Rw3G020780

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011942
Physical Location & Seq
Reverse (-)
24844238 .. 24845338
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020780.1

Sequence Viewer

Length: 648 bp
ATGGTTGGACCCTCCAATCTAAAAACCCTCCCTCCCATCCAAGTTTTCTCCACCTTATCACGACCACCATCGTCTTCTTCCTCAAGCTCCATGACAAAGCTCAAAACCCTCATCCACACCCTCATCTTCTCCCACGTGTGCCGCGCAATTCGGTATCTCAACAAAGCCAAATCCAAAACCATATCCTTTTTCATTCAAATCATTAAGGAGAGCCAGCCCATGCAACTGATTTACCCCACAAAGAAGAGCAAGAGCAAGAACAAGAACAAGATCTTCTTCGGCTCGTTCCGGCTGCACTACAACTGGTGCTCCTCCACGCACGTTCTTCCCGTGCCAGCCCGCGTCTACGAGGGTCTCACATCAACAAGCCATTTGTACTACGATTCGAATTGGAATTCCGTAATTTCAACCGAGGAGCAATGCGGCGGTCATGATCAGGACAGCGGCGAGTCGCAGCTTTCGGGGTACCTCCAATGGCTGGAGGAAAACAAGGTGCATGAAAAATCCATGGCTCAGGCTGATGAGACAGATGAGAATGAGATTGATAAGCTGGCCGATTTGTTCATTGCGAGCTGTCATGAAAAGTTCATGTTGGAGAAGCAGGAGTCCTACAGGAGATTCCAGGAAATGCTTGCCAGAAGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

215

Amino Acids

24.63

Weight (kDa)

8.79

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 178 - 213 6.6e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 144, 342
AciI CCGC 5 cut(s) 142, 340, 423, 426, 444
AcoI YGGCCR 1 cut(s) 552
AcsI RAATTY 1 cut(s) 394
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 377, 467
AfiI CCNNNNNNNGG 1 cut(s) 478
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 2 cut(s) 197, 408
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 5 cut(s) 87, 100, 457, 550, 573
AluI AGCT 5 cut(s) 87, 100, 457, 550, 573
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 359, 518
AoxI GGCC 1 cut(s) 552
ApeKI GCWGC 2 cut(s) 292, 454
ApoI RAATTY 1 cut(s) 394
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 2 cut(s) 146, 644
AspS9I GGNCC 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 465
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 279, 466
BccI CCATC 2 cut(s) 44, 76
BciT130I CCWGG 1 cut(s) 623
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 359, 518
BfmI CTRYAG 1 cut(s) 610
BglII AGATCT 1 cut(s) 270
BisI GCNGC 5 cut(s) 142, 293, 424, 445, 455
BlsI GCNGC 5 cut(s) 143, 294, 425, 446, 456
Bme1390I CCNGG 1 cut(s) 623
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 10, 467
BmrFI CCNGG 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 411, 507
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 425, 564
BseBI CCWGG 1 cut(s) 623
BseDI CCNNGG 2 cut(s) 411, 507
BseGI GGATG 2 cut(s) 36, 111
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 2 cut(s) 425, 564
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 2 cut(s) 301, 428
BseXI GCAGC 2 cut(s) 279, 466
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 2 cut(s) 144, 342
BshFI GGCC 1 cut(s) 554
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 359, 518
BsnI GGCC 1 cut(s) 554
Bso31I GGTCTC 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 270, 433
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 5 cut(s) 142, 340, 423, 426, 444
BspANI GGCC 1 cut(s) 554
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 2 cut(s) 144, 342
BspHI TCATGA 2 cut(s) 430, 577
BspLI GGNNCC 2 cut(s) 10, 467
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 465
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 425, 564
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 411, 507
BssMI GATC 2 cut(s) 270, 433
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 623
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 6 cut(s) 215, 336, 340, 552, 571, 633
BstDEI CTNAG 1 cut(s) 513
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 2 cut(s) 36, 111
BstFNI CGCG 2 cut(s) 144, 342
BstHHI GCGC 2 cut(s) 146, 644
BstKTI GATC 2 cut(s) 273, 436
BstMAI GTCTC 2 cut(s) 359, 518
BstMBI GATC 2 cut(s) 270, 433
BstMWI GCNNNNNNNGC 1 cut(s) 641
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 621
BstSFI CTRYAG 1 cut(s) 610
BstUI CGCG 2 cut(s) 144, 342
BstV1I GCAGC 2 cut(s) 279, 466
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 1 cut(s) 554
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 2 cut(s) 36, 111
Cac8I GCNNGC 6 cut(s) 215, 336, 340, 552, 571, 633
CciI TCATGA 2 cut(s) 430, 577
CfoI GCGC 2 cut(s) 146, 644
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 376, 466
CviAII CATG 8 cut(s) 91, 220, 431, 497, 508, 578, 589, 645
CviQI GTAC 2 cut(s) 376, 466
DdeI CTNAG 1 cut(s) 513
DpnI GATC 2 cut(s) 272, 435
DpnII GATC 2 cut(s) 270, 433
EaeI YGGCCR 1 cut(s) 552
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 8
Eco72I CACGTG 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 8 cut(s) 94, 223, 434, 500, 511, 581, 592, 648
FaiI YATR 9 cut(s) 92, 182, 221, 432, 498, 509, 579, 590, 646
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 8 cut(s) 90, 219, 430, 496, 507, 577, 588, 644
FauI CCCGC 1 cut(s) 347
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 142, 293, 424, 445, 455
FokI GGATG 2 cut(s) 23, 98
Fsp4HI GCNGC 5 cut(s) 142, 293, 424, 445, 455
GlaI GCGC 2 cut(s) 145, 643
GluI GCNGC 5 cut(s) 142, 293, 424, 445, 455
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 1 cut(s) 554
HapII CCGG 1 cut(s) 289
HgaI GACGC 1 cut(s) 331
HhaI GCGC 2 cut(s) 146, 644
Hin1II CATG 8 cut(s) 94, 223, 434, 500, 511, 581, 592, 648
Hin6I GCGC 2 cut(s) 144, 642
HinP1I GCGC 2 cut(s) 144, 642
HinfI GANTC 4 cut(s) 383, 449, 605, 618
HpaII CCGG 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 60, 431, 437, 578
Hpy8I GTNNAC 1 cut(s) 346
HpyCH4IV ACGT 2 cut(s) 135, 321
HpyCH4V TGCA 3 cut(s) 223, 295, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 641
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 2 cut(s) 135, 321
Hsp92II CATG 8 cut(s) 94, 223, 434, 500, 511, 581, 592, 648
HspAI GCGC 2 cut(s) 144, 642
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 270, 433
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 3 cut(s) 92, 314, 415
Lsp1109I GCAGC 2 cut(s) 279, 466
MaeII ACGT 2 cut(s) 135, 321
MalI GATC 2 cut(s) 272, 435
MboI GATC 2 cut(s) 270, 433
MboII GAAGA 7 cut(s) 66, 69, 118, 256, 265, 268, 317
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 4 cut(s) 147, 388, 394, 402
MlyI GAGTC 2 cut(s) 458, 614
MmeI TCCRAC 1 cut(s) 573
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 2 cut(s) 144, 342
MwoI GCNNNNNNNGC 1 cut(s) 641
NcoI CCATGG 1 cut(s) 507
NdeII GATC 2 cut(s) 270, 433
NlaIII CATG 8 cut(s) 94, 223, 434, 500, 511, 581, 592, 648
NlaIV GGNNCC 2 cut(s) 10, 467
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 2 cut(s) 430, 577
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 2 cut(s) 383, 618
PflMI CCANNNNNTGG 1 cut(s) 478
PfoI TCCNGGA 1 cut(s) 621
PkrI GCNGC 5 cut(s) 143, 294, 425, 446, 456
PleI GAGTC 2 cut(s) 457, 613
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 2 cut(s) 457, 613
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 621
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 2 cut(s) 10, 467
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 2 cut(s) 377, 467
RsaNI GTAC 2 cut(s) 376, 466
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 5 cut(s) 142, 293, 424, 445, 455
Sau3AI GATC 2 cut(s) 270, 433
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 458, 614
ScrFI CCNGG 1 cut(s) 623
SduI GDGCHC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 610
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 4 cut(s) 147, 388, 394, 402
SsiI CCGC 5 cut(s) 142, 340, 423, 426, 444
StyD4I CCNGG 1 cut(s) 621
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 2 cut(s) 138, 324
TaqI TCGA 1 cut(s) 386
TasI AATT 4 cut(s) 147, 388, 394, 402
TatI WGTACW 1 cut(s) 375
TauI GCSGC 3 cut(s) 144, 426, 447
TfiI GAWTC 2 cut(s) 383, 618
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 2 cut(s) 292, 454
TspDTI ATGAA 5 cut(s) 181, 513, 553, 577, 594
TspGWI ACGGA 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.