RchiOBHm_Chr3g0479421

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013896
Physical Location & Seq
Reverse (-)
25303764 .. 25305249
1486 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44451

Sequence Viewer

Length: 1107 bp
ATGGAAAGAGTGGAAGAGAAGCTCAACTTTCACCACTTTAGCCATGAACATTCACTAGAGCAAACCAATTCACCTCTCAAGCAAAACAATACATGTGCAGGCTGCAAGCTGATGATACTCCGCAATAAGGACTACTACAGCTGCAGAAAATGCCCATTTTTCCTACACCAAATTTGCTACAATATGCCTCGAAAAACTCGGCACCCGGCACATCCAAACCACTATTTGAATCTCCATGCTTCACCTTCAAGCAAAGGAGCTATAAATTGCAAGGCTTGTGGAAAGCATGTTGCCGGCTTTTACTATCATTGCGCGGAATGTGGCCTCTACTACCATAGTTTGTGCTCCATCCTGCCTTTCTCTATTGCAACTTCATCACACCCTCACGCGTTGAAATTGTCATTTTTGCCCCCCTGCGATTTGTGCTGCGATATCTGCAGCGAGCCTGCTTATGATGGATGGATCTATAGGTGTCACATATGTGAGTTTGATGCTCATCTTTCTTGTGGCATTTCTGATCAAAAACTTCTTGACAGTTCTCAAAGTTACAATATTGAAGGCAAGGAGCTATTGCAGTTGGTAAGGCATGGATTTGTAAGAAGTGGATCACATCAGATTACAGAAGCAAACATGCCCGATACCATCGCTCTGAACCCAAGACCACAATTTTTGTATCGAGATTCATCAGCTCCTGTCTCTGAAGACACGACTCTGACTCCGAGTAATCAATTTAGTGATGCATATTTTTCCATAGATTTGGCCAAGTCCTATTCTAATTCACCCTATGCTCAGAAAAACGAAGGGAGGAAAGAAAGTGGTCATCAAGGTCCAAATGGTACCGCTGATTTAGTCCAAGGAACATTTCAGTCCAGCAAGGTCAGCAATAAAGTAGGACCAGAAAACAAATTGAATGAAGCATTCTTGACTCGAAGTGACACACTTACCAGGAAGGAATTAGGCCCAGAGAAGAAGAGAAAACCAATTGAAACCATGGGGAGGTCAAACATCAGAAATCAGAGTACTAAATCGGATACACAAGAGTCAAGCGGTTCATTTTTCCAGATGCTCTGTGGGTGCTGCAATCCGGGATATGAAAGAAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

368

Amino Acids

41.43

Weight (kDa)

8.18

Isoelectric Point (pI)

56.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 13 - 59 8.1e-08 C1 domain
C1_2 PF03107 70 - 115 3.5e-08 C1 domain
C1_2 PF03107 126 - 169 3.9e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 836
AccB1I GGYRCC 2 cut(s) 201, 836
AccII CGCG 2 cut(s) 314, 389
AciI CCGC 4 cut(s) 121, 314, 840, 1047
AclWI GGATC 2 cut(s) 470, 613
AcoI YGGCCR 1 cut(s) 759
AcsI RAATTY 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 720
AfaI GTAC 2 cut(s) 838, 1021
AfiI CCNNNNNNNGG 2 cut(s) 127, 996
AflIII ACRYGT 2 cut(s) 92, 387
AgsI TTSAA 6 cut(s) 229, 249, 394, 557, 910, 986
AjnI CCWGG 1 cut(s) 944
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AleI CACNNNNGTG 1 cut(s) 480
AluBI AGCT 6 cut(s) 22, 109, 141, 260, 568, 689
AluI AGCT 6 cut(s) 22, 109, 141, 260, 568, 689
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 700
AlwI GGATC 2 cut(s) 470, 613
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 3 cut(s) 322, 759, 958
ApeKI GCWGC 5 cut(s) 102, 141, 426, 438, 1077
ApoI RAATTY 1 cut(s) 171
Asp718I GGTACC 1 cut(s) 836
AspLEI GCGC 1 cut(s) 314
AspS9I GGNCC 3 cut(s) 827, 893, 959
AsuC2I CCSGG 2 cut(s) 206, 1086
AsuHPI GGTGA 4 cut(s) 23, 63, 234, 771
AvaII GGWCC 2 cut(s) 827, 893
BalI TGGCCA 1 cut(s) 761
BanI GGYRCC 2 cut(s) 201, 836
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 5 cut(s) 89, 128, 413, 450, 1064
BccI CCATC 4 cut(s) 356, 449, 453, 650
BciT130I CCWGG 1 cut(s) 946
BciVI GTATCC 1 cut(s) 1024
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 2 cut(s) 206, 1086
BcoDI GTCTC 1 cut(s) 700
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 4 cut(s) 136, 142, 436, 466
BfuI GTATCC 1 cut(s) 1024
BisI GCNGC 5 cut(s) 103, 142, 427, 439, 1078
BlsI GCNGC 5 cut(s) 104, 143, 428, 440, 1079
BmcAI AGTACT 1 cut(s) 1021
Bme1390I CCNGG 3 cut(s) 206, 946, 1086
Bme18I GGWCC 2 cut(s) 827, 893
BmgT120I GGNCC 3 cut(s) 827, 893, 959
BmiI GGNNCC 2 cut(s) 203, 838
BmrFI CCNGG 3 cut(s) 206, 946, 1086
BmsI GCATC 3 cut(s) 481, 727, 1053
BpiI GAAGAC 1 cut(s) 708
BpuEI CTTGAG 1 cut(s) 62
BpuMI CCSGG 2 cut(s) 206, 1086
BsaBI GATNNNNATC 1 cut(s) 495
BsaJI CCNNGG 2 cut(s) 853, 990
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 996
Bse118I RCCGGY 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 307
Bse8I GATNNNNATC 1 cut(s) 495
BseBI CCWGG 1 cut(s) 946
BseDI CCNNGG 2 cut(s) 853, 990
BseGI GGATG 3 cut(s) 211, 348, 464
BseJI GATNNNNATC 1 cut(s) 495
BseLI CCNNNNNNNGG 2 cut(s) 127, 996
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 803
BseXI GCAGC 5 cut(s) 89, 128, 413, 450, 1064
BsgI GTGCAG 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 314, 389
BshFI GGCC 3 cut(s) 324, 761, 960
BshNI GGYRCC 2 cut(s) 201, 836
BsiHKAI GWGCWC 1 cut(s) 347
BsiSI CCGG 3 cut(s) 206, 294, 1085
BslI CCNNNNNNNGG 2 cut(s) 127, 996
BsmAI GTCTC 1 cut(s) 700
BsmI GAATGC 1 cut(s) 917
BsnI GGCC 3 cut(s) 324, 761, 960
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 3 cut(s) 462, 517, 605
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 4 cut(s) 121, 314, 840, 1047
BspANI GGCC 3 cut(s) 324, 761, 960
BspCNI CTCAG 1 cut(s) 802
BspFNI CGCG 2 cut(s) 314, 389
BspLI GGNNCC 2 cut(s) 203, 838
BspMAI CTGCAG 2 cut(s) 146, 440
BspPI GGATC 2 cut(s) 470, 613
BspT107I GGYRCC 2 cut(s) 201, 836
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 293
BssAI RCCGGY 1 cut(s) 293
BssECI CCNNGG 2 cut(s) 853, 990
BssMI GATC 3 cut(s) 462, 517, 605
BssT1I CCWWGG 2 cut(s) 853, 990
Bst2UI CCWGG 1 cut(s) 946
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 9, 965
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 5 cut(s) 100, 107, 295, 443, 447
BstDEI CTNAG 1 cut(s) 789
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 3 cut(s) 211, 348, 464
BstFNI CGCG 2 cut(s) 314, 389
BstHHI GCGC 1 cut(s) 314
BstKTI GATC 3 cut(s) 465, 520, 608
BstMAI GTCTC 1 cut(s) 700
BstMBI GATC 3 cut(s) 462, 517, 605
BstMWI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
BstNI CCWGG 1 cut(s) 946
BstNSI RCATGY 3 cut(s) 96, 290, 634
BstSCI CCNGG 3 cut(s) 204, 944, 1084
BstSFI CTRYAG 4 cut(s) 136, 142, 436, 466
BstUI CGCG 2 cut(s) 314, 389
BstV1I GCAGC 5 cut(s) 89, 128, 413, 450, 1064
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 1 cut(s) 462
BstXI CCANNNNNNTGG 1 cut(s) 757
BstYI RGATCY 1 cut(s) 462
BsuI GTATCC 1 cut(s) 1024
BsuRI GGCC 3 cut(s) 324, 761, 960
BtgI CCRYGG 1 cut(s) 990
BtgZI GCGATG 1 cut(s) 628
BtsCI GGATG 3 cut(s) 211, 348, 464
Cac8I GCNNGC 5 cut(s) 100, 107, 295, 443, 447
CaiI CAGNNNCTG 1 cut(s) 692
CfoI GCGC 1 cut(s) 314
Cfr10I RCCGGY 1 cut(s) 293
Cfr13I GGNCC 3 cut(s) 827, 893, 959
Csp6I GTAC 2 cut(s) 837, 1020
CspCI CAANNNNNGTGG 4 cut(s) 259, 294, 651, 686
CviAII CATG 7 cut(s) 44, 93, 236, 287, 587, 631, 991
CviQI GTAC 2 cut(s) 837, 1020
DdeI CTNAG 1 cut(s) 789
DpnI GATC 3 cut(s) 464, 519, 607
DpnII GATC 3 cut(s) 462, 517, 605
EaeI YGGCCR 1 cut(s) 759
Eam1104I CTCTTC 2 cut(s) 9, 965
EarI CTCTTC 2 cut(s) 9, 965
Eco130I CCWWGG 2 cut(s) 853, 990
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 2 cut(s) 827, 893
Eco57I CTGAAG 1 cut(s) 720
EcoRII CCWGG 1 cut(s) 944
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 2 cut(s) 853, 990
EcoT22I ATGCAT 1 cut(s) 742
ErhI CCWWGG 2 cut(s) 853, 990
FaeI CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
FalI AAGNNNNNCTT 2 cut(s) 11, 43
FatI CATG 7 cut(s) 43, 92, 235, 286, 586, 630, 990
FauNDI CATATG 1 cut(s) 479
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 5 cut(s) 103, 142, 427, 439, 1078
FokI GGATG 3 cut(s) 198, 335, 471
Fsp4HI GCNGC 5 cut(s) 103, 142, 427, 439, 1078
FspBI CTAG 1 cut(s) 56
GlaI GCGC 1 cut(s) 313
GluI GCNGC 5 cut(s) 103, 142, 427, 439, 1078
HaeIII GGCC 3 cut(s) 324, 761, 960
HapII CCGG 3 cut(s) 206, 294, 1085
HhaI GCGC 1 cut(s) 314
Hin1II CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
Hin6I GCGC 1 cut(s) 312
HinP1I GCGC 1 cut(s) 312
HinfI GANTC 6 cut(s) 229, 680, 709, 715, 925, 1040
HpaII CCGG 3 cut(s) 206, 294, 1085
HphI GGTGA 4 cut(s) 23, 63, 234, 771
Hpy188III TCNNGA 4 cut(s) 530, 677, 922, 1060
HpyAV CCTTC 4 cut(s) 255, 551, 794, 943
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4V TGCA 9 cut(s) 98, 105, 144, 270, 368, 438, 574, 740, 1080
HpyF10VI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
HpyF3I CTNAG 1 cut(s) 789
Hsp92II CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
HspAI GCGC 1 cut(s) 312
KpnI GGTACC 1 cut(s) 840
KroI GCCGGC 1 cut(s) 293
KroNI GCCGGC 1 cut(s) 295
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 462, 517, 605
LmnI GCTCC 4 cut(s) 257, 350, 565, 694
Lsp1109I GCAGC 5 cut(s) 89, 128, 413, 450, 1064
LweI GCATC 3 cut(s) 481, 727, 1053
MaeI CTAG 1 cut(s) 56
MaeIII GTNAC 3 cut(s) 473, 545, 932
MalI GATC 3 cut(s) 464, 519, 607
MboI GATC 3 cut(s) 462, 517, 605
MboII GAAGA 4 cut(s) 26, 713, 979, 982
MfeI CAATTG 1 cut(s) 981
MflI RGATCY 1 cut(s) 462
MhlI GDGCHC 1 cut(s) 347
MlsI TGGCCA 1 cut(s) 761
MluI ACGCGT 1 cut(s) 387
MluNI TGGCCA 1 cut(s) 761
MlyI GAGTC 4 cut(s) 703, 709, 919, 1049
MnlI CCTC 6 cut(s) 84, 198, 335, 393, 798, 990
Mox20I TGGCCA 1 cut(s) 761
Mph1103I ATGCAT 1 cut(s) 742
MroNI GCCGGC 1 cut(s) 293
MscI TGGCCA 1 cut(s) 761
MslI CAYNNNNRTG 1 cut(s) 480
Msp20I TGGCCA 1 cut(s) 761
MspA1I CMGCKG 2 cut(s) 141, 842
MspI CCGG 3 cut(s) 206, 294, 1085
MspR9I CCNGG 3 cut(s) 206, 946, 1086
MunI CAATTG 1 cut(s) 981
Mva1269I GAATGC 1 cut(s) 917
MvaI CCWGG 1 cut(s) 946
MvnI CGCG 2 cut(s) 314, 389
MwoI GCNNNNNNNGC 4 cut(s) 150, 423, 435, 879
NaeI GCCGGC 1 cut(s) 295
NciI CCSGG 2 cut(s) 206, 1086
NcoI CCATGG 1 cut(s) 990
NdeI CATATG 1 cut(s) 479
NdeII GATC 3 cut(s) 462, 517, 605
NgoMIV GCCGGC 1 cut(s) 293
NlaIII CATG 7 cut(s) 47, 96, 239, 290, 590, 634, 994
NlaIV GGNNCC 2 cut(s) 203, 838
NmeAIII GCCGAG 1 cut(s) 178
NmuCI GTSAC 2 cut(s) 473, 932
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 3 cut(s) 96, 290, 634
OliI CACNNNNGTG 1 cut(s) 480
PciI ACATGT 1 cut(s) 92
PctI GAATGC 1 cut(s) 917
PdiI GCCGGC 1 cut(s) 295
PfeI GAWTC 2 cut(s) 229, 680
PfoI TCCNGGA 1 cut(s) 1084
PkrI GCNGC 5 cut(s) 104, 143, 428, 440, 1079
PleI GAGTC 4 cut(s) 703, 709, 919, 1048
PpsI GAGTC 4 cut(s) 703, 709, 919, 1048
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 944
PspGI CCWGG 1 cut(s) 944
PspN4I GGNNCC 2 cut(s) 203, 838
PspPI GGNCC 3 cut(s) 827, 893, 959
PstI CTGCAG 2 cut(s) 146, 440
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 462
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 2 cut(s) 838, 1021
RsaNI GTAC 2 cut(s) 837, 1020
RseI CAYNNNNRTG 1 cut(s) 480
SatI GCNGC 5 cut(s) 103, 142, 427, 439, 1078
Sau3AI GATC 3 cut(s) 462, 517, 605
Sau96I GGNCC 3 cut(s) 827, 893, 959
ScaI AGTACT 1 cut(s) 1021
SchI GAGTC 4 cut(s) 703, 709, 919, 1049
ScrFI CCNGG 3 cut(s) 206, 946, 1086
SduI GDGCHC 1 cut(s) 347
SfaNI GCATC 3 cut(s) 481, 727, 1053
SfcI CTRYAG 4 cut(s) 136, 142, 436, 466
SinI GGWCC 2 cut(s) 827, 893
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SsiI CCGC 4 cut(s) 121, 314, 840, 1047
SspI AATATT 1 cut(s) 553
SspMI CTAG 1 cut(s) 56
StyD4I CCNGG 3 cut(s) 204, 944, 1084
StyI CCWWGG 2 cut(s) 853, 990
TaaI ACNGT 1 cut(s) 536
TaqI TCGA 3 cut(s) 190, 676, 928
TatI WGTACW 1 cut(s) 1019
TfiI GAWTC 2 cut(s) 229, 680
TseFI GTSAC 2 cut(s) 473, 932
TseI GCWGC 5 cut(s) 102, 141, 426, 438, 1077
Tsp45I GTSAC 2 cut(s) 473, 932
TspDTI ATGAA 6 cut(s) 60, 363, 672, 927, 1041, 1107
VpaK11BI GGWCC 2 cut(s) 827, 893
XapI RAATTY 1 cut(s) 171
XceI RCATGY 3 cut(s) 96, 290, 634
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XspI CTAG 1 cut(s) 56
ZrmI AGTACT 1 cut(s) 1021
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.