FvH4_6g22530

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011942
Physical Location & Seq
Reverse (-)
16202547 .. 16203194
648 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22530.t1

Sequence Viewer

Length: 648 bp
ATGGTTGGATCCTCCGGTCTAAAAACTCTTCCTCCTCTCCAAGTTTTCTCCACCTTACCACCACCGCCGCCGTCTTCTTCCTTAAGCTCCATGACCAAGCTCAAAACCCTAATCCACACCCTCATCTTCTCCCACATCTGCCGCGCAATTCGGTACCTAAACAAAGCCAAATCCAAAACCATATCCTTTTTCATTCAAGTCATCAAGGACAGCCAGCCAATGCAACTTATTTATCCTACAAAGAAGAGCAGGAGGAGCAAAAACAAGAACAAGATCTTCTTCGGCTCATTCCGGTTGCACTACAACTGGTGCTCCTCCACGCACGTTCTGCCCGTGCCGGCCCGCGTCTACGAGGGTCTGAGCTCGACAAGCCATTTGTACTACGACTCGAATTGGAATTCCGTGATTTCAACCGAGGAGAAATGCGGTAGTCATGACCAGAACAGCGGCGAGGCGCAGCTTTCCGGGTACCTACAATGGCTCGAGGAAAACAAGGTGCATGAGAAATCCATGGATACTACTGAGGCAGATGCAAATGAGATCGATAAGCTGGCGGATTTGTTCATTGCGAGCTGCCATGAGAAGTTCATGTTGGAGAAGCAGGAGTCGTACAGGAGATTCCAGGAAATGCTTGCCAGAAGCGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

216

Amino Acids

24.56

Weight (kDa)

9.2

Isoelectric Point (pI)

57.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 179 - 213 6.7e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 153, 468
AccB1I GGYRCC 2 cut(s) 153, 468
AccI GTMKAC 1 cut(s) 348
AccII CGCG 2 cut(s) 144, 345
AciI CCGC 7 cut(s) 65, 68, 142, 343, 426, 447, 554
AclWI GGATC 2 cut(s) 3, 16
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 4 cut(s) 155, 380, 470, 611
AfeI AGCGCT 1 cut(s) 643
AflII CTTAAG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 197, 411
AjnI CCWGG 1 cut(s) 621
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 6 cut(s) 87, 100, 363, 460, 550, 573
AluI AGCT 6 cut(s) 87, 100, 363, 460, 550, 573
Alw21I GWGCWC 2 cut(s) 314, 365
AlwI GGATC 2 cut(s) 3, 16
Ama87I CYCGRG 1 cut(s) 482
Aor51HI AGCGCT 1 cut(s) 643
AoxI GGCC 1 cut(s) 339
ApeKI GCWGC 2 cut(s) 457, 573
ApoI RAATTY 1 cut(s) 397
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
Asp718I GGTACC 2 cut(s) 153, 468
AspLEI GCGC 3 cut(s) 146, 457, 644
AspS9I GGNCC 1 cut(s) 340
AsuC2I CCSGG 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 482
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 2 cut(s) 153, 468
BanII GRGCYC 1 cut(s) 365
BbsI GAAGAC 1 cut(s) 66
Bbv12I GWGCWC 2 cut(s) 314, 365
BbvI GCAGC 2 cut(s) 469, 560
BceAI ACGGC 1 cut(s) 55
BciT130I CCWGG 1 cut(s) 623
BciVI GTATCC 1 cut(s) 508
BcnI CCSGG 1 cut(s) 466
BfoI RGCGCY 1 cut(s) 645
BfrI CTTAAG 1 cut(s) 82
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 1 cut(s) 273
BisI GCNGC 5 cut(s) 68, 142, 448, 458, 574
BlsI GCNGC 5 cut(s) 69, 143, 449, 459, 575
Bme1390I CCNGG 2 cut(s) 466, 623
BmeT110I CYCGRG 1 cut(s) 482
BmgT120I GGNCC 1 cut(s) 340
BmiI GGNNCC 3 cut(s) 10, 155, 470
BmrFI CCNGG 2 cut(s) 466, 623
BmsI GCATC 1 cut(s) 520
BpiI GAAGAC 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 466
Bsa29I ATCGAT 1 cut(s) 543
BsaJI CCNNGG 2 cut(s) 414, 510
BsaWI WCCGGW 2 cut(s) 14, 291
BsaXI ACNNNNNCTCC 4 cut(s) 16, 46, 296, 326
Bse118I RCCGGY 1 cut(s) 337
Bse1I ACTGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 623
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 414, 510
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 2 cut(s) 350, 513
BseNI ACTGG 1 cut(s) 311
BseRI GAGGAG 4 cut(s) 24, 268, 304, 431
BseXI GCAGC 2 cut(s) 469, 560
Bsh1236I CGCG 2 cut(s) 144, 345
BshFI GGCC 1 cut(s) 341
BshNI GGYRCC 2 cut(s) 153, 468
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 2 cut(s) 314, 365
BsiHKCI CYCGRG 1 cut(s) 482
BsiSI CCGG 4 cut(s) 15, 292, 338, 465
BsnI GGCC 1 cut(s) 341
BsoBI CYCGRG 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 314, 365
Bsp143I GATC 3 cut(s) 8, 273, 540
Bsp19I CCATGG 1 cut(s) 510
BspACI CCGC 7 cut(s) 65, 68, 142, 343, 426, 447, 554
BspANI GGCC 1 cut(s) 341
BspCNI CTCAG 2 cut(s) 351, 514
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 2 cut(s) 144, 345
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 3 cut(s) 10, 155, 470
BspPI GGATC 2 cut(s) 3, 16
BspQI GCTCTTC 1 cut(s) 239
BspT107I GGYRCC 2 cut(s) 153, 468
BspTI CTTAAG 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 1 cut(s) 337
BsrI ACTGG 1 cut(s) 311
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 414, 510
BssMI GATC 3 cut(s) 8, 273, 540
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 1 cut(s) 623
Bst6I CTCTTC 2 cut(s) 33, 239
BstAFI CTTAAG 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 328
BstC8I GCNNGC 6 cut(s) 215, 339, 343, 552, 571, 633
BstDEI CTNAG 2 cut(s) 359, 522
BstDSI CCRYGG 1 cut(s) 510
BstFNI CGCG 2 cut(s) 144, 345
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 3 cut(s) 146, 457, 644
BstKTI GATC 3 cut(s) 11, 276, 543
BstMBI GATC 3 cut(s) 8, 273, 540
BstMWI GCNNNNNNNGC 4 cut(s) 255, 328, 369, 641
BstNI CCWGG 1 cut(s) 623
BstSCI CCNGG 2 cut(s) 464, 621
BstUI CGCG 2 cut(s) 144, 345
BstV1I GCAGC 2 cut(s) 469, 560
BstV2I GAAGAC 1 cut(s) 66
BstX2I RGATCY 2 cut(s) 8, 273
BstYI RGATCY 2 cut(s) 8, 273
Bsu15I ATCGAT 1 cut(s) 543
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 1 cut(s) 341
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 1 cut(s) 510
Cac8I GCNNGC 6 cut(s) 215, 339, 343, 552, 571, 633
CciI TCATGA 1 cut(s) 433
CfoI GCGC 3 cut(s) 146, 457, 644
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 1 cut(s) 340
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 334
Csp6I GTAC 4 cut(s) 154, 379, 469, 610
CviAII CATG 6 cut(s) 91, 434, 500, 511, 578, 589
CviQI GTAC 4 cut(s) 154, 379, 469, 610
DdeI CTNAG 2 cut(s) 359, 522
DpnI GATC 3 cut(s) 10, 275, 542
DpnII GATC 3 cut(s) 8, 273, 540
Eam1104I CTCTTC 2 cut(s) 33, 239
EarI CTCTTC 2 cut(s) 33, 239
EciI GGCGGA 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 363
Eco130I CCWWGG 1 cut(s) 510
Eco24I GRGCYC 1 cut(s) 365
Eco47III AGCGCT 1 cut(s) 643
Eco53kI GAGCTC 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 482
EcoICRI GAGCTC 1 cut(s) 363
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 1 cut(s) 510
EcoT38I GRGCYC 1 cut(s) 365
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 6 cut(s) 94, 437, 503, 514, 581, 592
FaiI YATR 7 cut(s) 92, 182, 435, 501, 512, 579, 590
FalI AAGNNNNNCTT 2 cut(s) 263, 295
FatI CATG 6 cut(s) 90, 433, 499, 510, 577, 588
FauI CCCGC 1 cut(s) 350
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 5 cut(s) 68, 142, 448, 458, 574
FriOI GRGCYC 1 cut(s) 365
Fsp4HI GCNGC 5 cut(s) 68, 142, 448, 458, 574
GlaI GCGC 3 cut(s) 145, 456, 643
GluI GCNGC 5 cut(s) 68, 142, 448, 458, 574
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 1 cut(s) 341
HapII CCGG 4 cut(s) 15, 292, 338, 465
HgaI GACGC 1 cut(s) 334
HhaI GCGC 3 cut(s) 146, 457, 644
Hin1II CATG 6 cut(s) 94, 437, 503, 514, 581, 592
Hin6I GCGC 3 cut(s) 144, 455, 642
HinP1I GCGC 3 cut(s) 144, 455, 642
HinfI GANTC 3 cut(s) 386, 605, 618
HpaII CCGG 4 cut(s) 15, 292, 338, 465
Hpy166II GTNNAC 1 cut(s) 349
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 1 cut(s) 434
Hpy8I GTNNAC 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 324
HpyCH4V TGCA 4 cut(s) 223, 298, 499, 533
HpyF10VI GCNNNNNNNGC 4 cut(s) 255, 328, 369, 641
HpyF3I CTNAG 2 cut(s) 359, 522
HpySE526I ACGT 1 cut(s) 324
Hsp92II CATG 6 cut(s) 94, 437, 503, 514, 581, 592
HspAI GCGC 3 cut(s) 144, 455, 642
KpnI GGTACC 2 cut(s) 157, 472
KroI GCCGGC 1 cut(s) 337
KroNI GCCGGC 1 cut(s) 339
Kzo9I GATC 3 cut(s) 8, 273, 540
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 3 cut(s) 92, 255, 317
Lsp1109I GCAGC 2 cut(s) 469, 560
LweI GCATC 1 cut(s) 520
MaeII ACGT 1 cut(s) 324
MalI GATC 3 cut(s) 10, 275, 542
MboI GATC 3 cut(s) 8, 273, 540
MboII GAAGA 7 cut(s) 20, 66, 69, 118, 256, 268, 271
MflI RGATCY 2 cut(s) 8, 273
MhlI GDGCHC 2 cut(s) 314, 365
MluCI AATT 3 cut(s) 147, 391, 397
MlyI GAGTC 2 cut(s) 380, 614
MmeI TCCRAC 1 cut(s) 573
MroNI GCCGGC 1 cut(s) 337
MseI TTAA 1 cut(s) 83
MspA1I CMGCKG 1 cut(s) 447
MspCI CTTAAG 1 cut(s) 82
MspI CCGG 4 cut(s) 15, 292, 338, 465
MspR9I CCNGG 2 cut(s) 466, 623
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 2 cut(s) 144, 345
MwoI GCNNNNNNNGC 4 cut(s) 255, 328, 369, 641
NaeI GCCGGC 1 cut(s) 339
NciI CCSGG 1 cut(s) 466
NcoI CCATGG 1 cut(s) 510
NdeII GATC 3 cut(s) 8, 273, 540
NgoMIV GCCGGC 1 cut(s) 337
NlaIII CATG 6 cut(s) 94, 437, 503, 514, 581, 592
NlaIV GGNNCC 3 cut(s) 10, 155, 470
PaeR7I CTCGAG 1 cut(s) 482
PagI TCATGA 1 cut(s) 433
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdiI GCCGGC 1 cut(s) 339
PfeI GAWTC 1 cut(s) 618
PfoI TCCNGGA 1 cut(s) 621
PkrI GCNGC 5 cut(s) 69, 143, 449, 459, 575
PleI GAGTC 2 cut(s) 380, 613
PpsI GAGTC 2 cut(s) 380, 613
Psp124BI GAGCTC 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 621
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 3 cut(s) 10, 155, 470
PspPI GGNCC 1 cut(s) 340
PspXI VCTCGAGB 1 cut(s) 482
PsuI RGATCY 2 cut(s) 8, 273
RsaI GTAC 4 cut(s) 155, 380, 470, 611
RsaNI GTAC 4 cut(s) 154, 379, 469, 610
SacI GAGCTC 1 cut(s) 365
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 5 cut(s) 68, 142, 448, 458, 574
Sau3AI GATC 3 cut(s) 8, 273, 540
Sau96I GGNCC 1 cut(s) 340
SchI GAGTC 2 cut(s) 380, 614
ScrFI CCNGG 2 cut(s) 466, 623
SduI GDGCHC 2 cut(s) 314, 365
SfaNI GCATC 1 cut(s) 520
Sfr274I CTCGAG 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 482
SmlI CTYRAG 2 cut(s) 82, 482
SmoI CTYRAG 2 cut(s) 82, 482
Sse9I AATT 3 cut(s) 147, 391, 397
SsiI CCGC 7 cut(s) 65, 68, 142, 343, 426, 447, 554
SstI GAGCTC 1 cut(s) 365
StyD4I CCNGG 2 cut(s) 464, 621
StyI CCWWGG 1 cut(s) 510
TaiI ACGT 1 cut(s) 327
TaqI TCGA 4 cut(s) 365, 389, 483, 543
TasI AATT 3 cut(s) 147, 391, 397
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 70, 144, 450
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TseI GCWGC 2 cut(s) 457, 573
TspDTI ATGAA 3 cut(s) 181, 553, 577
TspGWI ACGGA 1 cut(s) 391
Vha464I CTTAAG 1 cut(s) 82
XapI RAATTY 1 cut(s) 397
XhoI CTCGAG 1 cut(s) 482
XmiI GTMKAC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.