Rw3G020200

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0013896
Physical Location & Seq
Reverse (-)
23565830 .. 23566690
861 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020200.1

Sequence Viewer

Length: 861 bp
ATGCCCCGAAAAACTCGCCACCCGGCACATCCAAACCACTATTTGAATCTCCATGCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCTTGTGGAAAGCATGTTGCCGGCTTTTACTATCATTGCGCGGAATGTGGCCTCTACTACCATAGCTTGTGCTCCATCCTGCCCTTCTCTATTGCAACTTCATCACACCCTCACGCGTTGAAATTGTCATTTTTGCCCCCCTGCGATTTGTGCTGCGATATCTGCAGCGAGCCTGCTTATGATGGATGGATCTATAGGTGTCACATATGTGAGTTTGATGCTCATCTTTCTTGTGGCATTTCTGATCAAAAACTTCTTGACAGTTCTCAAAGTTACAATATTGAAGGCAAGGAGCTATTGCAGTTGGTAAGGCATGGATTTGTAAGAAGGGGATCACATCAGATTACAGAAGTAAACATGCCCGATACCAGCGCTCTGAACCCAAGACGACAATTTTTGTATCGAGATTCATCAGCTCCTGTCTCTGAAGACACGACTCTGACTCCGAGTAATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCTATGCTCAGAAAAACGAAGGGAGGAAAGAAAGTGGTCATCAAGGTCCAAATGGTACTGCTGAATTAGTCCAAGGAACATTTCAGTCCAGCAAGGTCAGCAATAAAGTAGGACCAGAAAACAAAATGAATGAAGCATTCTTGACTCGAAGTGACACACTTACCAGGAAGGAATTAGGCCCAGAGAAGAAGAGAAAACCAAGTGAAACCATGGGGAGGTCAAACATCGGAAATCAGAGTACTAAATCGGATACTGTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

286

Amino Acids

31.74

Weight (kDa)

8.39

Isoelectric Point (pI)

62.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 54 2.4e-08 C1 domain
C1_2 PF03107 65 - 108 2.7e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 131, 206
AciI CCGC 1 cut(s) 131
AclWI GGATC 2 cut(s) 287, 430
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 2 cut(s) 655, 838
AfeI AGCGCT 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 813
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 4 cut(s) 46, 66, 211, 374
AjnI CCWGG 1 cut(s) 761
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AleI CACNNNNGTG 1 cut(s) 297
AluBI AGCT 4 cut(s) 77, 156, 385, 506
AluI AGCT 4 cut(s) 77, 156, 385, 506
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 1 cut(s) 517
AlwI GGATC 2 cut(s) 287, 430
AlwNI CAGNNNCTG 1 cut(s) 509
Aor51HI AGCGCT 1 cut(s) 463
AoxI GGCC 3 cut(s) 139, 576, 775
ApeKI GCWGC 2 cut(s) 243, 255
AspLEI GCGC 2 cut(s) 131, 464
AspS9I GGNCC 3 cut(s) 644, 710, 776
AsuC2I CCSGG 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 51, 588
AvaII GGWCC 2 cut(s) 644, 710
BalI TGGCCA 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 2 cut(s) 230, 267
BccI CCATC 3 cut(s) 173, 266, 270
BciT130I CCWGG 1 cut(s) 763
BciVI GTATCC 1 cut(s) 841
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 1 cut(s) 517
BfmI CTRYAG 2 cut(s) 253, 283
BfoI RGCGCY 1 cut(s) 465
BfuI GTATCC 1 cut(s) 841
BisI GCNGC 2 cut(s) 244, 256
BlsI GCNGC 2 cut(s) 245, 257
BmcAI AGTACT 1 cut(s) 838
Bme1390I CCNGG 2 cut(s) 23, 763
Bme18I GGWCC 2 cut(s) 644, 710
BmgT120I GGNCC 3 cut(s) 644, 710, 776
BmrFI CCNGG 2 cut(s) 23, 763
BmsI GCATC 2 cut(s) 298, 544
BpiI GAAGAC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 23
BsaBI GATNNNNATC 1 cut(s) 312
BsaJI CCNNGG 2 cut(s) 670, 807
BsaXI ACNNNNNCTCC 2 cut(s) 517, 547
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse118I RCCGGY 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 1 cut(s) 763
BseDI CCNNGG 2 cut(s) 670, 807
BseGI GGATG 3 cut(s) 28, 165, 281
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 620
BseXI GCAGC 2 cut(s) 230, 267
Bsh1236I CGCG 2 cut(s) 131, 206
BshFI GGCC 3 cut(s) 141, 578, 777
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 2 cut(s) 23, 111
BslI CCNNNNNNNGG 1 cut(s) 813
BsmAI GTCTC 1 cut(s) 517
BsmI GAATGC 1 cut(s) 734
BsnI GGCC 3 cut(s) 141, 578, 777
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 3 cut(s) 279, 334, 422
Bsp19I CCATGG 1 cut(s) 807
BspACI CCGC 1 cut(s) 131
BspANI GGCC 3 cut(s) 141, 578, 777
BspCNI CTCAG 1 cut(s) 619
BspFNI CGCG 2 cut(s) 131, 206
BspMAI CTGCAG 1 cut(s) 257
BspPI GGATC 2 cut(s) 287, 430
BsrDI GCAATG 1 cut(s) 124
BsrFI RCCGGY 1 cut(s) 110
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 670, 807
BssMI GATC 3 cut(s) 279, 334, 422
BssT1I CCWWGG 2 cut(s) 670, 807
Bst2UI CCWGG 1 cut(s) 763
Bst4CI ACNGT 2 cut(s) 353, 853
Bst6I CTCTTC 1 cut(s) 782
BstC8I GCNNGC 3 cut(s) 112, 260, 264
BstDEI CTNAG 1 cut(s) 606
BstDSI CCRYGG 1 cut(s) 807
BstF5I GGATG 3 cut(s) 28, 165, 281
BstFNI CGCG 2 cut(s) 131, 206
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 2 cut(s) 131, 464
BstKTI GATC 3 cut(s) 282, 337, 425
BstMAI GTCTC 1 cut(s) 517
BstMBI GATC 3 cut(s) 279, 334, 422
BstMWI GCNNNNNNNGC 3 cut(s) 240, 252, 696
BstNI CCWGG 1 cut(s) 763
BstNSI RCATGY 2 cut(s) 107, 451
BstSCI CCNGG 2 cut(s) 21, 761
BstSFI CTRYAG 2 cut(s) 253, 283
BstUI CGCG 2 cut(s) 131, 206
BstV1I GCAGC 2 cut(s) 230, 267
BstV2I GAAGAC 1 cut(s) 525
BstX2I RGATCY 1 cut(s) 279
BstXI CCANNNNNNTGG 1 cut(s) 574
BstYI RGATCY 1 cut(s) 279
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 3 cut(s) 141, 578, 777
BtgI CCRYGG 1 cut(s) 807
BtsCI GGATG 3 cut(s) 28, 165, 281
Cac8I GCNNGC 3 cut(s) 112, 260, 264
CaiI CAGNNNCTG 1 cut(s) 509
CfoI GCGC 2 cut(s) 131, 464
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 3 cut(s) 644, 710, 776
Csp6I GTAC 2 cut(s) 654, 837
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 5 cut(s) 53, 104, 404, 448, 808
CviQI GTAC 2 cut(s) 654, 837
DdeI CTNAG 1 cut(s) 606
DpnI GATC 3 cut(s) 281, 336, 424
DpnII GATC 3 cut(s) 279, 334, 422
EaeI YGGCCR 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Eco130I CCWWGG 2 cut(s) 670, 807
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 644, 710
Eco47III AGCGCT 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 761
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 670, 807
EcoT22I ATGCAT 1 cut(s) 559
ErhI CCWWGG 2 cut(s) 670, 807
FaeI CATG 5 cut(s) 56, 107, 407, 451, 811
FatI CATG 5 cut(s) 52, 103, 403, 447, 807
FauNDI CATATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 2 cut(s) 244, 256
FokI GGATG 3 cut(s) 15, 152, 288
Fsp4HI GCNGC 2 cut(s) 244, 256
GlaI GCGC 2 cut(s) 130, 463
GluI GCNGC 2 cut(s) 244, 256
HaeII RGCGCY 1 cut(s) 465
HaeIII GGCC 3 cut(s) 141, 578, 777
HapII CCGG 2 cut(s) 23, 111
HhaI GCGC 2 cut(s) 131, 464
Hin1II CATG 5 cut(s) 56, 107, 407, 451, 811
Hin6I GCGC 2 cut(s) 129, 462
HinP1I GCGC 2 cut(s) 129, 462
HinfI GANTC 5 cut(s) 46, 497, 526, 532, 742
HpaII CCGG 2 cut(s) 23, 111
HphI GGTGA 2 cut(s) 51, 588
Hpy166II GTNNAC 1 cut(s) 445
Hpy188III TCNNGA 3 cut(s) 347, 494, 739
Hpy8I GTNNAC 1 cut(s) 445
HpyAV CCTTC 6 cut(s) 72, 184, 368, 411, 611, 760
HpyCH4III ACNGT 2 cut(s) 353, 853
HpyCH4V TGCA 5 cut(s) 87, 185, 255, 391, 557
HpyF10VI GCNNNNNNNGC 3 cut(s) 240, 252, 696
HpyF3I CTNAG 1 cut(s) 606
Hsp92II CATG 5 cut(s) 56, 107, 407, 451, 811
HspAI GCGC 2 cut(s) 129, 462
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 279, 334, 422
LmnI GCTCC 4 cut(s) 74, 167, 382, 511
Lsp1109I GCAGC 2 cut(s) 230, 267
LweI GCATC 2 cut(s) 298, 544
MaeIII GTNAC 3 cut(s) 290, 362, 749
MalI GATC 3 cut(s) 281, 336, 424
MboI GATC 3 cut(s) 279, 334, 422
MboII GAAGA 3 cut(s) 530, 796, 799
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 7 cut(s) 82, 212, 482, 545, 592, 662, 770
MluI ACGCGT 1 cut(s) 204
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 3 cut(s) 520, 526, 736
MnlI CCTC 4 cut(s) 152, 210, 615, 807
Mox20I TGGCCA 1 cut(s) 578
Mph1103I ATGCAT 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 859
MslI CAYNNNNRTG 1 cut(s) 297
Msp20I TGGCCA 1 cut(s) 578
MspI CCGG 2 cut(s) 23, 111
MspR9I CCNGG 2 cut(s) 23, 763
Mva1269I GAATGC 1 cut(s) 734
MvaI CCWGG 1 cut(s) 763
MvnI CGCG 2 cut(s) 131, 206
MwoI GCNNNNNNNGC 3 cut(s) 240, 252, 696
NaeI GCCGGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 23
NcoI CCATGG 1 cut(s) 807
NdeI CATATG 1 cut(s) 296
NdeII GATC 3 cut(s) 279, 334, 422
NgoMIV GCCGGC 1 cut(s) 110
NlaIII CATG 5 cut(s) 56, 107, 407, 451, 811
NmuCI GTSAC 2 cut(s) 290, 749
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 107, 451
OliI CACNNNNGTG 1 cut(s) 297
PctI GAATGC 1 cut(s) 734
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 46, 497
PkrI GCNGC 2 cut(s) 245, 257
PleI GAGTC 3 cut(s) 520, 526, 736
PpsI GAGTC 3 cut(s) 520, 526, 736
Psp6I CCWGG 1 cut(s) 761
PspGI CCWGG 1 cut(s) 761
PspPI GGNCC 3 cut(s) 644, 710, 776
PstI CTGCAG 1 cut(s) 257
PstNI CAGNNNCTG 1 cut(s) 509
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 2 cut(s) 655, 838
RsaNI GTAC 2 cut(s) 654, 837
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 859
SatI GCNGC 2 cut(s) 244, 256
Sau3AI GATC 3 cut(s) 279, 334, 422
Sau96I GGNCC 3 cut(s) 644, 710, 776
ScaI AGTACT 1 cut(s) 838
SchI GAGTC 3 cut(s) 520, 526, 736
ScrFI CCNGG 2 cut(s) 23, 763
SduI GDGCHC 1 cut(s) 164
SetI ASST 9 cut(s) 64, 79, 158, 290, 387, 508, 646, 696, 818
SfaNI GCATC 2 cut(s) 298, 544
SfcI CTRYAG 2 cut(s) 253, 283
SinI GGWCC 2 cut(s) 644, 710
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 7 cut(s) 82, 212, 482, 545, 592, 662, 770
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 370
StyD4I CCNGG 2 cut(s) 21, 761
StyI CCWWGG 2 cut(s) 670, 807
TaaI ACNGT 2 cut(s) 353, 853
TaqI TCGA 2 cut(s) 493, 745
TasI AATT 7 cut(s) 82, 212, 482, 545, 592, 662, 770
TatI WGTACW 1 cut(s) 836
TfiI GAWTC 2 cut(s) 46, 497
Tru1I TTAA 1 cut(s) 859
Tru9I TTAA 1 cut(s) 859
TseFI GTSAC 2 cut(s) 290, 749
TseI GCWGC 2 cut(s) 243, 255
Tsp45I GTSAC 2 cut(s) 290, 749
TspDTI ATGAA 4 cut(s) 180, 489, 740, 744
VpaK11BI GGWCC 2 cut(s) 644, 710
XceI RCATGY 2 cut(s) 107, 451
ZrmI AGTACT 1 cut(s) 838
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.