Rh3BG263400

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0011942
Physical Location & Seq
Reverse (-)
25517788 .. 25519003
1216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG263400.1

Sequence Viewer

Length: 642 bp
ATGGTTGGACCCTCCAATCTAAAAACCCTCCCTCCTCTCCAAGTTTTCTCCACCTTACCACCACCACCATCGTCTTCTTCCTCAAGCTCCATGACGAAGCTCAAAACCCTAATCCACACCCTCATCTTCTCCCACGTGTGCCGCGCAATTCGGTATCTCAACAAAGCCAAATCCAAAACCATATCCTTTTTCATTCAAATCATTAAGGAGAGCCAGCCCATGCAACTGATTTACCCTTCAAAGAAGAGCAGGAGCAAGAACAAGAACAAGATCTTCTTCGGCTCGTTCCGGCTGCACTACAACTGGTGCTCCTCCACGCACGTTCTTCCCGTGCCAGCCCGCGTCTACGAGGGTCTCACATCAACAAGCCATTTGTACTACGATTCGAATTGGAATTCCGTAATTTCAACCGAGGAGCAATGCGGCGGTCATGATCAGGACAGCGGCGAGTCGCAGCTTTCGGGGTACCTCCAATGGCTGGAGGAAAACAAGGTGCATGAAAAATCCATGGCTGATGAGACAGATGAGAATGAGATTGATAAGCTGGCCGATTTGTTCATTGCAAGCTGTCATGAGAAGTTCATGTTGGAGAAGCAGGAGTCCTACAGGAGATTCCAGGAAATGCTTGCCAGAAGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

213

Amino Acids

24.39

Weight (kDa)

8.59

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 176 - 211 6.5e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 478
AccI GTMKAC 1 cut(s) 345
AccII CGCG 2 cut(s) 144, 342
AciI CCGC 5 cut(s) 142, 340, 423, 426, 444
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 1 cut(s) 394
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 377, 467
AfiI CCNNNNNNNGG 1 cut(s) 478
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 3 cut(s) 197, 240, 408
AjnI CCWGG 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 5 cut(s) 87, 100, 457, 544, 567
AluI AGCT 5 cut(s) 87, 100, 457, 544, 567
Alw21I GWGCWC 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 359, 512
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 2 cut(s) 292, 454
ApoI RAATTY 1 cut(s) 394
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 2 cut(s) 146, 638
AspS9I GGNCC 1 cut(s) 8
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 465
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 279, 466
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 1 cut(s) 617
BclI TGATCA 1 cut(s) 433
BcoDI GTCTC 2 cut(s) 359, 512
BfmI CTRYAG 1 cut(s) 604
BglII AGATCT 1 cut(s) 270
BisI GCNGC 5 cut(s) 142, 293, 424, 445, 455
BlsI GCNGC 5 cut(s) 143, 294, 425, 446, 456
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 10, 467
BmrFI CCNGG 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 500
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 411, 507
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 293, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 425, 558
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 2 cut(s) 411, 507
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 2 cut(s) 425, 558
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 3 cut(s) 24, 301, 428
BseXI GCAGC 2 cut(s) 279, 466
BsgI GTGCAG 1 cut(s) 278
Bsh1236I CGCG 2 cut(s) 144, 342
BshFI GGCC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 311
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 359, 512
BsnI GGCC 1 cut(s) 548
Bso31I GGTCTC 1 cut(s) 359
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 1 cut(s) 311
Bsp143I GATC 2 cut(s) 270, 433
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 5 cut(s) 142, 340, 423, 426, 444
BspANI GGCC 1 cut(s) 548
BspFNI CGCG 2 cut(s) 144, 342
BspHI TCATGA 2 cut(s) 430, 571
BspLI GGNNCC 2 cut(s) 10, 467
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 465
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 425, 558
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 411, 507
BssMI GATC 2 cut(s) 270, 433
BssT1I CCWWGG 1 cut(s) 507
Bst2UI CCWGG 1 cut(s) 617
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 6 cut(s) 215, 336, 340, 546, 565, 627
BstDSI CCRYGG 1 cut(s) 507
BstFNI CGCG 2 cut(s) 144, 342
BstHHI GCGC 2 cut(s) 146, 638
BstKTI GATC 2 cut(s) 273, 436
BstMAI GTCTC 2 cut(s) 359, 512
BstMBI GATC 2 cut(s) 270, 433
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 615
BstSFI CTRYAG 1 cut(s) 604
BstUI CGCG 2 cut(s) 144, 342
BstV1I GCAGC 2 cut(s) 279, 466
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 270
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 1 cut(s) 548
BtgI CCRYGG 1 cut(s) 507
Cac8I GCNNGC 6 cut(s) 215, 336, 340, 546, 565, 627
CciI TCATGA 2 cut(s) 430, 571
CfoI GCGC 2 cut(s) 146, 638
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 331
Csp6I GTAC 2 cut(s) 376, 466
CviAII CATG 8 cut(s) 91, 220, 431, 497, 508, 572, 583, 639
CviQI GTAC 2 cut(s) 376, 466
DpnI GATC 2 cut(s) 272, 435
DpnII GATC 2 cut(s) 270, 433
EaeI YGGCCR 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 507
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 8
Eco72I CACGTG 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 615
EcoT14I CCWWGG 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 8 cut(s) 94, 223, 434, 500, 511, 575, 586, 642
FaiI YATR 9 cut(s) 92, 182, 221, 432, 498, 509, 573, 584, 640
FalI AAGNNNNNCTT 2 cut(s) 260, 292
FatI CATG 8 cut(s) 90, 219, 430, 496, 507, 571, 582, 638
FauI CCCGC 1 cut(s) 347
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 5 cut(s) 142, 293, 424, 445, 455
Fsp4HI GCNGC 5 cut(s) 142, 293, 424, 445, 455
GlaI GCGC 2 cut(s) 145, 637
GluI GCNGC 5 cut(s) 142, 293, 424, 445, 455
GsuI CTGGAG 1 cut(s) 500
HaeIII GGCC 1 cut(s) 548
HapII CCGG 1 cut(s) 289
HgaI GACGC 1 cut(s) 331
HhaI GCGC 2 cut(s) 146, 638
Hin1II CATG 8 cut(s) 94, 223, 434, 500, 511, 575, 586, 642
Hin6I GCGC 2 cut(s) 144, 636
HinP1I GCGC 2 cut(s) 144, 636
HinfI GANTC 4 cut(s) 383, 449, 599, 612
HpaII CCGG 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 346
Hpy188III TCNNGA 3 cut(s) 431, 437, 572
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 246
HpyCH4IV ACGT 2 cut(s) 135, 321
HpyCH4V TGCA 4 cut(s) 223, 295, 496, 563
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpySE526I ACGT 2 cut(s) 135, 321
Hsp92II CATG 8 cut(s) 94, 223, 434, 500, 511, 575, 586, 642
HspAI GCGC 2 cut(s) 144, 636
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 433
Kzo9I GATC 2 cut(s) 270, 433
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 4 cut(s) 92, 252, 314, 415
Lsp1109I GCAGC 2 cut(s) 279, 466
MaeII ACGT 2 cut(s) 135, 321
MalI GATC 2 cut(s) 272, 435
MboI GATC 2 cut(s) 270, 433
MboII GAAGA 7 cut(s) 66, 69, 118, 256, 265, 268, 317
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 311
MluCI AATT 4 cut(s) 147, 388, 394, 402
MlyI GAGTC 2 cut(s) 458, 608
MmeI TCCRAC 1 cut(s) 567
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 617
MvaI CCWGG 1 cut(s) 617
MvnI CGCG 2 cut(s) 144, 342
MwoI GCNNNNNNNGC 1 cut(s) 635
NcoI CCATGG 1 cut(s) 507
NdeII GATC 2 cut(s) 270, 433
NlaIII CATG 8 cut(s) 94, 223, 434, 500, 511, 575, 586, 642
NlaIV GGNNCC 2 cut(s) 10, 467
NspV TTCGAA 1 cut(s) 386
PagI TCATGA 2 cut(s) 430, 571
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 2 cut(s) 383, 612
PflMI CCANNNNNTGG 1 cut(s) 478
PfoI TCCNGGA 1 cut(s) 615
PkrI GCNGC 5 cut(s) 143, 294, 425, 446, 456
PleI GAGTC 2 cut(s) 457, 607
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 2 cut(s) 457, 607
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 615
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 615
PspN4I GGNNCC 2 cut(s) 10, 467
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 2 cut(s) 377, 467
RsaNI GTAC 2 cut(s) 376, 466
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 5 cut(s) 142, 293, 424, 445, 455
Sau3AI GATC 2 cut(s) 270, 433
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 458, 608
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 1 cut(s) 311
SfcI CTRYAG 1 cut(s) 604
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 4 cut(s) 147, 388, 394, 402
SsiI CCGC 5 cut(s) 142, 340, 423, 426, 444
StyD4I CCNGG 1 cut(s) 615
StyI CCWWGG 1 cut(s) 507
TaiI ACGT 2 cut(s) 138, 324
TaqI TCGA 1 cut(s) 386
TasI AATT 4 cut(s) 147, 388, 394, 402
TatI WGTACW 1 cut(s) 375
TauI GCSGC 3 cut(s) 144, 426, 447
TfiI GAWTC 2 cut(s) 383, 612
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 2 cut(s) 292, 454
TspDTI ATGAA 4 cut(s) 181, 513, 547, 571
TspGWI ACGGA 1 cut(s) 388
Van91I CCANNNNNTGG 1 cut(s) 478
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.