Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0013896

Physical Location & Seq

Genomic Coordinates Reverse (-)

24709954 .. 24710427

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG250900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAAGAGTGGAAGAGAAGCTCAACTTTCACCACTTTAGCCATGAACATTCACTAGAGCAAACCAATTCACCTCTCAAGCAAAACAATACATGTGCAGGCTGCAAGCTGATGATACTCCCCGGTAAGGACTACTACAGCTGCAGAAAATGCCCATTTTTCCTACACCAAATTTGCTACAATATGCCCCGAAAAACTCGCCACCCGGCACATCCAAACCACTATTTGAATCTCCATGCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCTTGTGGAAAGCATGTTGCCGGCTTTTACTATCATTGCGCGGAATGTGGCGTCTACTACCATAGCTTGTGCTCCATCCTGCCTTTCTCTATTGCAACTTCATCACACCCTCACGCGTTGAAATTGTCATTTTTGCCCCCCTGCGATTTGTGCTGCGATATCTGCAGCGAGCCTGCTTATGATGCATGGATGGATCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C1_2

Protein Analysis

157

Amino Acids

17.86

Weight (kDa)

7.93

Isoelectric Point (pI)

54.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C1_2	PF03107	13 - 59	1.6e-08	C1 domain
C1_2	PF03107	70 - 115	5.1e-09	C1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42060
fragaria_vesca	FvH4_6g05691 FvH4_6g22090
malus_domestica	MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica	Prupe.7G078900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0479421
rosa_laevigata	RLG00000023576
rosa_multiflora	Rmu_sc0000107.1_g000006
rosa_roxburghii	Rroxscaffold_6G00402290
rosa_rugosa	Rorug03G0175200
rosa_samantha	Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana	Rw3G020200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	2 cut(s)	314, 389
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	171
AcyI	GRCGYC	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	127
AflIII	ACRYGT	2 cut(s)	92, 387
AgsI	TTSAA	3 cut(s)	229, 249, 394
AluBI	AGCT	5 cut(s)	22, 109, 141, 260, 339
AluI	AGCT	5 cut(s)	22, 109, 141, 260, 339
Alw21I	GWGCWC	1 cut(s)	347
ApeKI	GCWGC	4 cut(s)	102, 141, 426, 438
ApoI	RAATTY	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	123, 206
AsuHPI	GGTGA	3 cut(s)	23, 63, 234
Bbv12I	GWGCWC	1 cut(s)	347
BbvI	GCAGC	4 cut(s)	89, 128, 413, 450
BccI	CCATC	2 cut(s)	356, 457
BcnI	CCSGG	2 cut(s)	123, 206
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	4 cut(s)	136, 142, 436, 470
BisI	GCNGC	4 cut(s)	103, 142, 427, 439
BlsI	GCNGC	4 cut(s)	104, 143, 428, 440
Bme1390I	CCNGG	2 cut(s)	123, 206
BmrFI	CCNGG	2 cut(s)	123, 206
BmsI	GCATC	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	123, 206
BsaHI	GRCGYC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	121
BseGI	GGATG	3 cut(s)	211, 348, 468
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	307
BseXI	GCAGC	4 cut(s)	89, 128, 413, 450
BsgI	GTGCAG	1 cut(s)	117
Bsh1236I	CGCG	2 cut(s)	314, 389
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	123, 206, 294
BslI	CCNNNNNNNGG	1 cut(s)	127
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	314
BspFNI	CGCG	2 cut(s)	314, 389
BspMAI	CTGCAG	2 cut(s)	146, 440
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	121
BssMI	GATC	1 cut(s)	466
BssNI	GRCGYC	1 cut(s)	324
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	324
BstAPI	GCANNNNNTGC	1 cut(s)	150
BstC8I	GCNNGC	5 cut(s)	100, 107, 295, 443, 447
BstF5I	GGATG	3 cut(s)	211, 348, 468
BstFNI	CGCG	2 cut(s)	314, 389
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	4 cut(s)	150, 423, 435, 455
BstNSI	RCATGY	2 cut(s)	96, 290
BstSCI	CCNGG	2 cut(s)	121, 204
BstSFI	CTRYAG	4 cut(s)	136, 142, 436, 470
BstUI	CGCG	2 cut(s)	314, 389
BstV1I	GCAGC	4 cut(s)	89, 128, 413, 450
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BtsCI	GGATG	3 cut(s)	211, 348, 468
Cac8I	GCNNGC	5 cut(s)	100, 107, 295, 443, 447
CfoI	GCGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	293
CseI	GACGC	1 cut(s)	313
CspCI	CAANNNNNGTGG	2 cut(s)	259, 294
CviAII	CATG	5 cut(s)	44, 93, 236, 287, 459
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco32I	GATATC	1 cut(s)	433
EcoRV	GATATC	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	5 cut(s)	47, 96, 239, 290, 462
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FatI	CATG	5 cut(s)	43, 92, 235, 286, 458
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	103, 142, 427, 439
FokI	GGATG	2 cut(s)	198, 335
Fsp4HI	GCNGC	4 cut(s)	103, 142, 427, 439
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	4 cut(s)	103, 142, 427, 439
HapII	CCGG	3 cut(s)	123, 206, 294
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	5 cut(s)	47, 96, 239, 290, 462
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	3 cut(s)	123, 206, 294
HphI	GGTGA	3 cut(s)	23, 63, 234
Hpy166II	GTNNAC	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	7 cut(s)	98, 105, 144, 270, 368, 438, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	150, 423, 435, 455
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	47, 96, 239, 290, 462
HspAI	GCGC	1 cut(s)	312
KroI	GCCGGC	1 cut(s)	293
KroNI	GCCGGC	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	2 cut(s)	257, 350
LpnPI	CCDG	7 cut(s)	84, 136, 219, 307, 365, 427, 459
Lsp1109I	GCAGC	4 cut(s)	89, 128, 413, 450
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	56
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	1 cut(s)	26
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	4 cut(s)	67, 171, 265, 395
MluI	ACGCGT	1 cut(s)	387
MnlI	CCTC	2 cut(s)	84, 393
Mph1103I	ATGCAT	1 cut(s)	460
MroNI	GCCGGC	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	3 cut(s)	123, 206, 294
MspR9I	CCNGG	2 cut(s)	123, 206
MvnI	CGCG	2 cut(s)	314, 389
MwoI	GCNNNNNNNGC	4 cut(s)	150, 423, 435, 455
NaeI	GCCGGC	1 cut(s)	295
NciI	CCSGG	2 cut(s)	123, 206
NdeII	GATC	1 cut(s)	466
NgoMIV	GCCGGC	1 cut(s)	293
NlaIII	CATG	5 cut(s)	47, 96, 239, 290, 462
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	2 cut(s)	96, 290
PciI	ACATGT	1 cut(s)	92
PdiI	GCCGGC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	104, 143, 428, 440
PscI	ACATGT	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	146, 440
PsuI	RGATCY	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	141
SatI	GCNGC	4 cut(s)	103, 142, 427, 439
Sau3AI	GATC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	123, 206
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	7 cut(s)	24, 76, 111, 143, 247, 262, 341
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	4 cut(s)	136, 142, 436, 470
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	4 cut(s)	67, 171, 265, 395
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	1 cut(s)	56
StyD4I	CCNGG	2 cut(s)	121, 204
TasI	AATT	4 cut(s)	67, 171, 265, 395
TfiI	GAWTC	1 cut(s)	229
TseI	GCWGC	4 cut(s)	102, 141, 426, 438
TspDTI	ATGAA	2 cut(s)	60, 363
XapI	RAATTY	1 cut(s)	171
XceI	RCATGY	2 cut(s)	96, 290
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.