Prupe.7G075500_v2.0.a1

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011942
Physical Location & Seq
Forward (+)
11249194 .. 11250280
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G075500.1

Sequence Viewer

Length: 654 bp
ATGGGAGTGAAAGCCCTCCAACCAACGCTTCAAGTTTTCTCTACCTTACCACCACCCTCCTCTTCTTCTTCTTCTTCATCTCCTACCTTAAGCTCCATCATGAAGATCAAAACCCTAATCCACACCATCATTTTCTCGCACGTGTGCCGCGCAATTCGGTACCTCAACAAGGCCAAATCCAAAGCAGCATCCATTTTTATCCAGATTCTCAGAGAGAGCCAACCCATGCAACTTATCTACCCTACTAAAAAAACCAAGATCAAGAAAAAGACGAAGAAGATCTTCTTTGGATCATTTCGACTGCACTACAATTGGTGCTCTTCCACGCACGTGTTGCCTGTGCCGGCACGTGTCTACGAAGGATTAACAGCAAGCACCCATTTGTACTATGATTCAACATGGAATTCAGTGATTTCCACTGATGCTCAGCAATGTGAGGAAAATCATGGGCCTGAGTCACAGCTCTCTGGGTACCTCCAATGGCTTGAGGAGGAGAAGCTCCATGGTAAGAACAATTCTATGGCTGATGAGATAGATGTGAATGAGATTGATAAGCTAGCAGATTTGTTCATTGCTCAAAGCCATGAGAAGTTCATATTGGAGAAGCAGGAATCTTACAGAAGATTCCAAGAAATGAATGCCAGAAGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

218

Amino Acids

24.82

Weight (kDa)

9.25

Isoelectric Point (pI)

55.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 159, 471
AccB1I GGYRCC 2 cut(s) 159, 471
AccI GTMKAC 1 cut(s) 354
AccII CGCG 1 cut(s) 150
AciI CCGC 1 cut(s) 148
AclWI GGATC 1 cut(s) 298
AcsI RAATTY 1 cut(s) 403
AcvI CACGTG 3 cut(s) 142, 331, 350
AfaI GTAC 3 cut(s) 161, 386, 473
AfiI CCNNNNNNNGG 1 cut(s) 169
AflII CTTAAG 1 cut(s) 88
AflIII ACRYGT 3 cut(s) 141, 330, 349
AgsI TTSAA 2 cut(s) 32, 396
AjuI GAANNNNNNNTTGG 4 cut(s) 12, 44, 581, 613
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 4 cut(s) 93, 463, 499, 556
AluI AGCT 4 cut(s) 93, 463, 499, 556
Alw21I GWGCWC 1 cut(s) 320
AlwI GGATC 1 cut(s) 298
AoxI GGCC 2 cut(s) 171, 449
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 403
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 2 cut(s) 159, 471
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 449
AsuNHI GCTAGC 1 cut(s) 556
BanI GGYRCC 2 cut(s) 159, 471
BbrPI CACGTG 3 cut(s) 142, 331, 350
Bbv12I GWGCWC 1 cut(s) 320
BbvI GCAGC 1 cut(s) 197
BccI CCATC 2 cut(s) 104, 134
BfaI CTAG 1 cut(s) 557
BfrI CTTAAG 1 cut(s) 88
BglII AGATCT 1 cut(s) 279
BisI GCNGC 2 cut(s) 148, 186
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 2 cut(s) 149, 187
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 2 cut(s) 161, 473
BmsI GCATC 2 cut(s) 197, 412
BmtI GCTAGC 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 506
BsaAI YACGTR 3 cut(s) 142, 331, 350
BsaJI CCNNGG 1 cut(s) 502
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse118I RCCGGY 1 cut(s) 343
Bse3DI GCAATG 2 cut(s) 437, 570
BseDI CCNNGG 1 cut(s) 502
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 169
BseMI GCAATG 2 cut(s) 437, 570
BseMII CTCAG 3 cut(s) 223, 440, 444
BseRI GAGGAG 3 cut(s) 49, 503, 506
BseXI GCAGC 1 cut(s) 197
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 173, 451
BshNI GGYRCC 2 cut(s) 159, 471
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 169
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 2 cut(s) 173, 451
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 4 cut(s) 105, 258, 279, 290
Bsp1720I GCTNAGC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 502
BspACI CCGC 1 cut(s) 148
BspANI GGCC 2 cut(s) 173, 451
BspCNI CTCAG 3 cut(s) 222, 439, 445
BspFNI CGCG 1 cut(s) 150
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 161, 473
BspOI GCTAGC 1 cut(s) 560
BspPI GGATC 1 cut(s) 298
BspQI GCTCTTC 1 cut(s) 325
BspT107I GGYRCC 2 cut(s) 159, 471
BspTI CTTAAG 1 cut(s) 88
BsrDI GCAATG 2 cut(s) 437, 570
BsrFI RCCGGY 1 cut(s) 343
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 502
BssMI GATC 4 cut(s) 105, 258, 279, 290
BssT1I CCWWGG 1 cut(s) 502
Bst6I CTCTTC 2 cut(s) 67, 325
BstAFI CTTAAG 1 cut(s) 88
BstAPI GCANNNNNTGC 1 cut(s) 334
BstBAI YACGTR 3 cut(s) 142, 331, 350
BstC8I GCNNGC 3 cut(s) 345, 373, 558
BstDEI CTNAG 3 cut(s) 209, 426, 453
BstDSI CCRYGG 1 cut(s) 502
BstENI CCTNNNNNAGG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 4 cut(s) 108, 261, 282, 293
BstMBI GATC 4 cut(s) 105, 258, 279, 290
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstNSI RCATGY 1 cut(s) 652
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 197
BstX2I RGATCY 1 cut(s) 279
BstYI RGATCY 1 cut(s) 279
BsuRI GGCC 2 cut(s) 173, 451
BtgI CCRYGG 1 cut(s) 502
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 2 cut(s) 414, 417
Cac8I GCNNGC 3 cut(s) 345, 373, 558
CciI TCATGA 1 cut(s) 99
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 449
Csp6I GTAC 3 cut(s) 160, 385, 472
CviAII CATG 7 cut(s) 100, 226, 399, 446, 503, 584, 649
CviQI GTAC 3 cut(s) 160, 385, 472
DdeI CTNAG 3 cut(s) 209, 426, 453
DpnI GATC 4 cut(s) 107, 260, 281, 292
DpnII GATC 4 cut(s) 105, 258, 279, 290
Eam1104I CTCTTC 2 cut(s) 67, 325
EarI CTCTTC 2 cut(s) 67, 325
Eco130I CCWWGG 1 cut(s) 502
Eco72I CACGTG 3 cut(s) 142, 331, 350
EcoNI CCTNNNNNAGG 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 403
EcoT14I CCWWGG 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 502
FaeI CATG 7 cut(s) 103, 229, 402, 449, 506, 587, 652
FalI AAGNNNNNCTT 4 cut(s) 266, 298, 269, 301
FatI CATG 7 cut(s) 99, 225, 398, 445, 502, 583, 648
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 148, 186
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 2 cut(s) 148, 186
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 151
GluI GCNGC 2 cut(s) 148, 186
HaeIII GGCC 2 cut(s) 173, 451
HapII CCGG 1 cut(s) 344
HhaI GCGC 1 cut(s) 152
Hin1II CATG 7 cut(s) 103, 229, 402, 449, 506, 587, 652
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 5 cut(s) 205, 392, 455, 611, 624
HpaII CCGG 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 355
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 3 cut(s) 100, 202, 262
Hpy8I GTNNAC 1 cut(s) 355
HpyAV CCTTC 1 cut(s) 353
HpyCH4IV ACGT 3 cut(s) 141, 330, 349
HpyCH4V TGCA 2 cut(s) 229, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 3 cut(s) 209, 426, 453
HpySE526I ACGT 3 cut(s) 141, 330, 349
Hsp92II CATG 7 cut(s) 103, 229, 402, 449, 506, 587, 652
HspAI GCGC 1 cut(s) 150
KpnI GGTACC 2 cut(s) 163, 475
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 4 cut(s) 105, 258, 279, 290
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 2 cut(s) 98, 504
LpnPI CCDG 6 cut(s) 215, 351, 357, 453, 465, 593
Lsp1109I GCAGC 1 cut(s) 197
LweI GCATC 2 cut(s) 197, 412
MaeI CTAG 1 cut(s) 557
MaeII ACGT 3 cut(s) 141, 330, 349
MaeIII GTNAC 1 cut(s) 456
MalI GATC 4 cut(s) 107, 260, 281, 292
MboI GATC 4 cut(s) 105, 258, 279, 290
MfeI CAATTG 1 cut(s) 310
MflI RGATCY 1 cut(s) 279
MhlI GDGCHC 1 cut(s) 320
MluCI AATT 4 cut(s) 153, 310, 403, 514
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 8 cut(s) 26, 67, 70, 173, 430, 481, 484, 485
MroNI GCCGGC 1 cut(s) 343
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 2 cut(s) 89, 365
MslI CAYNNNNRTG 1 cut(s) 329
MspCI CTTAAG 1 cut(s) 88
MspI CCGG 1 cut(s) 344
MunI CAATTG 1 cut(s) 310
Mva1269I GAATGC 1 cut(s) 643
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 1 cut(s) 334
NaeI GCCGGC 1 cut(s) 345
NcoI CCATGG 1 cut(s) 502
NdeII GATC 4 cut(s) 105, 258, 279, 290
NgoMIV GCCGGC 1 cut(s) 343
NheI GCTAGC 1 cut(s) 556
NlaIII CATG 7 cut(s) 103, 229, 402, 449, 506, 587, 652
NlaIV GGNNCC 2 cut(s) 161, 473
NmuCI GTSAC 1 cut(s) 456
NspI RCATGY 1 cut(s) 652
OliI CACNNNNGTG 1 cut(s) 329
PagI TCATGA 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 325
PctI GAATGC 1 cut(s) 643
PdiI GCCGGC 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 4 cut(s) 205, 392, 611, 624
PkrI GCNGC 2 cut(s) 149, 187
PleI GAGTC 1 cut(s) 463
PmaCI CACGTG 3 cut(s) 142, 331, 350
PmlI CACGTG 3 cut(s) 142, 331, 350
PpsI GAGTC 1 cut(s) 463
Ppu21I YACGTR 3 cut(s) 142, 331, 350
PspCI CACGTG 3 cut(s) 142, 331, 350
PspN4I GGNNCC 2 cut(s) 161, 473
PspPI GGNCC 1 cut(s) 449
PsuI RGATCY 1 cut(s) 279
RsaI GTAC 3 cut(s) 161, 386, 473
RsaNI GTAC 3 cut(s) 160, 385, 472
RseI CAYNNNNRTG 1 cut(s) 329
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 2 cut(s) 89, 365
SatI GCNGC 2 cut(s) 148, 186
Sau3AI GATC 4 cut(s) 105, 258, 279, 290
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 1 cut(s) 464
SduI GDGCHC 1 cut(s) 320
SfaNI GCATC 2 cut(s) 197, 412
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 2 cut(s) 88, 485
SmoI CTYRAG 2 cut(s) 88, 485
Sse9I AATT 4 cut(s) 153, 310, 403, 514
SsiI CCGC 1 cut(s) 148
SspMI CTAG 1 cut(s) 557
StyI CCWWGG 1 cut(s) 502
TaiI ACGT 3 cut(s) 144, 333, 352
TaqI TCGA 1 cut(s) 298
TasI AATT 4 cut(s) 153, 310, 403, 514
TatI WGTACW 1 cut(s) 384
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 4 cut(s) 205, 392, 611, 624
Tru1I TTAA 2 cut(s) 89, 365
Tru9I TTAA 2 cut(s) 89, 365
TscAI CASTG 2 cut(s) 414, 424
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 5 cut(s) 66, 116, 559, 583, 650
TspRI CASTG 2 cut(s) 414, 424
Vha464I CTTAAG 1 cut(s) 88
XagI CCTNNNNNAGG 1 cut(s) 167
XapI RAATTY 1 cut(s) 403
XceI RCATGY 1 cut(s) 652
XmiI GTMKAC 1 cut(s) 354
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.