FvH4_6g22090

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013896
Physical Location & Seq
Reverse (-)
15786370 .. 15787254
885 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22090.t1

Sequence Viewer

Length: 885 bp
ATGCCCCAAAAAAATCGCCACCCGGCACATCCAAATCACTATTTGAATCTCCATCCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCCTGCGGAAAGCTTGTTGCCGGATTTTACTATGATTGCAAGGAATGTGGCCTTTACTACCATAGCTTGTGCTCCATCCTGCCTTTCTCTATTGCAACTTCATCACACCCTCACGCGTTGAAATTGTCCTTTTTGCCTCCGTGTGATCTGTGCTGCGATATCTGCAGTGAGCCTGGTTATGATGGATGGCTGTATAGGTGTCACATATGTGAGTTTGATGCTCATCTTTCTTGTGGCATTTCTGATCAAAAACTTCTTGATAGTTCTCAAGGTTACAATATTGAAGGCAAGGAGCTCTTGCAGTTGGTAAGGAATGGATTTGTAAGAAGTGGATCACATCAGGTAACAGAAGCAAACATGCCCGATACCATCGCTCTGAACCCAAGACAAGAATCTTTTTATCAAGATTCATCAGCTCCTGTCTCCGGAGACACTACTCTGACTCCGAGTCATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCTATGGTGAGAAAAACGAAGGGAGGAAAGAAAATGGTCATCAAGGTCCAAAGGGTGGTGCTGAATTAGTCCAAGTTACGTTTGAGTCCATCAAAAGTACTATTACAAGCAACAAGGTCTTGAGCAATAAAGTAGGACCAGAAAATAGAATGGATGAAGCATTCTTGACTCGAAATGACACTCTTACCAGGAAGGAATTAGGCCTAGAGAAGAAGAGAAAATCAAGTGAACCCGTGGGGAGGTCAAACATTGGAAATCAGAGTACCAAATCGGATACTGTAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

295

Amino Acids

32.4

Weight (kDa)

6.85

Isoelectric Point (pI)

54.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 54 3.3e-08 C1 domain
C1_2 PF03107 65 - 108 4.5e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 653
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 515
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 576
AfaI GTAC 2 cut(s) 697, 862
AfiI CCNNNNNNNGG 3 cut(s) 515, 653, 837
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 46, 66, 211, 374
AhdI GACNNNNNGTC 1 cut(s) 537
AjnI CCWGG 2 cut(s) 262, 785
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 5 cut(s) 77, 103, 156, 385, 506
AluI AGCT 5 cut(s) 77, 103, 156, 385, 506
Alw21I GWGCWC 2 cut(s) 164, 387
Alw26I GTCTC 2 cut(s) 513, 517
AlwI GGATC 1 cut(s) 430
AlwNI CAGNNNCTG 1 cut(s) 509
Aor13HI TCCGGA 1 cut(s) 515
AoxI GGCC 4 cut(s) 90, 139, 576, 799
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 2 cut(s) 644, 734
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 3 cut(s) 51, 588, 617
AvaII GGWCC 2 cut(s) 644, 734
BalI TGGCCA 1 cut(s) 578
BanII GRGCYC 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 164, 387
BbvI GCAGC 1 cut(s) 230
BccI CCATC 6 cut(s) 60, 173, 266, 270, 467, 695
BciT130I CCWGG 2 cut(s) 264, 787
BciVI GTATCC 1 cut(s) 865
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 513, 517
BfaI CTAG 1 cut(s) 803
BfmI CTRYAG 1 cut(s) 253
BfuI GTATCC 1 cut(s) 865
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
BmcAI AGTACT 1 cut(s) 697
Bme1390I CCNGG 3 cut(s) 23, 264, 787
Bme18I GGWCC 2 cut(s) 644, 734
BmeRI GACNNNNNGTC 1 cut(s) 537
BmgT120I GGNCC 2 cut(s) 644, 734
BmrFI CCNGG 3 cut(s) 23, 264, 787
BmsI GCATC 2 cut(s) 298, 544
BpuEI CTTGAG 2 cut(s) 342, 739
BpuMI CCSGG 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 831
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 3 cut(s) 515, 653, 837
Bse8I GATNNNNATC 1 cut(s) 312
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 2 cut(s) 264, 787
BseDI CCNNGG 1 cut(s) 831
BseGI GGATG 5 cut(s) 28, 52, 165, 281, 757
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 3 cut(s) 515, 653, 837
BseXI GCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 206
BshFI GGCC 4 cut(s) 92, 141, 578, 801
BsiHKAI GWGCWC 2 cut(s) 164, 387
BsiSI CCGG 3 cut(s) 23, 111, 516
BslI CCNNNNNNNGG 3 cut(s) 515, 653, 837
BsmAI GTCTC 2 cut(s) 513, 517
BsmI GAATGC 1 cut(s) 758
BsnI GGCC 4 cut(s) 92, 141, 578, 801
Bsp1286I GDGCHC 2 cut(s) 164, 387
Bsp13I TCCGGA 1 cut(s) 515
Bsp143I GATC 3 cut(s) 235, 334, 422
BspACI CCGC 1 cut(s) 96
BspANI GGCC 4 cut(s) 92, 141, 578, 801
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 1 cut(s) 206
BspMAI CTGCAG 1 cut(s) 257
BspPI GGATC 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 831
BssMI GATC 3 cut(s) 235, 334, 422
Bst2UI CCWGG 2 cut(s) 264, 787
Bst4CI ACNGT 1 cut(s) 877
Bst6I CTCTTC 1 cut(s) 806
BstAPI GCANNNNNTGC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 94
BstDSI CCRYGG 1 cut(s) 831
BstF5I GGATG 5 cut(s) 28, 52, 165, 281, 757
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 3 cut(s) 238, 337, 425
BstMAI GTCTC 2 cut(s) 513, 517
BstMBI GATC 3 cut(s) 235, 334, 422
BstMWI GCNNNNNNNGC 2 cut(s) 93, 252
BstNI CCWGG 2 cut(s) 264, 787
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 3 cut(s) 21, 262, 785
BstSFI CTRYAG 1 cut(s) 253
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 230
BstXI CCANNNNNNTGG 1 cut(s) 574
BsuI GTATCC 1 cut(s) 865
BsuRI GGCC 4 cut(s) 92, 141, 578, 801
BtgI CCRYGG 1 cut(s) 831
BtgZI GCGATG 1 cut(s) 445
BtsCI GGATG 5 cut(s) 28, 52, 165, 281, 757
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 94
CaiI CAGNNNCTG 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 644, 734
Csp6I GTAC 2 cut(s) 696, 861
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 696, 861
DpnI GATC 3 cut(s) 237, 336, 424
DpnII GATC 3 cut(s) 235, 334, 422
DriI GACNNNNNGTC 1 cut(s) 537
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 806
Eam1105I GACNNNNNGTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 806
Ecl136II GAGCTC 1 cut(s) 385
Eco147I AGGCCT 2 cut(s) 92, 801
Eco24I GRGCYC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 644, 734
Eco53kI GAGCTC 1 cut(s) 385
EcoICRI GAGCTC 1 cut(s) 385
EcoRII CCWGG 2 cut(s) 262, 785
EcoRV GATATC 1 cut(s) 250
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 387
FaeI CATG 1 cut(s) 451
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FatI CATG 1 cut(s) 447
FauNDI CATATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 5 cut(s) 15, 39, 152, 288, 764
FriOI GRGCYC 1 cut(s) 387
Fsp4HI GCNGC 1 cut(s) 244
FspBI CTAG 1 cut(s) 803
GluI GCNGC 1 cut(s) 244
HaeIII GGCC 4 cut(s) 92, 141, 578, 801
HapII CCGG 3 cut(s) 23, 111, 516
Hin1II CATG 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 7 cut(s) 46, 482, 497, 532, 538, 683, 766
HpaII CCGG 3 cut(s) 23, 111, 516
HphI GGTGA 3 cut(s) 51, 588, 617
Hpy166II GTNNAC 1 cut(s) 827
Hpy188I TCNGA 6 cut(s) 334, 468, 531, 537, 858, 871
Hpy188III TCNNGA 5 cut(s) 347, 494, 516, 718, 763
Hpy8I GTNNAC 1 cut(s) 827
HpyAV CCTTC 5 cut(s) 66, 72, 368, 611, 784
HpyCH4III ACNGT 1 cut(s) 877
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 6 cut(s) 87, 129, 185, 255, 391, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 252
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 1 cut(s) 451
Kpn2I TCCGGA 1 cut(s) 515
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 235, 334, 422
LmnI GCTCC 4 cut(s) 74, 167, 382, 511
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 2 cut(s) 298, 544
MaeI CTAG 1 cut(s) 803
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 4 cut(s) 290, 362, 433, 673
MalI GATC 3 cut(s) 237, 336, 424
MboI GATC 3 cut(s) 235, 334, 422
MboII GAAGA 2 cut(s) 820, 823
MhlI GDGCHC 2 cut(s) 164, 387
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 6 cut(s) 82, 212, 545, 592, 662, 794
MluI ACGCGT 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 4 cut(s) 526, 547, 692, 760
MnlI CCTC 4 cut(s) 210, 237, 615, 831
Mox20I TGGCCA 1 cut(s) 578
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 515
MscI TGGCCA 1 cut(s) 578
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 3 cut(s) 23, 111, 516
MspR9I CCNGG 3 cut(s) 23, 264, 787
Mva1269I GAATGC 1 cut(s) 758
MvaI CCWGG 2 cut(s) 264, 787
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 93, 252
NciI CCSGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 296
NdeII GATC 3 cut(s) 235, 334, 422
NlaIII CATG 1 cut(s) 451
NmuCI GTSAC 1 cut(s) 290
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 297
PceI AGGCCT 2 cut(s) 92, 801
PctI GAATGC 1 cut(s) 758
PfeI GAWTC 3 cut(s) 46, 482, 497
PflMI CCANNNNNTGG 1 cut(s) 653
PkrI GCNGC 1 cut(s) 245
PleI GAGTC 4 cut(s) 526, 546, 691, 760
PpsI GAGTC 4 cut(s) 526, 546, 691, 760
Psp124BI GAGCTC 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 262, 785
PspGI CCWGG 2 cut(s) 262, 785
PspPI GGNCC 2 cut(s) 644, 734
PstI CTGCAG 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 697, 862
RsaNI GTAC 2 cut(s) 696, 861
RseI CAYNNNNRTG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 387
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 3 cut(s) 235, 334, 422
Sau96I GGNCC 2 cut(s) 644, 734
ScaI AGTACT 1 cut(s) 697
SchI GAGTC 4 cut(s) 526, 547, 692, 760
ScrFI CCNGG 3 cut(s) 23, 264, 787
SduI GDGCHC 2 cut(s) 164, 387
SfaNI GCATC 2 cut(s) 298, 544
SfcI CTRYAG 1 cut(s) 253
SinI GGWCC 2 cut(s) 644, 734
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 357, 718
SmoI CTYRAG 2 cut(s) 357, 718
Sse9I AATT 6 cut(s) 82, 212, 545, 592, 662, 794
SseBI AGGCCT 2 cut(s) 92, 801
SsiI CCGC 1 cut(s) 96
SspI AATATT 1 cut(s) 370
SspMI CTAG 1 cut(s) 803
SstI GAGCTC 1 cut(s) 387
StuI AGGCCT 2 cut(s) 92, 801
StyD4I CCNGG 3 cut(s) 21, 262, 785
TaaI ACNGT 1 cut(s) 877
TaiI ACGT 1 cut(s) 680
TaqI TCGA 1 cut(s) 769
TasI AATT 6 cut(s) 82, 212, 545, 592, 662, 794
TatI WGTACW 1 cut(s) 695
TfiI GAWTC 3 cut(s) 46, 482, 497
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 3 cut(s) 180, 489, 768
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 2 cut(s) 644, 734
XceI RCATGY 1 cut(s) 451
XspI CTAG 1 cut(s) 803
ZrmI AGTACT 1 cut(s) 697
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.