AT5G06790

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011942
Physical Location & Seq
Reverse (-)
2097669 .. 2099055
1387 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G06790.1

Sequence Viewer

Length: 630 bp
ATGGCAATGCCACTCAAATCAACATCTTCTTCTATGTCTTCTTCTCAATGTTCATCTTCTTCTTCACCAACCTCAAGCTCCATGAAACTCAAATCCCTAATACAAACTCTCATCATTTCTCAAGTTTGTCGGCTACTCCGAGAAATATCTAGAGTTTCATCCATTCTTGTTAGAGTCTTGAGAAAGAAGCAATACAATTTCTTGTCAGTGTCTTCTTTACTCTATCCAAAGAGAGTCTCAAAGAAACAAAAGAATAATATATTATTCGGCTCCTTCAGACTTCACTACAACTTTTGCTCCTCTCACGTAGTGCCTGTCTCTGCGCCAGTGCGTCTCCCGGAAGAGCTCTACTTAGCTCATCTCGTACACGAATCGACTTGGGAGTCAATGTACTCCACTGAATCCATGGATGGTCGCGATGATGATGATCAAGAACCATCTCAGCTCTCTAGCTATCTAAGACAGCTAGAGGATAAAGTTAAAGACGGCCAAGAAGAGGAGACAGAGACGATGATGAATGAGATTGATAAATTGGCTGATAGGTTTATAGCAAATTGCCATGAGAAGTTCATGTTGGAGAAAGTTGATTCATATAGGAGATCCCAAGGAACCCTGAATAGAAGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

209

Amino Acids

23.89

Weight (kDa)

8.62

Isoelectric Point (pI)

70.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 173 - 207 2.6e-13 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 382
AccII CGCG 1 cut(s) 417
AciI CCGC 1 cut(s) 624
AclWI GGATC 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 259
AdeI CACNNNGTG 1 cut(s) 310
AfaI GTAC 2 cut(s) 366, 392
AfiI CCNNNNNNNGG 1 cut(s) 496
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 6 cut(s) 78, 346, 356, 445, 453, 466
AluI AGCT 6 cut(s) 78, 346, 356, 445, 453, 466
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 5 cut(s) 241, 322, 338, 494, 500
AlwI GGATC 1 cut(s) 594
AoxI GGCC 1 cut(s) 487
AspLEI GCGC 1 cut(s) 325
AsuC2I CCSGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 57
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 30, 204
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 404, 445
BceAI ACGGC 1 cut(s) 502
BclI TGATCA 1 cut(s) 427
BcnI CCSGG 1 cut(s) 338
BcoDI GTCTC 5 cut(s) 241, 322, 338, 494, 500
BfaI CTAG 3 cut(s) 150, 450, 467
Bme1390I CCNGG 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 271, 610
BmrFI CCNGG 1 cut(s) 338
BpiI GAAGAC 2 cut(s) 30, 204
BpuEI CTTGAG 3 cut(s) 58, 105, 199
BpuMI CCSGG 1 cut(s) 338
BsaAI YACGTR 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 426
BsaJI CCNNGG 2 cut(s) 405, 604
BsaXI ACNNNNNCTCC 4 cut(s) 281, 311, 374, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 496
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 12
Bse8I GATNNNNATC 1 cut(s) 426
BseDI CCNNGG 2 cut(s) 405, 604
BseGI GGATG 2 cut(s) 158, 415
BseJI GATNNNNATC 1 cut(s) 426
BseLI CCNNNNNNNGG 1 cut(s) 496
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 455
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 289, 512
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 1 cut(s) 489
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 496
BsmAI GTCTC 5 cut(s) 241, 322, 338, 494, 500
BsmBI CGTCTC 2 cut(s) 338, 500
BsnI GGCC 1 cut(s) 489
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 427, 599
Bsp19I CCATGG 1 cut(s) 405
Bsp68I TCGCGA 1 cut(s) 417
BspACI CCGC 1 cut(s) 624
BspANI GGCC 1 cut(s) 489
BspCNI CTCAG 1 cut(s) 454
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 2 cut(s) 271, 610
BspPI GGATC 1 cut(s) 594
BspQI GCTCTTC 1 cut(s) 336
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 405, 604
BssMI GATC 2 cut(s) 427, 599
BssT1I CCWWGG 2 cut(s) 405, 604
Bst6I CTCTTC 2 cut(s) 336, 489
BstBAI YACGTR 1 cut(s) 307
BstDEI CTNAG 3 cut(s) 352, 441, 458
BstDSI CCRYGG 1 cut(s) 405
BstF5I GGATG 2 cut(s) 158, 415
BstFNI CGCG 1 cut(s) 417
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 2 cut(s) 430, 602
BstMAI GTCTC 5 cut(s) 241, 322, 338, 494, 500
BstMBI GATC 2 cut(s) 427, 599
BstSCI CCNGG 1 cut(s) 336
BstUI CGCG 1 cut(s) 417
BstV2I GAAGAC 2 cut(s) 30, 204
BstX2I RGATCY 1 cut(s) 599
BstYI RGATCY 1 cut(s) 599
BsuRI GGCC 1 cut(s) 489
BtgI CCRYGG 1 cut(s) 405
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 158, 415
BtsIMutI CAGTG 3 cut(s) 213, 333, 396
BtuMI TCGCGA 1 cut(s) 417
CfoI GCGC 1 cut(s) 325
CseI GACGC 1 cut(s) 320
Csp6I GTAC 2 cut(s) 365, 391
CviAII CATG 4 cut(s) 82, 406, 560, 571
CviQI GTAC 2 cut(s) 365, 391
DdeI CTNAG 3 cut(s) 352, 441, 458
DpnI GATC 2 cut(s) 429, 601
DpnII GATC 2 cut(s) 427, 599
DraIII CACNNNGTG 1 cut(s) 310
DrdI GACNNNNNNGTC 1 cut(s) 382
DseDI GACNNNNNNGTC 1 cut(s) 382
EaeI YGGCCR 1 cut(s) 487
Eam1104I CTCTTC 2 cut(s) 336, 489
EarI CTCTTC 2 cut(s) 336, 489
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 2 cut(s) 405, 604
Eco24I GRGCYC 1 cut(s) 348
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 405, 604
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 2 cut(s) 405, 604
Esp3I CGTCTC 2 cut(s) 338, 500
FaeI CATG 4 cut(s) 85, 409, 563, 574
FaiI YATR 9 cut(s) 35, 83, 260, 407, 548, 561, 572, 592, 594
FatI CATG 4 cut(s) 81, 405, 559, 570
FbaI TGATCA 1 cut(s) 427
FokI GGATG 2 cut(s) 145, 422
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 3 cut(s) 150, 450, 467
GlaI GCGC 1 cut(s) 324
HaeIII GGCC 1 cut(s) 489
HapII CCGG 1 cut(s) 338
HgaI GACGC 1 cut(s) 320
HhaI GCGC 1 cut(s) 325
Hin1II CATG 4 cut(s) 85, 409, 563, 574
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HinfI GANTC 6 cut(s) 174, 234, 371, 383, 401, 587
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 2 cut(s) 140, 278
Hpy188III TCNNGA 4 cut(s) 150, 178, 416, 431
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 306
HpyF3I CTNAG 3 cut(s) 352, 441, 458
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 4 cut(s) 85, 409, 563, 574
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 427, 599
LguI GCTCTTC 1 cut(s) 336
LmnI GCTCC 3 cut(s) 83, 275, 302
LpnPI CCDG 4 cut(s) 327, 339, 351, 626
MaeI CTAG 3 cut(s) 150, 450, 467
MaeII ACGT 1 cut(s) 306
MalI GATC 2 cut(s) 429, 601
MboI GATC 2 cut(s) 427, 599
MflI RGATCY 1 cut(s) 599
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 196, 530, 553
MlyI GAGTC 3 cut(s) 183, 243, 392
MmeI TCCRAC 1 cut(s) 555
MnlI CCTC 4 cut(s) 82, 310, 463, 490
MseI TTAA 1 cut(s) 480
MspI CCGG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 338
MvnI CGCG 1 cut(s) 417
NciI CCSGG 1 cut(s) 338
NcoI CCATGG 1 cut(s) 405
NdeII GATC 2 cut(s) 427, 599
NlaIII CATG 4 cut(s) 85, 409, 563, 574
NlaIV GGNNCC 2 cut(s) 271, 610
NruI TCGCGA 1 cut(s) 417
PciSI GCTCTTC 1 cut(s) 336
PcsI WCGNNNNNNNCGW 1 cut(s) 136
PfeI GAWTC 3 cut(s) 371, 401, 587
PfoI TCCNGGA 1 cut(s) 336
PleI GAGTC 3 cut(s) 182, 242, 391
PpsI GAGTC 3 cut(s) 182, 242, 391
Ppu21I YACGTR 1 cut(s) 307
Psp124BI GAGCTC 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 271, 610
PsuI RGATCY 1 cut(s) 599
RruI TCGCGA 1 cut(s) 417
RsaI GTAC 2 cut(s) 366, 392
RsaNI GTAC 2 cut(s) 365, 391
SacI GAGCTC 1 cut(s) 348
SapI GCTCTTC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 480
Sau3AI GATC 2 cut(s) 427, 599
SchI GAGTC 3 cut(s) 183, 243, 392
ScrFI CCNGG 1 cut(s) 338
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 74, 80, 309, 348, 358, 447, 455, 468, 545
SmlI CTYRAG 3 cut(s) 73, 120, 178
SmoI CTYRAG 3 cut(s) 73, 120, 178
Sse9I AATT 3 cut(s) 196, 530, 553
SsiI CCGC 1 cut(s) 624
SspMI CTAG 3 cut(s) 150, 450, 467
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 336
StyI CCWWGG 2 cut(s) 405, 604
TaiI ACGT 1 cut(s) 309
TaqI TCGA 1 cut(s) 374
TasI AATT 3 cut(s) 196, 530, 553
TatI WGTACW 1 cut(s) 390
TfiI GAWTC 3 cut(s) 371, 401, 587
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 3 cut(s) 213, 333, 403
TspDTI ATGAA 6 cut(s) 42, 98, 147, 530, 559, 579
TspRI CASTG 3 cut(s) 213, 333, 403
XbaI TCTAGA 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 3 cut(s) 150, 450, 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.