Rh3DG256800

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011942
Physical Location & Seq
Reverse (-)
25421517 .. 25422731
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG256800.1

Sequence Viewer

Length: 654 bp
ATGGTTGGACCCTCCAATCTAAAAACCCTCCCTCCCATCCAAGTTTTCTCCACCTTATCACCACCACCATCGTCTTCTTCCTCAAGCTCCATGACAAAGCTCAAAACCCTTATCCGCACCCTCATCTTCTCCCACGTGTGCCGCGCAATTCGGTATCTCAACAAAGCCAAATCCAAAACCATATCCTTTTTCATTCAAATCATTAAGGAGAGCCAGCCCATGCAACTGATTTACCCCACAAAGAAGAGCAAGAGCAAGAACAAGAACAAGAACAAGATCTTCTTCGGCTCGTTCCGGCTGCACTACAACTGGTGCTCCTCCACGCACGTTCTTCCCGTGCCAGCCCGCGTCTACGAGGGTCTCACATCAACAAGCCATTTGTACTACGATTCGAATTGGAATTCCGTAATTTCAACCGAGGAGCAATGCGGCGGTCATGATCAGGACAGCGGCGAGTCGCAGCTTTCGGGGTACCTCCAATGGCTGGAGGAAAACAAGGTGCATGAAAAATCCATGGCTCAGGCTGATGAGACAGATGAGAATGAGATTGATAAGCTGGCCGATTTGTTCATTGCGAGCTGTCATGAGAAGTTCATGTTGGAGAAGCAGGAGTCCTACAGGAGATTCCAGGAAATGCTTGCCAGAAGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

217

Amino Acids

24.83

Weight (kDa)

8.94

Isoelectric Point (pI)

55.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 180 - 215 6.7e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 471
AccB1I GGYRCC 1 cut(s) 471
AccB7I CCANNNNNTGG 1 cut(s) 484
AccI GTMKAC 1 cut(s) 351
AccII CGCG 2 cut(s) 144, 348
AciI CCGC 6 cut(s) 115, 142, 346, 429, 432, 450
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 1 cut(s) 400
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 383, 473
AfiI CCNNNNNNNGG 1 cut(s) 484
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 2 cut(s) 197, 414
AjnI CCWGG 1 cut(s) 627
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 5 cut(s) 87, 100, 463, 556, 579
AluI AGCT 5 cut(s) 87, 100, 463, 556, 579
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 365, 524
AoxI GGCC 1 cut(s) 558
ApeKI GCWGC 2 cut(s) 298, 460
ApoI RAATTY 1 cut(s) 400
Asp718I GGTACC 1 cut(s) 471
AspLEI GCGC 2 cut(s) 146, 650
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 392
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 471
BbrPI CACGTG 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 2 cut(s) 285, 472
BccI CCATC 2 cut(s) 44, 76
BciT130I CCWGG 1 cut(s) 629
BclI TGATCA 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 365, 524
BfmI CTRYAG 1 cut(s) 616
BglII AGATCT 1 cut(s) 276
BisI GCNGC 5 cut(s) 142, 299, 430, 451, 461
BlsI GCNGC 5 cut(s) 143, 300, 431, 452, 462
Bme1390I CCNGG 1 cut(s) 629
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 10, 473
BmrFI CCNGG 1 cut(s) 629
BpiI GAAGAC 1 cut(s) 66
BpmI CTGGAG 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 519
Bpu14I TTCGAA 1 cut(s) 392
BpuEI CTTGAG 1 cut(s) 67
BsaAI YACGTR 1 cut(s) 136
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 417, 513
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 2 cut(s) 431, 570
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 417, 513
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 431, 570
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 1 cut(s) 314
BseRI GAGGAG 2 cut(s) 307, 434
BseXI GCAGC 2 cut(s) 285, 472
BsgI GTGCAG 1 cut(s) 284
Bsh1236I CGCG 2 cut(s) 144, 348
BshFI GGCC 1 cut(s) 560
BshNI GGYRCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 365, 524
BsnI GGCC 1 cut(s) 560
Bso31I GGTCTC 1 cut(s) 365
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 276, 439
Bsp19I CCATGG 1 cut(s) 513
BspACI CCGC 6 cut(s) 115, 142, 346, 429, 432, 450
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 1 cut(s) 532
BspFNI CGCG 2 cut(s) 144, 348
BspHI TCATGA 2 cut(s) 436, 583
BspLI GGNNCC 2 cut(s) 10, 473
BspQI GCTCTTC 1 cut(s) 239
BspT104I TTCGAA 1 cut(s) 392
BspT107I GGYRCC 1 cut(s) 471
BspTNI GGTCTC 1 cut(s) 365
BsrDI GCAATG 2 cut(s) 431, 570
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 417, 513
BssMI GATC 2 cut(s) 276, 439
BssT1I CCWWGG 1 cut(s) 513
Bst2UI CCWGG 1 cut(s) 629
Bst6I CTCTTC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 392
BstC8I GCNNGC 6 cut(s) 215, 342, 346, 558, 577, 639
BstDEI CTNAG 1 cut(s) 519
BstDSI CCRYGG 1 cut(s) 513
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 2 cut(s) 144, 348
BstHHI GCGC 2 cut(s) 146, 650
BstKTI GATC 2 cut(s) 279, 442
BstMAI GTCTC 2 cut(s) 365, 524
BstMBI GATC 2 cut(s) 276, 439
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 627
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 2 cut(s) 144, 348
BstV1I GCAGC 2 cut(s) 285, 472
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 276
BstYI RGATCY 1 cut(s) 276
BsuRI GGCC 1 cut(s) 560
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 1 cut(s) 36
Cac8I GCNNGC 6 cut(s) 215, 342, 346, 558, 577, 639
CciI TCATGA 2 cut(s) 436, 583
CfoI GCGC 2 cut(s) 146, 650
Cfr13I GGNCC 1 cut(s) 8
CseI GACGC 1 cut(s) 337
Csp6I GTAC 2 cut(s) 382, 472
CviAII CATG 8 cut(s) 91, 220, 437, 503, 514, 584, 595, 651
CviQI GTAC 2 cut(s) 382, 472
DdeI CTNAG 1 cut(s) 519
DpnI GATC 2 cut(s) 278, 441
DpnII GATC 2 cut(s) 276, 439
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 513
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 8
Eco72I CACGTG 1 cut(s) 136
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 513
ErhI CCWWGG 1 cut(s) 513
FaeI CATG 8 cut(s) 94, 223, 440, 506, 517, 587, 598, 654
FaiI YATR 9 cut(s) 92, 182, 221, 438, 504, 515, 585, 596, 652
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 8 cut(s) 90, 219, 436, 502, 513, 583, 594, 650
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 439
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 142, 299, 430, 451, 461
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 5 cut(s) 142, 299, 430, 451, 461
GlaI GCGC 2 cut(s) 145, 649
GluI GCNGC 5 cut(s) 142, 299, 430, 451, 461
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 560
HapII CCGG 1 cut(s) 295
HgaI GACGC 1 cut(s) 337
HhaI GCGC 2 cut(s) 146, 650
Hin1II CATG 8 cut(s) 94, 223, 440, 506, 517, 587, 598, 654
Hin6I GCGC 2 cut(s) 144, 648
HinP1I GCGC 2 cut(s) 144, 648
HinfI GANTC 4 cut(s) 389, 455, 611, 624
HpaII CCGG 1 cut(s) 295
HphI GGTGA 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 352
Hpy188III TCNNGA 3 cut(s) 437, 443, 584
Hpy8I GTNNAC 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 135, 327
HpyCH4V TGCA 3 cut(s) 223, 301, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 1 cut(s) 519
HpySE526I ACGT 2 cut(s) 135, 327
Hsp92II CATG 8 cut(s) 94, 223, 440, 506, 517, 587, 598, 654
HspAI GCGC 2 cut(s) 144, 648
KpnI GGTACC 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 439
Kzo9I GATC 2 cut(s) 276, 439
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 3 cut(s) 92, 320, 421
Lsp1109I GCAGC 2 cut(s) 285, 472
MaeII ACGT 2 cut(s) 135, 327
MalI GATC 2 cut(s) 278, 441
MboI GATC 2 cut(s) 276, 439
MboII GAAGA 7 cut(s) 66, 69, 118, 256, 271, 274, 323
MflI RGATCY 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 4 cut(s) 147, 394, 400, 408
MlyI GAGTC 2 cut(s) 464, 620
MmeI TCCRAC 1 cut(s) 579
MseI TTAA 1 cut(s) 204
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 629
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 2 cut(s) 144, 348
MwoI GCNNNNNNNGC 1 cut(s) 647
NcoI CCATGG 1 cut(s) 513
NdeII GATC 2 cut(s) 276, 439
NlaIII CATG 8 cut(s) 94, 223, 440, 506, 517, 587, 598, 654
NlaIV GGNNCC 2 cut(s) 10, 473
NspV TTCGAA 1 cut(s) 392
PagI TCATGA 2 cut(s) 436, 583
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 2 cut(s) 389, 624
PflMI CCANNNNNTGG 1 cut(s) 484
PfoI TCCNGGA 1 cut(s) 627
PkrI GCNGC 5 cut(s) 143, 300, 431, 452, 462
PleI GAGTC 2 cut(s) 463, 619
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
PpsI GAGTC 2 cut(s) 463, 619
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 627
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 2 cut(s) 10, 473
PspPI GGNCC 1 cut(s) 8
PsuI RGATCY 1 cut(s) 276
RsaI GTAC 2 cut(s) 383, 473
RsaNI GTAC 2 cut(s) 382, 472
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 5 cut(s) 142, 299, 430, 451, 461
Sau3AI GATC 2 cut(s) 276, 439
Sau96I GGNCC 1 cut(s) 8
SchI GAGTC 2 cut(s) 464, 620
ScrFI CCNGG 1 cut(s) 629
SduI GDGCHC 1 cut(s) 317
SfcI CTRYAG 1 cut(s) 616
SfuI TTCGAA 1 cut(s) 392
SinI GGWCC 1 cut(s) 8
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
Sse9I AATT 4 cut(s) 147, 394, 400, 408
SsiI CCGC 6 cut(s) 115, 142, 346, 429, 432, 450
StyD4I CCNGG 1 cut(s) 627
StyI CCWWGG 1 cut(s) 513
TaiI ACGT 2 cut(s) 138, 330
TaqI TCGA 1 cut(s) 392
TasI AATT 4 cut(s) 147, 394, 400, 408
TatI WGTACW 1 cut(s) 381
TauI GCSGC 3 cut(s) 144, 432, 453
TfiI GAWTC 2 cut(s) 389, 624
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseI GCWGC 2 cut(s) 298, 460
TspDTI ATGAA 4 cut(s) 181, 519, 559, 583
TspGWI ACGGA 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 484
VpaK11BI GGWCC 1 cut(s) 8
XapI RAATTY 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.