Rroxscaffold_6G00401830

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011942
Physical Location & Seq
Forward (+)
24215652 .. 24215948
297 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_6G00401830.1

Sequence Viewer

Length: 297 bp
ATGATCAGGACAGCGGCGAGTCGCAGCTTTCGGGGTACCTCCAATGGCTGGAGGGAAAACAAGGTGCATGAAAAATCCATGGCTGATGAGACAGATGAGAATGAGATTGATAAGCTGGCCGATTTGTTCATTGCGAGCTGTCATGAGAAGTTCATGTTGGAGAAGCAGGGAGTCCTACAGGAGATTCCAGGAAATGCTTGCCCAGAAGCGCATGAGATCGGTAGTTGTTTAGTGTCTGTGTGGGATCAAATTTCACTTTACCTTTCTCATTCTTCTATGAAAACATGTCGCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

98

Amino Acids

11.07

Weight (kDa)

5.33

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 33 - 57 1.7e-07 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 35
AccB7I CCANNNNNTGG 1 cut(s) 48
AccII CGCG 1 cut(s) 291
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 1 cut(s) 249
AfaI GTAC 1 cut(s) 37
AfiI CCNNNNNNNGG 1 cut(s) 48
AflIII ACRYGT 1 cut(s) 284
AjnI CCWGG 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 27, 115, 138
AluI AGCT 3 cut(s) 27, 115, 138
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 252
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 249
Asp718I GGTACC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 36
BciT130I CCWGG 1 cut(s) 189
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 83
BfmI CTRYAG 1 cut(s) 176
BisI GCNGC 2 cut(s) 15, 25
BlsI GCNGC 2 cut(s) 16, 26
Bme1390I CCNGG 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 1 cut(s) 189
BpmI CTGGAG 1 cut(s) 70
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 48
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 48
BseMI GCAATG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 1 cut(s) 119
BshNI GGYRCC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 48
BsmAI GTCTC 1 cut(s) 83
BsnI GGCC 1 cut(s) 119
Bsp143I GATC 3 cut(s) 3, 216, 244
Bsp19I CCATGG 1 cut(s) 78
Bsp68I TCGCGA 1 cut(s) 291
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 119
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 1 cut(s) 252
BspT107I GGYRCC 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 3 cut(s) 3, 216, 244
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 189
BstC8I GCNNGC 3 cut(s) 117, 136, 199
BstDSI CCRYGG 1 cut(s) 78
BstFNI CGCG 1 cut(s) 291
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 6, 219, 247
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 3 cut(s) 3, 216, 244
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 187
BstSFI CTRYAG 1 cut(s) 176
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 36
BsuRI GGCC 1 cut(s) 119
BtgI CCRYGG 1 cut(s) 78
BtuMI TCGCGA 1 cut(s) 291
Cac8I GCNNGC 3 cut(s) 117, 136, 199
CciI TCATGA 1 cut(s) 142
CfoI GCGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 36
CviAII CATG 6 cut(s) 68, 79, 143, 154, 212, 285
CviJI RGCY 6 cut(s) 27, 48, 83, 115, 119, 138
CviKI_1 RGCY 6 cut(s) 27, 48, 83, 115, 119, 138
CviQI GTAC 1 cut(s) 36
DpnI GATC 3 cut(s) 5, 218, 246
DpnII GATC 3 cut(s) 3, 216, 244
EaeI YGGCCR 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 6 cut(s) 71, 82, 146, 157, 215, 288
FaiI YATR 7 cut(s) 69, 80, 144, 155, 213, 278, 286
FatI CATG 6 cut(s) 67, 78, 142, 153, 211, 284
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 15, 25
Fsp4HI GCNGC 2 cut(s) 15, 25
GlaI GCGC 1 cut(s) 210
GluI GCNGC 2 cut(s) 15, 25
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 1 cut(s) 211
Hin1II CATG 6 cut(s) 71, 82, 146, 157, 215, 288
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HinfI GANTC 3 cut(s) 19, 171, 184
Hpy188III TCNNGA 3 cut(s) 7, 143, 290
HpyCH4V TGCA 1 cut(s) 67
Hsp92II CATG 6 cut(s) 71, 82, 146, 157, 215, 288
HspAI GCGC 1 cut(s) 209
KpnI GGTACC 1 cut(s) 39
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 216, 244
LpnPI CCDG 7 cut(s) 34, 101, 152, 164, 174, 201, 216
Lsp1109I GCAGC 1 cut(s) 36
MalI GATC 3 cut(s) 5, 218, 246
MboI GATC 3 cut(s) 3, 216, 244
MboII GAAGA 1 cut(s) 264
MluCI AATT 1 cut(s) 249
MlyI GAGTC 2 cut(s) 28, 180
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 2 cut(s) 45, 49
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MvnI CGCG 1 cut(s) 291
NcoI CCATGG 1 cut(s) 78
NdeII GATC 3 cut(s) 3, 216, 244
NlaIII CATG 6 cut(s) 71, 82, 146, 157, 215, 288
NlaIV GGNNCC 1 cut(s) 37
NruI TCGCGA 1 cut(s) 291
NspI RCATGY 1 cut(s) 288
PagI TCATGA 1 cut(s) 142
PciI ACATGT 1 cut(s) 284
PfeI GAWTC 1 cut(s) 184
PflMI CCANNNNNTGG 1 cut(s) 48
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 2 cut(s) 16, 26
PleI GAGTC 2 cut(s) 27, 179
PpsI GAGTC 2 cut(s) 27, 179
PscI ACATGT 1 cut(s) 284
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 37
RruI TCGCGA 1 cut(s) 291
RsaI GTAC 1 cut(s) 37
RsaNI GTAC 1 cut(s) 36
SatI GCNGC 2 cut(s) 15, 25
Sau3AI GATC 3 cut(s) 3, 216, 244
SchI GAGTC 2 cut(s) 28, 180
ScrFI CCNGG 1 cut(s) 189
SetI ASST 6 cut(s) 29, 41, 66, 117, 140, 264
SfcI CTRYAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 187
StyI CCWWGG 1 cut(s) 78
TasI AATT 1 cut(s) 249
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 184
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 4 cut(s) 84, 118, 142, 293
Van91I CCANNNNNTGG 1 cut(s) 48
XapI RAATTY 1 cut(s) 249
XceI RCATGY 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.