Prupe.7G078900_v2.0.a1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013896
Physical Location & Seq
Forward (+)
11458729 .. 11459949
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G078900.1

Sequence Viewer

Length: 1221 bp
ATGGAAAGAATGGAAAACCAGGGGCTAAAGTTTCACCACTTTAGCCATGAACATCCGTTGGAGCATACCAATTCACCTCCCAAACAGAACAAGACTTGTGCAGGTTGCAATCTCATGATACTGCCTGGTAAGGACTACTACAGCTGCCCAACATGCTCATTTTTCCTGCACCAAGTGTGCTACAACATGCCCCCAAAAACGCGTCACCCGGCTCATCCAAGCCACTACCTGAACCTCCATCCTTCTCCACCTTCAAGCACCAAAGGGCCCTTGAATTGTCAGGCTTGCGGAAATCATGTCACCGGATTTTACTATGATTGCGCCGATTGCGGCCTTTACTTCCATGGCTTGTGCTCAGGCCTGCCCATTTGCATTGCTATTCCATCCCACCCTCATGCATTGAAATTGTCATTTTCACCCCCATTCGATTTATGTTGTGATCTCTGCAATGAGCCAGGTTATGATGGGTGGCTGTATAGATGTCTCATTTGTGAGTTTGATACTCATATTTCTTGTGCCATTTCTAACCAGACAGGTCTTCAACCTCCCCAAAATGGAACTCCACTGCTATCCACCAGCACGTTTTCAAGGCAGACTAAGCATTCTTCAGCATCTTCTTTTGGGATCAGTGTTGCAGAAAATTACAATATTGAAGGCAATGAACTGTTGCAGTTGGTAAGGCAGAAAGTTTCTAGGGGCAACTTTAAAAGTATTGGCTGGGATGAGAGATTATATTCTCCTAAACAAAATTTCAATGTTAGAGTTAGCAAACTTGGACATGGTGGACCAGATCAAACAGATGCAGGCATGGCCATCACTTCTTCGAATCCAAAAGATCCAGCAACTCCTATTTCTGAAGACATGACTTTGACTCCAAGTTATCAATTCAGCGAAGCGTGTTTTTCAATAGATTTGGCCAAGTCTTATTCACCTTATGGTCAGAGTATTCAAGCAAAGAAGGAAAGTGATCAACAAGGTCCAAAGGGTACTTCTGATGTTCGAGGAACATTTAGCTACAGCGATAGTACTACTGTCCCCGACAAGATTTCGAGCAATTCAAAACCAGCAAAACAACCCAGTTTTGTTAGTGGACCTGGTACTAATTATTCCAATAAAACTGGACCAGAAAGTAGGCTGAATGAAGCATTGTTGATTGAAGGTGACACTCTTAAAAGAAAGGAATTTGGCCCAAAGGAGAAGAGAAAAGCTGGTGAAACAATG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

407

Amino Acids

44.78

Weight (kDa)

7.52

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 92
AccII CGCG 1 cut(s) 202
AciI CCGC 2 cut(s) 288, 330
AclWI GGATC 2 cut(s) 632, 830
AcoI YGGCCR 2 cut(s) 810, 915
AcsI RAATTY 2 cut(s) 748, 1181
AcuI CTGAAG 2 cut(s) 591, 876
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 3 cut(s) 988, 1027, 1099
AfiI CCNNNNNNNGG 1 cut(s) 554
AflIII ACRYGT 1 cut(s) 200
AjnI CCWGG 4 cut(s) 18, 124, 454, 1093
AjuI GAANNNNNNNTTGG 2 cut(s) 973, 1005
AluBI AGCT 3 cut(s) 144, 1014, 1208
AluI AGCT 3 cut(s) 144, 1014, 1208
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 2 cut(s) 632, 830
AoxI GGCC 6 cut(s) 266, 331, 358, 810, 915, 1186
ApaI GGGCCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 748, 1181
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 7 cut(s) 266, 267, 785, 977, 1091, 1121, 1187
AsuC2I CCSGG 1 cut(s) 209
AsuHPI GGTGA 7 cut(s) 26, 66, 197, 292, 408, 921, 1172
AsuII TTCGAA 1 cut(s) 824
AvaII GGWCC 4 cut(s) 785, 977, 1091, 1121
BaeGI GKGCMC 1 cut(s) 270
BalI TGGCCA 2 cut(s) 812, 917
BanII GRGCYC 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 530, 864
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 131
BccI CCATC 4 cut(s) 246, 391, 458, 821
BciT130I CCWGG 4 cut(s) 20, 126, 456, 1095
BclI TGATCA 1 cut(s) 967
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 693
BfmI CTRYAG 2 cut(s) 139, 1015
BfuAI ACCTGC 1 cut(s) 92
BisI GCNGC 2 cut(s) 145, 331
BlsI GCNGC 2 cut(s) 146, 332
BmcAI AGTACT 1 cut(s) 1027
Bme1390I CCNGG 5 cut(s) 20, 126, 209, 456, 1095
Bme18I GGWCC 4 cut(s) 785, 977, 1091, 1121
BmgT120I GGNCC 7 cut(s) 266, 267, 785, 977, 1091, 1121, 1187
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 5 cut(s) 20, 126, 209, 456, 1095
BmrI ACTGGG 1 cut(s) 1071
BmsI GCATC 2 cut(s) 620, 790
BmuI ACTGGG 1 cut(s) 1071
BpiI GAAGAC 2 cut(s) 530, 864
Bpu10I CCTNAGC 1 cut(s) 355
Bpu14I TTCGAA 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 209
BsaJI CCNNGG 2 cut(s) 19, 343
BsaWI WCCGGW 1 cut(s) 302
BsaXI ACNNNNNCTCC 2 cut(s) 856, 886
Bsc4I CCNNNNNNNGG 1 cut(s) 554
Bse1I ACTGG 2 cut(s) 1077, 1123
Bse3DI GCAATG 3 cut(s) 372, 454, 664
BseBI CCWGG 4 cut(s) 20, 126, 456, 1095
BseDI CCNNGG 2 cut(s) 19, 343
BseGI GGATG 5 cut(s) 52, 214, 238, 383, 727
BseLI CCNNNNNNNGG 1 cut(s) 554
BseMI GCAATG 3 cut(s) 372, 454, 664
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 2 cut(s) 1077, 1123
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 131
BseYI CCCAGC 1 cut(s) 717
BsgI GTGCAG 2 cut(s) 120, 152
Bsh1236I CGCG 1 cut(s) 202
BshFI GGCC 6 cut(s) 268, 333, 360, 812, 917, 1188
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 2 cut(s) 209, 303
BslFI GGGAC 1 cut(s) 1019
BslI CCNNNNNNNGG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 1019
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 6 cut(s) 268, 333, 360, 812, 917, 1188
Bsp119I TTCGAA 1 cut(s) 824
Bsp120I GGGCCC 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 270, 356
Bsp143I GATC 5 cut(s) 439, 624, 790, 835, 967
Bsp19I CCATGG 1 cut(s) 343
BspACI CCGC 2 cut(s) 288, 330
BspANI GGCC 6 cut(s) 268, 333, 360, 812, 917, 1188
BspCNI CTCAG 1 cut(s) 368
BspFNI CGCG 1 cut(s) 202
BspHI TCATGA 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 268
BspMI ACCTGC 1 cut(s) 92
BspPI GGATC 2 cut(s) 632, 830
BspT104I TTCGAA 1 cut(s) 824
BsrDI GCAATG 3 cut(s) 372, 454, 664
BsrI ACTGG 2 cut(s) 1077, 1123
BssECI CCNNGG 2 cut(s) 19, 343
BssMI GATC 5 cut(s) 439, 624, 790, 835, 967
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 4 cut(s) 20, 126, 456, 1095
Bst4CI ACNGT 2 cut(s) 666, 1033
Bst6I CTCTTC 1 cut(s) 1193
BstBI TTCGAA 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 286, 362, 805
BstDEI CTNAG 2 cut(s) 355, 597
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 5 cut(s) 52, 214, 238, 383, 727
BstFNI CGCG 1 cut(s) 202
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 5 cut(s) 442, 627, 793, 838, 970
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 5 cut(s) 439, 624, 790, 835, 967
BstMWI GCNNNNNNNGC 4 cut(s) 153, 327, 598, 809
BstNI CCWGG 4 cut(s) 20, 126, 456, 1095
BstNSI RCATGY 2 cut(s) 156, 190
BstSCI CCNGG 5 cut(s) 18, 124, 207, 454, 1093
BstSFI CTRYAG 2 cut(s) 139, 1015
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 202
BstV1I GCAGC 1 cut(s) 131
BstV2I GAAGAC 2 cut(s) 530, 864
BstX2I RGATCY 1 cut(s) 835
BstYI RGATCY 1 cut(s) 835
BsuRI GGCC 6 cut(s) 268, 333, 360, 812, 917, 1188
BtgI CCRYGG 1 cut(s) 343
BtsCI GGATG 5 cut(s) 52, 214, 238, 383, 727
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 2 cut(s) 563, 634
BveI ACCTGC 1 cut(s) 92
Cac8I GCNNGC 3 cut(s) 286, 362, 805
CciI TCATGA 1 cut(s) 114
CfoI GCGC 1 cut(s) 323
Cfr13I GGNCC 7 cut(s) 266, 267, 785, 977, 1091, 1121, 1187
CseI GACGC 1 cut(s) 191
CsiI ACCWGGT 1 cut(s) 1093
Csp6I GTAC 3 cut(s) 987, 1026, 1098
CviQI GTAC 3 cut(s) 987, 1026, 1098
DdeI CTNAG 2 cut(s) 355, 597
DpnI GATC 5 cut(s) 441, 626, 792, 837, 969
DpnII GATC 5 cut(s) 439, 624, 790, 835, 967
DraI TTTAAA 1 cut(s) 706
DraIII CACNNNGTG 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 810, 915
Eam1104I CTCTTC 1 cut(s) 1193
EarI CTCTTC 1 cut(s) 1193
Eco130I CCWWGG 1 cut(s) 343
Eco147I AGGCCT 1 cut(s) 360
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 4 cut(s) 785, 977, 1091, 1121
Eco57I CTGAAG 2 cut(s) 591, 876
EcoO109I RGGNCCY 2 cut(s) 266, 267
EcoRII CCWGG 4 cut(s) 18, 124, 454, 1093
EcoT14I CCWWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 400
EcoT38I GRGCYC 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 343
FaqI GGGAC 1 cut(s) 1019
FbaI TGATCA 1 cut(s) 967
Fnu4HI GCNGC 2 cut(s) 145, 331
FokI GGATG 5 cut(s) 39, 201, 225, 370, 734
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 145, 331
FspBI CTAG 1 cut(s) 693
GlaI GCGC 1 cut(s) 322
GluI GCNGC 2 cut(s) 145, 331
GsaI CCCAGC 1 cut(s) 721
HaeIII GGCC 6 cut(s) 268, 333, 360, 812, 917, 1188
HapII CCGG 2 cut(s) 209, 303
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 323
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 2 cut(s) 826, 871
HpaII CCGG 2 cut(s) 209, 303
HphI GGTGA 7 cut(s) 26, 66, 197, 292, 408, 921, 1172
Hpy166II GTNNAC 2 cut(s) 785, 1091
Hpy188I TCNGA 3 cut(s) 856, 942, 994
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 2 cut(s) 785, 1091
HpyAV CCTTC 5 cut(s) 252, 261, 647, 952, 1151
HpyCH4III ACNGT 2 cut(s) 666, 1033
HpyCH4IV ACGT 1 cut(s) 581
HpyCH4V TGCA 9 cut(s) 101, 108, 169, 372, 398, 447, 635, 670, 803
HpyF10VI GCNNNNNNNGC 4 cut(s) 153, 327, 598, 809
HpyF3I CTNAG 2 cut(s) 355, 597
HpySE526I ACGT 1 cut(s) 581
HspAI GCGC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 967
Kzo9I GATC 5 cut(s) 439, 624, 790, 835, 967
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 1 cut(s) 131
LweI GCATC 2 cut(s) 620, 790
MabI ACCWGGT 1 cut(s) 1093
MaeI CTAG 1 cut(s) 693
MaeII ACGT 1 cut(s) 581
MaeIII GTNAC 3 cut(s) 203, 298, 1160
MalI GATC 5 cut(s) 441, 626, 792, 837, 969
MboI GATC 5 cut(s) 439, 624, 790, 835, 967
MboII GAAGA 6 cut(s) 530, 597, 606, 813, 869, 1210
MflI RGATCY 1 cut(s) 835
MhlI GDGCHC 2 cut(s) 270, 356
MlsI TGGCCA 2 cut(s) 812, 917
MluCI AATT 9 cut(s) 70, 274, 404, 640, 748, 884, 1054, 1102, 1181
MluI ACGCGT 1 cut(s) 200
MluNI TGGCCA 2 cut(s) 812, 917
MlyI GAGTC 1 cut(s) 865
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 87, 245, 402, 555, 995
Mox20I TGGCCA 2 cut(s) 812, 917
Mph1103I ATGCAT 1 cut(s) 400
MscI TGGCCA 2 cut(s) 812, 917
MseI TTAA 2 cut(s) 705, 1170
MslI CAYNNNNRTG 1 cut(s) 393
Msp20I TGGCCA 2 cut(s) 812, 917
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 209, 303
MspR9I CCNGG 5 cut(s) 20, 126, 209, 456, 1095
Mva1269I GAATGC 1 cut(s) 601
MvaI CCWGG 4 cut(s) 20, 126, 456, 1095
MvnI CGCG 1 cut(s) 202
MwoI GCNNNNNNNGC 4 cut(s) 153, 327, 598, 809
NciI CCSGG 1 cut(s) 209
NcoI CCATGG 1 cut(s) 343
NdeII GATC 5 cut(s) 439, 624, 790, 835, 967
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 3 cut(s) 203, 298, 1160
NsiI ATGCAT 1 cut(s) 400
NspI RCATGY 2 cut(s) 156, 190
NspV TTCGAA 1 cut(s) 824
PagI TCATGA 1 cut(s) 114
PceI AGGCCT 1 cut(s) 360
PctI GAATGC 1 cut(s) 601
PfeI GAWTC 1 cut(s) 826
PkrI GCNGC 2 cut(s) 146, 332
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
Psp6I CCWGG 4 cut(s) 18, 124, 454, 1093
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 4 cut(s) 18, 124, 454, 1093
PspN4I GGNNCC 1 cut(s) 268
PspOMI GGGCCC 1 cut(s) 266
PspPI GGNCC 7 cut(s) 266, 267, 785, 977, 1091, 1121, 1187
PsuI RGATCY 1 cut(s) 835
PvuII CAGCTG 1 cut(s) 144
RsaI GTAC 3 cut(s) 988, 1027, 1099
RsaNI GTAC 3 cut(s) 987, 1026, 1098
RseI CAYNNNNRTG 1 cut(s) 393
SaqAI TTAA 2 cut(s) 705, 1170
SatI GCNGC 2 cut(s) 145, 331
Sau3AI GATC 5 cut(s) 439, 624, 790, 835, 967
Sau96I GGNCC 7 cut(s) 266, 267, 785, 977, 1091, 1121, 1187
ScaI AGTACT 1 cut(s) 1027
SchI GAGTC 1 cut(s) 865
ScrFI CCNGG 5 cut(s) 20, 126, 209, 456, 1095
SduI GDGCHC 2 cut(s) 270, 356
SexAI ACCWGGT 1 cut(s) 1093
SfaNI GCATC 2 cut(s) 620, 790
SfcI CTRYAG 2 cut(s) 139, 1015
SfuI TTCGAA 1 cut(s) 824
SinI GGWCC 4 cut(s) 785, 977, 1091, 1121
SmiMI CAYNNNNRTG 1 cut(s) 393
Sse9I AATT 9 cut(s) 70, 274, 404, 640, 748, 884, 1054, 1102, 1181
SseBI AGGCCT 1 cut(s) 360
SsiI CCGC 2 cut(s) 288, 330
SspI AATATT 1 cut(s) 649
SspMI CTAG 1 cut(s) 693
StuI AGGCCT 1 cut(s) 360
StyD4I CCNGG 5 cut(s) 18, 124, 207, 454, 1093
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 666, 1033
TaiI ACGT 1 cut(s) 584
TaqI TCGA 4 cut(s) 426, 824, 1000, 1049
TasI AATT 9 cut(s) 70, 274, 404, 640, 748, 884, 1054, 1102, 1181
TatI WGTACW 1 cut(s) 1025
TauI GCSGC 1 cut(s) 333
TfiI GAWTC 1 cut(s) 826
Tru1I TTAA 2 cut(s) 705, 1170
Tru9I TTAA 2 cut(s) 705, 1170
TscAI CASTG 2 cut(s) 570, 634
TseFI GTSAC 3 cut(s) 203, 298, 1160
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 3 cut(s) 203, 298, 1160
TspDTI ATGAA 3 cut(s) 63, 675, 1155
TspGWI ACGGA 1 cut(s) 45
TspRI CASTG 2 cut(s) 570, 634
VpaK11BI GGWCC 4 cut(s) 785, 977, 1091, 1121
XapI RAATTY 2 cut(s) 748, 1181
XceI RCATGY 2 cut(s) 156, 190
XspI CTAG 1 cut(s) 693
ZrmI AGTACT 1 cut(s) 1027
Zsp2I ATGCAT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.