Rroxscaffold_6G00402290

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0013896
Physical Location & Seq
Forward (+)
24674764 .. 24677501
2738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402290.1

Sequence Viewer

Length: 963 bp
ATGCCCCGAAAAACTCGCCACCCGGCACATCCAAACCACTATCTGAATCTCCATGCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCTTGTGGAAAGCATGTTGCCGGCTTTTACTATCATTGCGCGGAATGTGGCCTCTACTACCATAGCTTTGAGCCTGCTTATGATGGATGGCTCTATAGGTGTCACATATGTGAGTTTGATGCTCATCTTTCTTGTGGCATTTCTGATCAAAAACTTCTTGACAGTTCTCAAAGTTACAATATTGAAGGCAAGGAGCTATTGCAGTTGGTAAGGCATGGATTTGTAAGAAGTGGATCACATCAGATTACAGAAGCAAACATGCTCGATACCATCGCTCTGAACCCAAGACCACAATTTTTTTATCGAGATTCATCAGCTCCTGTCTCTGAAGACACGACTCTGACTCCGAGTAATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCTATGCTCAGAAAAACGAAGGGAGGAAAGAAAGTGGTCATCAAGGTCCAAATGGTACTGATGAATTAGTCCAAGGAACATTTCAGTCCAGCAAGGTCAGCAATAAAGTAGGACCAGAAAACAAAATGAATGAAGCATTCTTGACTCGAAGTGACACACTTACCAGGAAGGAATTAGGCCCAGAGAAGAAGAGAAAACCAAGTGAAACCATGGGGAGGTCAAACATCGGAAATCAGAGTACTAAATCGGATACTGTATGTGTATGGGTGCGGAGAGCAGGTTCTGGGTTTTCACTGCTATTGGAGGATGGTGGTGGATCATGCCTCTACGAACTGGGGTCTAGAGACCTTAGATGTGTTTGTGGGTCAATGGCTACCCAACGTTACTGCTTGGGGAGTGGGGAGATCACCATGGCGGCTTCCAGGAGGATGGAGAATACTGGTTATCCAGTGTCGGCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

320

Amino Acids

35.38

Weight (kDa)

8.2

Isoelectric Point (pI)

60.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 51 7.2e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 767
AccB1I GGYRCC 1 cut(s) 955
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 131, 769, 914
AclI AACGTT 1 cut(s) 880
AclWI GGATC 2 cut(s) 331, 823
AcoI YGGCCR 1 cut(s) 477
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 2 cut(s) 556, 739
AfiI CCNNNNNNNGG 1 cut(s) 714
AgsI TTSAA 2 cut(s) 66, 275
AjnI CCWGG 2 cut(s) 662, 920
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AleI CACNNNNGTG 1 cut(s) 198
AloI GAACNNNNNNTCC 2 cut(s) 763, 795
AluBI AGCT 4 cut(s) 77, 156, 286, 407
AluI AGCT 4 cut(s) 77, 156, 286, 407
Alw26I GTCTC 2 cut(s) 418, 837
AlwI GGATC 2 cut(s) 331, 823
AlwNI CAGNNNCTG 2 cut(s) 410, 782
AoxI GGCC 3 cut(s) 139, 477, 676
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 3 cut(s) 545, 611, 677
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 51, 489, 898
AvaII GGWCC 2 cut(s) 545, 611
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 955
BbsI GAAGAC 1 cut(s) 426
BccI CCATC 5 cut(s) 167, 171, 368, 800, 922
BciT130I CCWGG 2 cut(s) 664, 922
BciVI GTATCC 1 cut(s) 742
BclI TGATCA 1 cut(s) 235
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 418, 837
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 1 cut(s) 184
BfuAI ACCTGC 1 cut(s) 767
BfuI GTATCC 1 cut(s) 742
BisI GCNGC 1 cut(s) 915
BlsI GCNGC 1 cut(s) 916
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 3 cut(s) 23, 664, 922
Bme18I GGWCC 2 cut(s) 545, 611
BmgT120I GGNCC 3 cut(s) 545, 611, 677
BmiI GGNNCC 1 cut(s) 957
BmrFI CCNGG 3 cut(s) 23, 664, 922
BmrI ACTGGG 1 cut(s) 842
BmsI GCATC 2 cut(s) 199, 445
BmuI ACTGGG 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 837
BsaJI CCNNGG 3 cut(s) 571, 708, 909
BsaXI ACNNNNNCTCC 4 cut(s) 418, 448, 763, 793
Bsc4I CCNNNNNNNGG 1 cut(s) 714
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 3 cut(s) 837, 943, 947
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 2 cut(s) 664, 922
BseDI CCNNGG 3 cut(s) 571, 708, 909
BseGI GGATG 4 cut(s) 28, 182, 811, 933
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 714
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 521
BseNI ACTGG 3 cut(s) 837, 943, 947
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 3 cut(s) 141, 479, 678
BshNI GGYRCC 1 cut(s) 955
BsiSI CCGG 2 cut(s) 23, 111
BslI CCNNNNNNNGG 1 cut(s) 714
BsmAI GTCTC 2 cut(s) 418, 837
BsmI GAATGC 1 cut(s) 635
BsnI GGCC 3 cut(s) 141, 479, 678
Bso31I GGTCTC 1 cut(s) 837
Bsp143I GATC 4 cut(s) 235, 323, 815, 903
Bsp19I CCATGG 2 cut(s) 708, 909
BspACI CCGC 3 cut(s) 131, 769, 914
BspANI GGCC 3 cut(s) 141, 479, 678
BspCNI CTCAG 1 cut(s) 520
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 957
BspMI ACCTGC 1 cut(s) 767
BspPI GGATC 2 cut(s) 331, 823
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 837
BsrDI GCAATG 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 3 cut(s) 837, 943, 947
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 571, 708, 909
BssMI GATC 4 cut(s) 235, 323, 815, 903
BssT1I CCWWGG 3 cut(s) 571, 708, 909
Bst2UI CCWGG 2 cut(s) 664, 922
Bst4CI ACNGT 2 cut(s) 254, 754
Bst6I CTCTTC 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 112, 165
BstDEI CTNAG 3 cut(s) 507, 848, 960
BstDSI CCRYGG 2 cut(s) 708, 909
BstF5I GGATG 4 cut(s) 28, 182, 811, 933
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 238, 326, 818, 906
BstMAI GTCTC 2 cut(s) 418, 837
BstMBI GATC 4 cut(s) 235, 323, 815, 903
BstMWI GCNNNNNNNGC 1 cut(s) 597
BstNI CCWGG 2 cut(s) 664, 922
BstNSI RCATGY 2 cut(s) 107, 352
BstSCI CCNGG 3 cut(s) 21, 662, 920
BstSFI CTRYAG 1 cut(s) 184
BstUI CGCG 1 cut(s) 131
BstV2I GAAGAC 1 cut(s) 426
BstXI CCANNNNNNTGG 2 cut(s) 475, 928
BsuI GTATCC 1 cut(s) 742
BsuRI GGCC 3 cut(s) 141, 479, 678
BtgI CCRYGG 2 cut(s) 708, 909
BtgZI GCGATG 1 cut(s) 346
BtsCI GGATG 4 cut(s) 28, 182, 811, 933
BtsI GCAGTG 1 cut(s) 791
BtsIMutI CAGTG 2 cut(s) 791, 954
BveI ACCTGC 1 cut(s) 767
Cac8I GCNNGC 2 cut(s) 112, 165
CaiI CAGNNNCTG 2 cut(s) 410, 782
CfoI GCGC 1 cut(s) 131
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 545, 611, 677
Csp6I GTAC 2 cut(s) 555, 738
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 7 cut(s) 53, 104, 305, 349, 709, 819, 910
CviQI GTAC 2 cut(s) 555, 738
DdeI CTNAG 3 cut(s) 507, 848, 960
DpnI GATC 4 cut(s) 237, 325, 817, 905
DpnII GATC 4 cut(s) 235, 323, 815, 903
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 1 cut(s) 683
EarI CTCTTC 1 cut(s) 683
Eco130I CCWWGG 3 cut(s) 571, 708, 909
Eco31I GGTCTC 1 cut(s) 837
Eco47I GGWCC 2 cut(s) 545, 611
Eco57I CTGAAG 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 662, 920
EcoT14I CCWWGG 3 cut(s) 571, 708, 909
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 3 cut(s) 571, 708, 909
FaeI CATG 7 cut(s) 56, 107, 308, 352, 712, 822, 913
FatI CATG 7 cut(s) 52, 103, 304, 348, 708, 818, 909
FauNDI CATATG 1 cut(s) 197
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 915
FokI GGATG 4 cut(s) 15, 189, 818, 940
Fsp4HI GCNGC 1 cut(s) 915
FspBI CTAG 1 cut(s) 840
GlaI GCGC 1 cut(s) 130
GluI GCNGC 1 cut(s) 915
HaeIII GGCC 3 cut(s) 141, 479, 678
HapII CCGG 2 cut(s) 23, 111
HhaI GCGC 1 cut(s) 131
Hin1II CATG 7 cut(s) 56, 107, 308, 352, 712, 822, 913
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 5 cut(s) 46, 398, 427, 433, 643
HpaII CCGG 2 cut(s) 23, 111
HphI GGTGA 3 cut(s) 51, 489, 898
Hpy188III TCNNGA 4 cut(s) 248, 395, 640, 840
HpyAV CCTTC 4 cut(s) 72, 269, 512, 661
HpyCH4III ACNGT 2 cut(s) 254, 754
HpyCH4IV ACGT 1 cut(s) 880
HpyCH4V TGCA 3 cut(s) 87, 292, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 597
HpyF3I CTNAG 3 cut(s) 507, 848, 960
HpySE526I ACGT 1 cut(s) 880
Hsp92II CATG 7 cut(s) 56, 107, 308, 352, 712, 822, 913
HspAI GCGC 1 cut(s) 129
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 4 cut(s) 235, 323, 815, 903
LmnI GCTCC 3 cut(s) 74, 283, 412
LweI GCATC 2 cut(s) 199, 445
MaeI CTAG 1 cut(s) 840
MaeII ACGT 1 cut(s) 880
MaeIII GTNAC 4 cut(s) 191, 263, 650, 881
MalI GATC 4 cut(s) 237, 325, 817, 905
MboI GATC 4 cut(s) 235, 323, 815, 903
MboII GAAGA 3 cut(s) 431, 697, 700
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 6 cut(s) 82, 383, 446, 493, 563, 671
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 3 cut(s) 421, 427, 637
MnlI CCTC 6 cut(s) 152, 516, 708, 796, 833, 918
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 460
MroNI GCCGGC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 2 cut(s) 23, 111
MspR9I CCNGG 3 cut(s) 23, 664, 922
Mva1269I GAATGC 1 cut(s) 635
MvaI CCWGG 2 cut(s) 664, 922
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 597
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 2 cut(s) 708, 909
NdeI CATATG 1 cut(s) 197
NdeII GATC 4 cut(s) 235, 323, 815, 903
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 7 cut(s) 56, 107, 308, 352, 712, 822, 913
NlaIV GGNNCC 1 cut(s) 957
NmuCI GTSAC 2 cut(s) 191, 650
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 2 cut(s) 107, 352
OliI CACNNNNGTG 1 cut(s) 198
PctI GAATGC 1 cut(s) 635
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 46, 398
PfoI TCCNGGA 1 cut(s) 920
PkrI GCNGC 1 cut(s) 916
PleI GAGTC 3 cut(s) 421, 427, 637
PpsI GAGTC 3 cut(s) 421, 427, 637
Psp1406I AACGTT 1 cut(s) 880
Psp6I CCWGG 2 cut(s) 662, 920
PspGI CCWGG 2 cut(s) 662, 920
PspN4I GGNNCC 1 cut(s) 957
PspPI GGNCC 3 cut(s) 545, 611, 677
PstNI CAGNNNCTG 2 cut(s) 410, 782
RsaI GTAC 2 cut(s) 556, 739
RsaNI GTAC 2 cut(s) 555, 738
RseI CAYNNNNRTG 1 cut(s) 198
SatI GCNGC 1 cut(s) 915
Sau3AI GATC 4 cut(s) 235, 323, 815, 903
Sau96I GGNCC 3 cut(s) 545, 611, 677
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 3 cut(s) 421, 427, 637
ScrFI CCNGG 3 cut(s) 23, 664, 922
SfaNI GCATC 2 cut(s) 199, 445
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 2 cut(s) 545, 611
SmiMI CAYNNNNRTG 1 cut(s) 198
Sse9I AATT 6 cut(s) 82, 383, 446, 493, 563, 671
SsiI CCGC 3 cut(s) 131, 769, 914
SspI AATATT 1 cut(s) 271
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 3 cut(s) 21, 662, 920
StyI CCWWGG 3 cut(s) 571, 708, 909
TaaI ACNGT 2 cut(s) 254, 754
TaiI ACGT 1 cut(s) 883
TaqI TCGA 3 cut(s) 354, 394, 646
TasI AATT 6 cut(s) 82, 383, 446, 493, 563, 671
TatI WGTACW 1 cut(s) 737
TauI GCSGC 1 cut(s) 917
TfiI GAWTC 2 cut(s) 46, 398
TscAI CASTG 2 cut(s) 798, 954
TseFI GTSAC 2 cut(s) 191, 650
Tsp45I GTSAC 2 cut(s) 191, 650
TspDTI ATGAA 4 cut(s) 390, 576, 641, 645
TspRI CASTG 2 cut(s) 798, 954
VpaK11BI GGWCC 2 cut(s) 545, 611
XbaI TCTAGA 1 cut(s) 839
XceI RCATGY 2 cut(s) 107, 352
XspI CTAG 1 cut(s) 840
ZrmI AGTACT 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.