Rorug03G0175200

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013896
Physical Location & Seq
Forward (+)
14835699 .. 14837423
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0175200.1

Sequence Viewer

Length: 975 bp
ATGAACTTTTCTCTCTGCCTCCAAACAGATCTCCCAGTTTTAAATTTCACAAAAGTCGAATCATTTCTTCAACCAGATTTCAGACACCTCTGGTTTAGTAATCTCAATCTCTCTATTACAAGTGCAATGGCTTCAGAATCCCATGATCAGCTTCACTTTGTTTTGATACCACTAATGTCTCCAGGCCACCTTATACCAATGGCAGACACGGCTAAGCTTTTGGCACAGCATGGTCTGGTGGTCACAATTATCACCACACCCCTCAATGCCATTGGAATCAAACCGATCATTGACCTTGGCATTGATTCCGGTCTCTCCCTTCATCTGGTCCAGTTCAGTTTGCCACTTGCTGAGTGTTGTTTGCCAGAGGGATGTGAAACAATGGAATCAGTCCCTGCAAGAAACTTGTTTCAGAATTTCTTTGATGCAGTTAGCAGGCTGCAGCAACCAGTAGAACAATTACTTGAGACACTAAAACCTATGCCGAGCTGCATAATCTCAGATAAACATCTTCCATGGACAGATTTCCACAGAAAAGTAGAGGAAGCTACAAAAGGATCATGTGGAGTTGTTGTGAATAGCTTTGAGCAGTTGGAAACAGAGTATGTCAAAGAGTATAGAAAGGTCAGTAACGTGTGGAGTATTGGTCCAGTGTCACTTTCCAACAACACAAACTTGGACAAAGCTCAAAGAGGCAACAAGGCCTGCATTGATCAAAACCAGTGCTTGAGATGGCTTGATTCATGGCCTGAGGACTCAGTTGTTTATGTATGTCTTGGAAGCCTTGGCCGTATTGCAACTCCTCATTTAGAAGCATCAAACCGGCCTTTCATTTGGGTGATCAGCGGGAACAAAACAGTAGAATGGGGAAAATGGTTGTTGGAAGATGGATTTGAGGACGGGATTAAAGGTAGAGGTGATCATGATTCATTTCAATTAGCAATTATAATTTCAATATGTGGTCAAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

324

Amino Acids

36.2

Weight (kDa)

5.18

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013896)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42060
fragaria_vesca FvH4_6g05691 FvH4_6g22090
malus_domestica MD12G1056300.v1.1 MD14G1055700.v1.1
prunus_persica Prupe.7G078900_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0479421
rosa_laevigata RLG00000023576
rosa_multiflora Rmu_sc0000107.1_g000006
rosa_roxburghii Rroxscaffold_6G00402290
rosa_rugosa Rorug03G0175200
rosa_samantha Rh3AG226500 Rh3BG259400 Rh3CG255300 Rh3DG250800 Rh3DG250900
rosa_wichuraiana Rw3G020200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 947
AciI CCGC 1 cut(s) 846
AclWI GGATC 1 cut(s) 565
AcoI YGGCCR 1 cut(s) 787
AcsI RAATTY 3 cut(s) 43, 415, 969
AcuI CTGAAG 1 cut(s) 117
AfiI CCNNNNNNNGG 1 cut(s) 325
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 3 cut(s) 71, 935, 954
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 6 cut(s) 151, 217, 489, 548, 582, 686
AluI AGCT 6 cut(s) 151, 217, 489, 548, 582, 686
Alw26I GTCTC 3 cut(s) 183, 317, 461
AlwI GGATC 1 cut(s) 565
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 5 cut(s) 184, 702, 746, 787, 824
ApeKI GCWGC 3 cut(s) 439, 442, 489
ApoI RAATTY 3 cut(s) 43, 415, 969
Asp700I GAANNNNTTC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 328, 647
AsuHPI GGTGA 3 cut(s) 244, 850, 929
AvaII GGWCC 2 cut(s) 328, 647
AxyI CCTNAGG 1 cut(s) 750
BbvI GCAGC 3 cut(s) 426, 454, 476
BccI CCATC 2 cut(s) 726, 881
BceAI ACGGC 2 cut(s) 225, 774
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 4 cut(s) 145, 712, 840, 919
BcoDI GTCTC 3 cut(s) 183, 317, 461
BfmI CTRYAG 1 cut(s) 440
BglII AGATCT 1 cut(s) 28
BisI GCNGC 3 cut(s) 440, 443, 490
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 3 cut(s) 441, 444, 491
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 328, 647
BmgT120I GGNCC 2 cut(s) 328, 647
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 2 cut(s) 415, 824
BmuI ACTGGG 1 cut(s) 29
BpmI CTGGAG 1 cut(s) 165
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 2 cut(s) 485, 748
BsaBI GATNNNNATC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 295, 515, 784
BsaWI WCCGGW 1 cut(s) 308
BsaXI ACNNNNNCTCC 4 cut(s) 558, 588, 631, 661
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 822
Bse1I ACTGG 5 cut(s) 35, 331, 449, 650, 721
Bse21I CCTNAGG 1 cut(s) 750
Bse3DI GCAATG 1 cut(s) 132
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 3 cut(s) 295, 515, 784
BseGI GGATG 1 cut(s) 377
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 4 cut(s) 342, 513, 741, 771
BseNI ACTGG 5 cut(s) 35, 331, 449, 650, 721
BseRI GAGGAG 1 cut(s) 792
BseXI GCAGC 3 cut(s) 426, 454, 476
BshFI GGCC 5 cut(s) 186, 704, 748, 789, 826
BsiSI CCGG 2 cut(s) 309, 823
BslFI GGGAC 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 3 cut(s) 183, 317, 461
BsmFI GGGAC 1 cut(s) 377
BsnI GGCC 5 cut(s) 186, 704, 748, 789, 826
Bso31I GGTCTC 1 cut(s) 317
Bsp143I GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
Bsp1720I GCTNAGC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 1 cut(s) 846
BspANI GGCC 5 cut(s) 186, 704, 748, 789, 826
BspCNI CTCAG 4 cut(s) 343, 512, 742, 770
BspHI TCATGA 1 cut(s) 922
BspMAI CTGCAG 1 cut(s) 444
BspPI GGATC 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 822
BsrI ACTGG 5 cut(s) 35, 331, 449, 650, 721
BssAI RCCGGY 1 cut(s) 822
BssECI CCNNGG 3 cut(s) 295, 515, 784
BssMI GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
BssT1I CCWWGG 3 cut(s) 295, 515, 784
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 859
BstC8I GCNNGC 2 cut(s) 437, 706
BstDEI CTNAG 5 cut(s) 213, 351, 499, 750, 757
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 1 cut(s) 377
BstKTI GATC 7 cut(s) 31, 148, 288, 560, 715, 843, 922
BstMAI GTCTC 3 cut(s) 183, 317, 461
BstMBI GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 440
BstV1I GCAGC 3 cut(s) 426, 454, 476
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
Bsu36I CCTNAGG 1 cut(s) 750
BsuRI GGCC 5 cut(s) 186, 704, 748, 789, 826
BtgI CCRYGG 1 cut(s) 515
BtsCI GGATG 1 cut(s) 377
BtsIMutI CAGTG 2 cut(s) 657, 728
Cac8I GCNNGC 2 cut(s) 437, 706
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 922
Cfr10I RCCGGY 1 cut(s) 822
Cfr13I GGNCC 2 cut(s) 328, 647
CviAII CATG 6 cut(s) 143, 230, 516, 561, 744, 923
DdeI CTNAG 5 cut(s) 213, 351, 499, 750, 757
DpnI GATC 7 cut(s) 30, 147, 287, 559, 714, 842, 921
DpnII GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
DraI TTTAAA 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 787
Eco130I CCWWGG 3 cut(s) 295, 515, 784
Eco147I AGGCCT 1 cut(s) 704
Eco31I GGTCTC 1 cut(s) 317
Eco47I GGWCC 2 cut(s) 328, 647
Eco57I CTGAAG 1 cut(s) 117
Eco81I CCTNAGG 1 cut(s) 750
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 3 cut(s) 295, 515, 784
ErhI CCWWGG 3 cut(s) 295, 515, 784
FaeI CATG 6 cut(s) 146, 233, 519, 564, 747, 926
FaqI GGGAC 1 cut(s) 377
FatI CATG 6 cut(s) 142, 229, 515, 560, 743, 922
FauI CCCGC 1 cut(s) 839
FbaI TGATCA 4 cut(s) 145, 712, 840, 919
Fnu4HI GCNGC 3 cut(s) 440, 443, 490
FokI GGATG 1 cut(s) 384
Fsp4HI GCNGC 3 cut(s) 440, 443, 490
GluI GCNGC 3 cut(s) 440, 443, 490
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 5 cut(s) 186, 704, 748, 789, 826
HapII CCGG 2 cut(s) 309, 823
Hin1II CATG 6 cut(s) 146, 233, 519, 564, 747, 926
HindIII AAGCTT 1 cut(s) 215
HinfI GANTC 8 cut(s) 59, 137, 276, 305, 386, 740, 755, 926
HpaII CCGG 2 cut(s) 309, 823
HphI GGTGA 3 cut(s) 244, 850, 929
Hpy188I TCNGA 4 cut(s) 83, 136, 414, 502
Hpy188III TCNNGA 2 cut(s) 923, 965
HpyAV CCTTC 1 cut(s) 329
HpyCH4III ACNGT 1 cut(s) 859
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 7 cut(s) 125, 398, 428, 442, 492, 708, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 5 cut(s) 213, 351, 499, 750, 757
HpySE526I ACGT 1 cut(s) 633
Hsp92II CATG 6 cut(s) 146, 233, 519, 564, 747, 926
Ksp22I TGATCA 4 cut(s) 145, 712, 840, 919
Kzo9I GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
Lsp1109I GCAGC 3 cut(s) 426, 454, 476
LweI GCATC 2 cut(s) 415, 824
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 3 cut(s) 241, 629, 654
MalI GATC 7 cut(s) 30, 147, 287, 559, 714, 842, 921
MboI GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
MboII GAAGA 3 cut(s) 59, 503, 896
MflI RGATCY 1 cut(s) 28
MluCI AATT 8 cut(s) 43, 246, 415, 458, 935, 942, 948, 969
MlyI GAGTC 1 cut(s) 749
MmeI TCCRAC 3 cut(s) 573, 687, 861
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 2 cut(s) 41, 906
MslI CAYNNNNRTG 1 cut(s) 836
MspA1I CMGCKG 1 cut(s) 846
MspI CCGG 2 cut(s) 309, 823
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 209
NcoI CCATGG 1 cut(s) 515
NdeII GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
NlaIII CATG 6 cut(s) 146, 233, 519, 564, 747, 926
NmeAIII GCCGAG 1 cut(s) 510
NmuCI GTSAC 2 cut(s) 241, 654
PagI TCATGA 1 cut(s) 922
PceI AGGCCT 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 63
PfeI GAWTC 7 cut(s) 59, 137, 276, 305, 386, 740, 926
PkrI GCNGC 3 cut(s) 441, 444, 491
PleI GAGTC 1 cut(s) 749
PpsI GAGTC 1 cut(s) 749
PsiI TTATAA 1 cut(s) 947
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 2 cut(s) 328, 647
PstI CTGCAG 1 cut(s) 444
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 836
SaqAI TTAA 2 cut(s) 41, 906
SatI GCNGC 3 cut(s) 440, 443, 490
Sau3AI GATC 7 cut(s) 28, 145, 285, 557, 712, 840, 919
Sau96I GGNCC 2 cut(s) 328, 647
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 1 cut(s) 183
SfaNI GCATC 2 cut(s) 415, 824
SfcI CTRYAG 1 cut(s) 440
SinI GGWCC 2 cut(s) 328, 647
SmiMI CAYNNNNRTG 1 cut(s) 836
SmlI CTYRAG 2 cut(s) 464, 727
SmoI CTYRAG 2 cut(s) 464, 727
Sse9I AATT 8 cut(s) 43, 246, 415, 458, 935, 942, 948, 969
SseBI AGGCCT 1 cut(s) 704
SsiI CCGC 1 cut(s) 846
StuI AGGCCT 1 cut(s) 704
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 3 cut(s) 295, 515, 784
TaaI ACNGT 1 cut(s) 859
TaiI ACGT 1 cut(s) 636
TaqI TCGA 1 cut(s) 57
TasI AATT 8 cut(s) 43, 246, 415, 458, 935, 942, 948, 969
TfiI GAWTC 7 cut(s) 59, 137, 276, 305, 386, 740, 926
Tru1I TTAA 2 cut(s) 41, 906
Tru9I TTAA 2 cut(s) 41, 906
TscAI CASTG 2 cut(s) 657, 728
TseFI GTSAC 2 cut(s) 241, 654
TseI GCWGC 3 cut(s) 439, 442, 489
Tsp45I GTSAC 2 cut(s) 241, 654
TspDTI ATGAA 5 cut(s) 17, 311, 732, 820, 918
TspRI CASTG 2 cut(s) 657, 728
VpaK11BI GGWCC 2 cut(s) 328, 647
XapI RAATTY 3 cut(s) 43, 415, 969
XmnI GAANNNNTTC 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.