AT2G42180

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011942
Physical Location & Seq
Reverse (-)
17580917 .. 17581956
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42180.1

Sequence Viewer

Length: 501 bp
ATGCAGCTCAAAAGGTCATCATCTTCTTCCCACTCCACGAATCTCAAAACCCTATTCATAAATCTCATCACACACTCTCTTTACCGTCTTTTACGGTCTCTCTCAAGAGCCAGATCCGTTCTGATAGAGATTTCGAAACACAACAAGAAGAGGTTATTCATGATGATGTTTTACACGACAAAGTCATCCATGAACCAACACAACATCTTCTTTGGATCCTCCCATGTCGTTGTTCCCGTCACTAAACCTTTCCCTTTCTCCCTTGATGGTCATGTTGAAGATGAGGATAATCTTGAGTCTCAATACCTCCAGTGGCTCGAAGAGAGAGTTGATGAGAATAATAACATTAATGATGATCAGAGTGTTGGGGAGAGAGATGTTGGTGATGATGATATTGATCGTCTGGCAGATAAATTCATCGCGAGGTGTCATGAGAAGTTCTTGCTGGAGAAGGTTGAATCTTACAGGAGATTCCAAGATATGTTGGCGAGGAGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

166

Amino Acids

19.52

Weight (kDa)

6.66

Isoelectric Point (pI)

63.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 129 - 164 2.9e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 422
AclWI GGATC 3 cut(s) 108, 210, 223
AcsI RAATTY 1 cut(s) 413
AgsI TTSAA 2 cut(s) 278, 458
AluBI AGCT 1 cut(s) 7
AluI AGCT 1 cut(s) 7
Alw26I GTCTC 2 cut(s) 102, 303
AlwI GGATC 3 cut(s) 108, 210, 223
ApeKI GCWGC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 413
AseI ATTAAT 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 395
AsuII TTCGAA 1 cut(s) 134
BamHI GGATCC 1 cut(s) 215
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 260
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 2 cut(s) 102, 303
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 217
BpmI CTGGAG 2 cut(s) 293, 467
Bpu14I TTCGAA 1 cut(s) 134
BpuEI CTTGAG 2 cut(s) 88, 314
BsaBI GATNNNNATC 1 cut(s) 396
BsaI GGTCTC 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 396
BseGI GGATG 1 cut(s) 185
BseJI GATNNNNATC 1 cut(s) 396
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 1 cut(s) 16
Bsh1236I CGCG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 102, 303
Bso31I GGTCTC 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 134
Bsp143I GATC 4 cut(s) 113, 215, 355, 397
Bsp68I TCGCGA 1 cut(s) 422
BspFNI CGCG 1 cut(s) 422
BspHI TCATGA 2 cut(s) 159, 430
BspLI GGNNCC 1 cut(s) 217
BspPI GGATC 3 cut(s) 108, 210, 223
BspT104I TTCGAA 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 102
BsrI ACTGG 1 cut(s) 310
BssMI GATC 4 cut(s) 113, 215, 355, 397
Bst4CI ACNGT 2 cut(s) 86, 96
Bst6I CTCTTC 2 cut(s) 143, 315
BstBI TTCGAA 1 cut(s) 134
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 4 cut(s) 116, 218, 358, 400
BstMAI GTCTC 2 cut(s) 102, 303
BstMBI GATC 4 cut(s) 113, 215, 355, 397
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 2 cut(s) 113, 215
BstYI RGATCY 2 cut(s) 113, 215
BtgZI GCGATG 1 cut(s) 403
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 317
BtuMI TCGCGA 1 cut(s) 422
CciI TCATGA 2 cut(s) 159, 430
CviAII CATG 5 cut(s) 160, 190, 224, 272, 431
CviJI RGCY 3 cut(s) 7, 110, 316
CviKI_1 RGCY 3 cut(s) 7, 110, 316
DpnI GATC 4 cut(s) 115, 217, 357, 399
DpnII GATC 4 cut(s) 113, 215, 355, 397
Eam1104I CTCTTC 2 cut(s) 143, 315
EarI CTCTTC 2 cut(s) 143, 315
Eco31I GGTCTC 1 cut(s) 102
FaeI CATG 5 cut(s) 163, 193, 227, 275, 434
FaiI YATR 7 cut(s) 59, 161, 191, 225, 273, 432, 482
FatI CATG 5 cut(s) 159, 189, 223, 271, 430
FbaI TGATCA 1 cut(s) 355
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 5
GluI GCNGC 1 cut(s) 5
GsuI CTGGAG 2 cut(s) 293, 467
Hin1II CATG 5 cut(s) 163, 193, 227, 275, 434
HinfI GANTC 4 cut(s) 40, 296, 458, 471
HphI GGTGA 1 cut(s) 395
Hpy188I TCNGA 2 cut(s) 123, 360
Hpy188III TCNNGA 5 cut(s) 105, 160, 293, 421, 431
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 2 cut(s) 86, 96
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 5 cut(s) 163, 193, 227, 275, 434
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 4 cut(s) 113, 215, 355, 397
LpnPI CCDG 5 cut(s) 124, 323, 389, 431, 451
Lsp1109I GCAGC 1 cut(s) 16
MaeIII GTNAC 1 cut(s) 238
MalI GATC 4 cut(s) 115, 217, 357, 399
MboI GATC 4 cut(s) 113, 215, 355, 397
MboII GAAGA 6 cut(s) 15, 18, 160, 199, 290, 332
MflI RGATCY 2 cut(s) 113, 215
MluCI AATT 1 cut(s) 413
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 6 cut(s) 144, 229, 277, 317, 417, 483
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 1 cut(s) 164
MvnI CGCG 1 cut(s) 422
NdeII GATC 4 cut(s) 113, 215, 355, 397
NlaIII CATG 5 cut(s) 163, 193, 227, 275, 434
NlaIV GGNNCC 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 238
NruI TCGCGA 1 cut(s) 422
NspV TTCGAA 1 cut(s) 134
PagI TCATGA 2 cut(s) 159, 430
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 3 cut(s) 40, 458, 471
PflFI GACNNNGTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PshBI ATTAAT 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 217
PsuI RGATCY 2 cut(s) 113, 215
PsyI GACNNNGTC 1 cut(s) 181
RruI TCGCGA 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 4 cut(s) 113, 215, 355, 397
SchI GAGTC 1 cut(s) 305
SetI ASST 7 cut(s) 9, 17, 155, 250, 309, 428, 456
SfuI TTCGAA 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 103, 293
SmoI CTYRAG 2 cut(s) 103, 293
Sse9I AATT 1 cut(s) 413
TaaI ACNGT 2 cut(s) 86, 96
TaqI TCGA 2 cut(s) 134, 318
TasI AATT 1 cut(s) 413
TfiI GAWTC 3 cut(s) 40, 458, 471
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 46, 148, 206, 406
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 317
Tth111I GACNNNGTC 1 cut(s) 181
VspI ATTAAT 1 cut(s) 348
XapI RAATTY 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.