TfiI GAWTC 1 cut(s) 50
TseFI GTSAC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 302
TspDTI ATGAA 5 cut(s) 42, 293, 297, 431, 531
VpaK11BI GGWCC 3 cut(s) 197, 263, 439
XapI RAATTY 1 cut(s) 522
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 391
Zsp2I ATGCAT 2 cut(s) 112, 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.