MD14G1059200.v1.1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0011942
Physical Location & Seq
Reverse (-)
6167265 .. 6167921
657 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1059200.v1.1.491

Sequence Viewer

Length: 657 bp
ATGGTTAGAGTTGGACCCTCCTCCAATCTAAAATCCCTCCACCCTCTTCAAGTTTTCTCCACCTTACCACCACCACCAGCTTCTACCTTGAGCTCCACCATGAGGATCAAAACCCTAATCCACACCCTCATTTTCTCACATGTGTGCCGCGTAATTCGGTGCCTTAACAAAGCCAGGTCCAAGGCCTTATCAATTCTCATCCAGGTTCTCAGAGATAGCCAACCCATGCAGCTCATCTACCCTACAAGAAAAACCAAGAACAAGAAAAAGACCAAGAAGATATTCTTCGGCTCGTTTAGACTGCACTACAACTGGTGCTCCTCTACGCATGTGTTGCCCGTGCCTGCGCATGTCTACGATGGATTAACAGCAACACATTTGTACTATGATTCCACATGGAATTCAGTAATTTCAACTGATGGTCAGCAATGTGAGGATAATCATGGTCCTGAGTCGCAGCTCACTGGGTACCTCCAATGGCTTGAGGAGAAGAAGGTCCATGATAATAATAATAATTCCATGGACAACGATCCGACCGATGCTAATGAGATCGATAAGCTAGCTGATTTGTTCATTGCTAGAAGCCATGAGAAGTTTATATTGGAGAAGCAGGAGTCCTACAGGAGATTCCAAGAAAGGCTTGCCAGAAGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

219

Amino Acids

25.11

Weight (kDa)

9.45

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 182 - 216 1.5e-12 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 468
AccB1I GGYRCC 2 cut(s) 159, 468
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 148
AclWI GGATC 2 cut(s) 113, 524
AcsI RAATTY 1 cut(s) 400
AfaI GTAC 2 cut(s) 383, 470
AfiI CCNNNNNNNGG 1 cut(s) 102
AflIII ACRYGT 1 cut(s) 139
AgsI TTSAA 2 cut(s) 50, 414
AjnI CCWGG 2 cut(s) 173, 201
AjuI GAANNNNNNNTTGG 4 cut(s) 266, 298, 584, 616
AleI CACNNNNGTG 1 cut(s) 142
AluBI AGCT 6 cut(s) 80, 93, 232, 460, 559, 563
AluI AGCT 6 cut(s) 80, 93, 232, 460, 559, 563
Alw21I GWGCWC 2 cut(s) 95, 320
AlwI GGATC 2 cut(s) 113, 524
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 229, 457
ApoI RAATTY 1 cut(s) 400
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 468
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 4 cut(s) 14, 177, 446, 496
AsuNHI GCTAGC 1 cut(s) 559
AvaII GGWCC 4 cut(s) 14, 177, 446, 496
BanI GGYRCC 2 cut(s) 159, 468
BanII GRGCYC 1 cut(s) 95
Bbv12I GWGCWC 2 cut(s) 95, 320
BbvI GCAGC 2 cut(s) 241, 469
BccI CCATC 2 cut(s) 353, 413
BciT130I CCWGG 2 cut(s) 175, 203
BfaI CTAG 2 cut(s) 560, 579
BfmI CTRYAG 1 cut(s) 619
BisI GCNGC 3 cut(s) 148, 230, 458
BlsI GCNGC 3 cut(s) 149, 231, 459
Bme1390I CCNGG 2 cut(s) 175, 203
Bme18I GGWCC 4 cut(s) 14, 177, 446, 496
BmgT120I GGNCC 4 cut(s) 14, 177, 446, 496
BmiI GGNNCC 3 cut(s) 16, 161, 470
BmrFI CCNGG 2 cut(s) 175, 203
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 529
BmtI GCTAGC 1 cut(s) 563
BmuI ACTGGG 1 cut(s) 474
BpuEI CTTGAG 2 cut(s) 109, 503
Bsa29I ATCGAT 1 cut(s) 552
BsaJI CCNNGG 2 cut(s) 180, 519
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 2 cut(s) 317, 469
Bse3DI GCAATG 2 cut(s) 434, 573
BseBI CCWGG 2 cut(s) 175, 203
BseCI ATCGAT 1 cut(s) 552
BseDI CCNNGG 2 cut(s) 180, 519
BseGI GGATG 1 cut(s) 198
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 2 cut(s) 434, 573
BseMII CTCAG 2 cut(s) 223, 441
BseNI ACTGG 2 cut(s) 317, 469
BseRI GAGGAG 3 cut(s) 10, 310, 500
BseXI GCAGC 2 cut(s) 241, 469
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 150
Bsh1285I CGRYCG 1 cut(s) 537
BshFI GGCC 1 cut(s) 185
BshNI GGYRCC 2 cut(s) 159, 468
BshVI ATCGAT 1 cut(s) 552
BsiEI CGRYCG 1 cut(s) 537
BsiHKAI GWGCWC 2 cut(s) 95, 320
BslI CCNNNNNNNGG 1 cut(s) 102
BsnI GGCC 1 cut(s) 185
Bsp1286I GDGCHC 2 cut(s) 95, 320
Bsp143I GATC 3 cut(s) 105, 529, 549
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 1 cut(s) 148
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 222, 442
BspDI ATCGAT 1 cut(s) 552
BspFNI CGCG 1 cut(s) 150
BspLI GGNNCC 3 cut(s) 16, 161, 470
BspOI GCTAGC 1 cut(s) 563
BspPI GGATC 2 cut(s) 113, 524
BspT107I GGYRCC 2 cut(s) 159, 468
BsrDI GCAATG 2 cut(s) 434, 573
BsrI ACTGG 2 cut(s) 317, 469
BssECI CCNNGG 2 cut(s) 180, 519
BssMI GATC 3 cut(s) 105, 529, 549
BssT1I CCWWGG 2 cut(s) 180, 519
Bst2UI CCWGG 2 cut(s) 175, 203
Bst6I CTCTTC 1 cut(s) 51
BstAPI GCANNNNNTGC 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 345, 561, 642
BstDEI CTNAG 2 cut(s) 209, 450
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 198
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 3 cut(s) 108, 532, 552
BstMBI GATC 3 cut(s) 105, 529, 549
BstMCI CGRYCG 1 cut(s) 537
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNI CCWGG 2 cut(s) 175, 203
BstNSI RCATGY 3 cut(s) 143, 332, 353
BstSCI CCNGG 2 cut(s) 173, 201
BstSFI CTRYAG 1 cut(s) 619
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 241, 469
Bsu15I ATCGAT 1 cut(s) 552
BsuRI GGCC 1 cut(s) 185
BsuTUI ATCGAT 1 cut(s) 552
BtgI CCRYGG 1 cut(s) 519
BtsCI GGATG 1 cut(s) 198
BtsIMutI CAGTG 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 345, 561, 642
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 4 cut(s) 14, 177, 446, 496
ClaI ATCGAT 1 cut(s) 552
Csp6I GTAC 2 cut(s) 382, 469
CviQI GTAC 2 cut(s) 382, 469
DdeI CTNAG 2 cut(s) 209, 450
DpnI GATC 3 cut(s) 107, 531, 551
DpnII GATC 3 cut(s) 105, 529, 549
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Ecl136II GAGCTC 1 cut(s) 93
Eco130I CCWWGG 2 cut(s) 180, 519
Eco147I AGGCCT 1 cut(s) 185
Eco24I GRGCYC 1 cut(s) 95
Eco47I GGWCC 4 cut(s) 14, 177, 446, 496
Eco53kI GAGCTC 1 cut(s) 93
EcoICRI GAGCTC 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 2 cut(s) 173, 201
EcoT14I CCWWGG 2 cut(s) 180, 519
EcoT38I GRGCYC 1 cut(s) 95
ErhI CCWWGG 2 cut(s) 180, 519
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 624, 656
FauNDI CATATG 1 cut(s) 653
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 3 cut(s) 148, 230, 458
FokI GGATG 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 3 cut(s) 148, 230, 458
FspBI CTAG 2 cut(s) 560, 579
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 1 cut(s) 348
GluI GCNGC 3 cut(s) 148, 230, 458
HaeIII GGCC 1 cut(s) 185
HhaI GCGC 1 cut(s) 349
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 4 cut(s) 389, 452, 614, 627
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 212, 534
Hpy188III TCNNGA 1 cut(s) 449
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 487
HpyCH4V TGCA 2 cut(s) 229, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 2 cut(s) 209, 450
HspAI GCGC 1 cut(s) 347
KpnI GGTACC 1 cut(s) 472
Kzo9I GATC 3 cut(s) 105, 529, 549
LmnI GCTCC 2 cut(s) 98, 323
Lsp1109I GCAGC 2 cut(s) 241, 469
LweI GCATC 1 cut(s) 529
MaeI CTAG 2 cut(s) 560, 579
MalI GATC 3 cut(s) 107, 531, 551
MboI GATC 3 cut(s) 105, 529, 549
MboII GAAGA 4 cut(s) 38, 277, 289, 502
MhlI GDGCHC 2 cut(s) 95, 320
MluCI AATT 5 cut(s) 153, 192, 400, 408, 514
MlyI GAGTC 2 cut(s) 461, 623
MmeI TCCRAC 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 2 cut(s) 165, 365
MslI CAYNNNNRTG 1 cut(s) 142
MspR9I CCNGG 2 cut(s) 175, 203
MvaI CCWGG 2 cut(s) 175, 203
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 334
NcoI CCATGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 653
NdeII GATC 3 cut(s) 105, 529, 549
NheI GCTAGC 1 cut(s) 559
NlaIV GGNNCC 3 cut(s) 16, 161, 470
NsbI TGCGCA 1 cut(s) 348
NspI RCATGY 3 cut(s) 143, 332, 353
OliI CACNNNNGTG 1 cut(s) 142
PceI AGGCCT 1 cut(s) 185
PciI ACATGT 1 cut(s) 139
PcsI WCGNNNNNNNCGW 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 389, 627
PkrI GCNGC 3 cut(s) 149, 231, 459
PleI GAGTC 2 cut(s) 460, 622
PpsI GAGTC 2 cut(s) 460, 622
PscI ACATGT 1 cut(s) 139
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 173, 201
PspGI CCWGG 2 cut(s) 173, 201
PspN4I GGNNCC 3 cut(s) 16, 161, 470
PspPI GGNCC 4 cut(s) 14, 177, 446, 496
RsaI GTAC 2 cut(s) 383, 470
RsaNI GTAC 2 cut(s) 382, 469
RseI CAYNNNNRTG 1 cut(s) 142
SacI GAGCTC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 165, 365
SatI GCNGC 3 cut(s) 148, 230, 458
Sau3AI GATC 3 cut(s) 105, 529, 549
Sau96I GGNCC 4 cut(s) 14, 177, 446, 496
SchI GAGTC 2 cut(s) 461, 623
ScrFI CCNGG 2 cut(s) 175, 203
SduI GDGCHC 2 cut(s) 95, 320
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 619
SinI GGWCC 4 cut(s) 14, 177, 446, 496
SmiMI CAYNNNNRTG 1 cut(s) 142
SmlI CTYRAG 2 cut(s) 88, 482
SmoI CTYRAG 2 cut(s) 88, 482
Sse9I AATT 5 cut(s) 153, 192, 400, 408, 514
SseBI AGGCCT 1 cut(s) 185
SsiI CCGC 1 cut(s) 148
SspMI CTAG 2 cut(s) 560, 579
SstI GAGCTC 1 cut(s) 95
StuI AGGCCT 1 cut(s) 185
StyD4I CCNGG 2 cut(s) 173, 201
StyI CCWWGG 2 cut(s) 180, 519
TaqI TCGA 1 cut(s) 552
TaqII GACCGA 1 cut(s) 551
TasI AATT 5 cut(s) 153, 192, 400, 408, 514
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 389, 627
Tru1I TTAA 2 cut(s) 165, 365
Tru9I TTAA 2 cut(s) 165, 365
TscAI CASTG 1 cut(s) 469
TseI GCWGC 2 cut(s) 229, 457
TspDTI ATGAA 1 cut(s) 562
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 4 cut(s) 14, 177, 446, 496
XapI RAATTY 1 cut(s) 400
XceI RCATGY 3 cut(s) 143, 332, 353
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 560, 579
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.