pycom12g05220

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011942
Physical Location & Seq
Reverse (-)
5088178 .. 5088741
564 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g05220.1

Sequence Viewer

Length: 564 bp
ATGAAGATCAAAACCCTGGTCCACACCCTCGTTTTCTCACGCATGTGCCGCGTAATTCGGTGCCTCAACAAAGCCAGGTCCAAAGCCTTATCAATTCTCATTCAGGTTCTCAGAAATAGCCAACCCATGCAGCTCATCTACCCTACCAAAAAAACCAAGAACAAGAACAAGACCAAGAAGATATTCTTCGGCTCGTTTAGACTGCACTACAACTGGTCTACGCATGTGTTGCCCGTGCCTGCGCATGTCTACGATGGATTAACGGCAACACATTTGTACTATGATTCTACATGGAATTCAGTACTTTCAACTGATGGTCAGCAATGTGAGGATAATCATGGTGCTGAATCACAGCTCTCTGGGTACCTCCAATGGCTTGAGGAGAAGAAGGTCCGTGATAATAATAATAATAATAATAATAATTCCATGTCCGATGATCAGACTGATGCTAATGAGATCGATAAGCTAGCTGATTTGTTCATTGCTAAAAGCCATGAGCAGTTCATATTGGAGAAGCAGGAGTCCTACAGGAGATTTCAAGAAATGCTTGCCAGAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

188

Amino Acids

21.85

Weight (kDa)

9.32

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 151 - 185 8.8e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 243
Acc65I GGTACC 1 cut(s) 363
AccB1I GGYRCC 2 cut(s) 60, 363
AccI GTMKAC 2 cut(s) 218, 249
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 49
AcsI RAATTY 1 cut(s) 295
AfaI GTAC 3 cut(s) 278, 303, 365
AgsI TTSAA 2 cut(s) 309, 539
AjnI CCWGG 2 cut(s) 15, 74
AjuI GAANNNNNNNTTGG 2 cut(s) 167, 199
AleI CACNNNNGTG 1 cut(s) 43
AluBI AGCT 4 cut(s) 133, 355, 466, 470
AluI AGCT 4 cut(s) 133, 355, 466, 470
ApeKI GCWGC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 295
ArsI GACNNNNNNTTYG 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 182
Asp718I GGTACC 1 cut(s) 363
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 3 cut(s) 19, 78, 391
AsuNHI GCTAGC 1 cut(s) 466
AvaII GGWCC 3 cut(s) 19, 78, 391
BanI GGYRCC 2 cut(s) 60, 363
BbvI GCAGC 1 cut(s) 142
BccI CCATC 2 cut(s) 248, 308
BceAI ACGGC 1 cut(s) 279
BciT130I CCWGG 2 cut(s) 17, 76
BclI TGATCA 1 cut(s) 436
BfaI CTAG 1 cut(s) 467
BfmI CTRYAG 1 cut(s) 526
BisI GCNGC 2 cut(s) 49, 131
BlsI GCNGC 2 cut(s) 50, 132
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 17, 76
Bme18I GGWCC 3 cut(s) 19, 78, 391
BmgT120I GGNCC 3 cut(s) 19, 78, 391
BmiI GGNNCC 2 cut(s) 62, 365
BmrFI CCNGG 2 cut(s) 17, 76
BmsI GCATC 1 cut(s) 436
BmtI GCTAGC 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 398
Bsa29I ATCGAT 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 2 cut(s) 329, 480
BseBI CCWGG 2 cut(s) 17, 76
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 15
BseMI GCAATG 2 cut(s) 329, 480
BseMII CTCAG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 142
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 51
BshNI GGYRCC 2 cut(s) 60, 363
BshVI ATCGAT 1 cut(s) 459
Bsp143I GATC 3 cut(s) 6, 436, 456
BspACI CCGC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 459
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 2 cut(s) 62, 365
BspOI GCTAGC 1 cut(s) 470
BspT107I GGYRCC 2 cut(s) 60, 363
BsrDI GCAATG 2 cut(s) 329, 480
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 3 cut(s) 6, 436, 456
Bst2UI CCWGG 2 cut(s) 17, 76
BstAPI GCANNNNNTGC 1 cut(s) 229
BstC8I GCNNGC 3 cut(s) 240, 468, 549
BstDEI CTNAG 1 cut(s) 110
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 3 cut(s) 9, 439, 459
BstMBI GATC 3 cut(s) 6, 436, 456
BstMWI GCNNNNNNNGC 2 cut(s) 48, 229
BstNI CCWGG 2 cut(s) 17, 76
BstNSI RCATGY 4 cut(s) 46, 227, 248, 562
BstSCI CCNGG 2 cut(s) 15, 74
BstSFI CTRYAG 1 cut(s) 526
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 459
Cac8I GCNNGC 3 cut(s) 240, 468, 549
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 3 cut(s) 19, 78, 391
ClaI ATCGAT 1 cut(s) 459
Csp6I GTAC 3 cut(s) 277, 302, 364
CviAII CATG 9 cut(s) 43, 127, 224, 245, 291, 338, 427, 494, 559
CviQI GTAC 3 cut(s) 277, 302, 364
DdeI CTNAG 1 cut(s) 110
DpnI GATC 3 cut(s) 8, 438, 458
DpnII GATC 3 cut(s) 6, 436, 456
Eco47I GGWCC 3 cut(s) 19, 78, 391
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 15, 74
FaeI CATG 9 cut(s) 46, 130, 227, 248, 294, 341, 430, 497, 562
FalI AAGNNNNNCTT 4 cut(s) 170, 202, 531, 563
FatI CATG 9 cut(s) 42, 126, 223, 244, 290, 337, 426, 493, 558
FbaI TGATCA 1 cut(s) 436
FblI GTMKAC 2 cut(s) 218, 249
Fnu4HI GCNGC 2 cut(s) 49, 131
Fsp4HI GCNGC 2 cut(s) 49, 131
FspBI CTAG 1 cut(s) 467
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 1 cut(s) 243
GluI GCNGC 2 cut(s) 49, 131
HhaI GCGC 1 cut(s) 244
Hin1II CATG 9 cut(s) 46, 130, 227, 248, 294, 341, 430, 497, 562
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 3 cut(s) 284, 347, 521
Hpy166II GTNNAC 3 cut(s) 22, 219, 250
Hpy188I TCNGA 3 cut(s) 113, 433, 441
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 3 cut(s) 22, 219, 250
HpyAV CCTTC 1 cut(s) 382
HpyCH4V TGCA 2 cut(s) 130, 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 229
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 9 cut(s) 46, 130, 227, 248, 294, 341, 430, 497, 562
HspAI GCGC 1 cut(s) 242
KpnI GGTACC 1 cut(s) 367
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 3 cut(s) 6, 436, 456
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 467
MalI GATC 3 cut(s) 8, 438, 458
MboI GATC 3 cut(s) 6, 436, 456
MboII GAAGA 4 cut(s) 16, 178, 190, 397
MluCI AATT 4 cut(s) 54, 93, 295, 421
MlyI GAGTC 1 cut(s) 530
MnlI CCTC 5 cut(s) 38, 74, 322, 373, 377
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 43
MspR9I CCNGG 2 cut(s) 17, 76
MvaI CCWGG 2 cut(s) 17, 76
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 48, 229
NdeII GATC 3 cut(s) 6, 436, 456
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 9 cut(s) 46, 130, 227, 248, 294, 341, 430, 497, 562
NlaIV GGNNCC 2 cut(s) 62, 365
NsbI TGCGCA 1 cut(s) 243
NspI RCATGY 4 cut(s) 46, 227, 248, 562
OliI CACNNNNGTG 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 284, 347
PkrI GCNGC 2 cut(s) 50, 132
PleI GAGTC 1 cut(s) 529
PpsI GAGTC 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 15, 74
PspGI CCWGG 2 cut(s) 15, 74
PspN4I GGNNCC 2 cut(s) 62, 365
PspPI GGNCC 3 cut(s) 19, 78, 391
RsaI GTAC 3 cut(s) 278, 303, 365
RsaNI GTAC 3 cut(s) 277, 302, 364
RseI CAYNNNNRTG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 49, 131
Sau3AI GATC 3 cut(s) 6, 436, 456
Sau96I GGNCC 3 cut(s) 19, 78, 391
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 17, 76
SetI ASST 8 cut(s) 80, 108, 135, 357, 369, 393, 468, 472
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 526
SinI GGWCC 3 cut(s) 19, 78, 391
SmiMI CAYNNNNRTG 1 cut(s) 43
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 54, 93, 295, 421
SsiI CCGC 1 cut(s) 49
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 2 cut(s) 15, 74
TaqI TCGA 1 cut(s) 459
TasI AATT 4 cut(s) 54, 93, 295, 421
TatI WGTACW 2 cut(s) 276, 301
TauI GCSGC 1 cut(s) 51
TfiI GAWTC 2 cut(s) 284, 347
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 17, 469, 493
TspGWI ACGGA 1 cut(s) 383
VpaK11BI GGWCC 3 cut(s) 19, 78, 391
XapI RAATTY 1 cut(s) 295
XceI RCATGY 4 cut(s) 46, 227, 248, 562
XmiI GTMKAC 2 cut(s) 218, 249
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 467
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.