AT3G57950

Cotton fibre expressed protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011942
Physical Location & Seq
Forward (+)
21460335 .. 21461211
877 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G57950.1

Sequence Viewer

Length: 546 bp
ATGCAGCTCAAATCATCATCACCATCTTCTTCTTCTTCTTCTTCATCATCATCCATGAAACTCAAAACTCTAATCCAAAACCTCCTCACACACCCTCTCTACCGTTTCCTAAGAGCTCTTGCGAAAGCCAAATCAATCTTTCTAGAGATCTCAAAACACAACAGCAACAACAAGAAACGAAAACTCATGATGCTTTTTCCAACAAAGGCTTCAAAGAACCAACGCAAGATCTTCTTCGGATCTTTCAGATTGCATTACAACTGGTGTTCCTCTCATGTTGTTCCTGTCCCTCAACCGTTTCCTTTCCCTTCTTCTTACATCAATGGTGAAGAAGAAGATGATTCTCAGCTTTCTGGCTACCTCGAGTGGCTTGAACACAAGAAGTTCGATGATGTGGAAGAGATCGGAGATGTTGTAGCTGATGGTGGTGATGACGATATTGATCATTTGGCGGATATGTTCATCGCTAATTGCCACGAGAAGTTCTTGCTCGAGAAAGTTGAATCTTACCGGAGATTTCAAGAAATGTTAGAAAGGGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

181

Amino Acids

20.87

Weight (kDa)

7.06

Isoelectric Point (pI)

57.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF761 PF05553 144 - 179 9.8e-15 Cotton fibre expressed protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011942)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42180 AT3G57950 AT5G06790
fragaria_vesca FvH4_6g22530
malus_domestica MD12G1058500.v1.1 MD14G1059200.v1.1
prunus_persica Prupe.7G075500_v2.0.a1
pyrus_communis pycom12g05220 pycom14g04810
rosa_chinensis RchiOBHm_Chr3g0479981
rosa_laevigata RLG00000023523
rosa_multiflora Rmu_sc0010444.1_g000018
rosa_roxburghii Rroxscaffold_6G00401830
rosa_rugosa Rorug03G0179700
rosa_samantha Rh3AG230900 Rh3BG263400 Rh3CG260900 Rh3DG256800
rosa_wichuraiana Rw3G020780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 452
AclWI GGATC 1 cut(s) 247
AgsI TTSAA 4 cut(s) 213, 374, 503, 521
AjuI GAANNNNNNNTTGG 2 cut(s) 193, 225
AluBI AGCT 4 cut(s) 7, 116, 349, 419
AluI AGCT 4 cut(s) 7, 116, 349, 419
Alw21I GWGCWC 1 cut(s) 118
AlwI GGATC 1 cut(s) 247
Ama87I CYCGRG 2 cut(s) 362, 491
ApeKI GCWGC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 12, 338, 440
AvaI CYCGRG 2 cut(s) 362, 491
BanII GRGCYC 1 cut(s) 118
BauI CACGAG 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 31, 416
BclI TGATCA 1 cut(s) 442
BfaI CTAG 1 cut(s) 143
BglII AGATCT 2 cut(s) 147, 228
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmeT110I CYCGRG 2 cut(s) 362, 491
BmsI GCATC 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 441
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bse1I ACTGG 1 cut(s) 266
Bse8I GATNNNNATC 1 cut(s) 441
BseGI GGATG 1 cut(s) 50
BseJI GATNNNNATC 1 cut(s) 441
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 2 cut(s) 362, 491
BsiSI CCGG 1 cut(s) 511
BslFI GGGAC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 272
BsoBI CYCGRG 2 cut(s) 362, 491
Bsp1286I GDGCHC 1 cut(s) 118
Bsp143I GATC 5 cut(s) 147, 228, 239, 402, 442
BspACI CCGC 1 cut(s) 452
BspCNI CTCAG 1 cut(s) 358
BspHI TCATGA 1 cut(s) 186
BspPI GGATC 1 cut(s) 247
BsrI ACTGG 1 cut(s) 266
BssMI GATC 5 cut(s) 147, 228, 239, 402, 442
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst4CI ACNGT 2 cut(s) 104, 297
Bst6I CTCTTC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 110, 345
BstF5I GGATG 1 cut(s) 50
BstKTI GATC 5 cut(s) 150, 231, 242, 405, 445
BstMBI GATC 5 cut(s) 147, 228, 239, 402, 442
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 3 cut(s) 147, 228, 239
BstYI RGATCY 3 cut(s) 147, 228, 239
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 1 cut(s) 50
CciI TCATGA 1 cut(s) 186
CviAII CATG 3 cut(s) 55, 187, 275
CviJI RGCY 8 cut(s) 7, 116, 128, 209, 349, 357, 370, 419
CviKI_1 RGCY 8 cut(s) 7, 116, 128, 209, 349, 357, 370, 419
DdeI CTNAG 2 cut(s) 110, 345
DpnI GATC 5 cut(s) 149, 230, 241, 404, 444
DpnII GATC 5 cut(s) 147, 228, 239, 402, 442
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
EciI GGCGGA 1 cut(s) 467
Ecl136II GAGCTC 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 118
Eco53kI GAGCTC 1 cut(s) 116
Eco88I CYCGRG 2 cut(s) 362, 491
EcoICRI GAGCTC 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 118
FaeI CATG 3 cut(s) 58, 190, 278
FaiI YATR 4 cut(s) 56, 188, 276, 458
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 1 cut(s) 272
FatI CATG 3 cut(s) 54, 186, 274
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 118
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 143
GluI GCNGC 1 cut(s) 5
HapII CCGG 1 cut(s) 511
Hin1II CATG 3 cut(s) 58, 190, 278
HinfI GANTC 2 cut(s) 341, 503
HpaII CCGG 1 cut(s) 511
HphI GGTGA 3 cut(s) 12, 338, 440
Hpy188I TCNGA 3 cut(s) 239, 248, 407
Hpy188III TCNNGA 4 cut(s) 143, 187, 493, 521
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 2 cut(s) 104, 297
HpyCH4V TGCA 2 cut(s) 4, 253
HpyF3I CTNAG 2 cut(s) 110, 345
Hsp92II CATG 3 cut(s) 58, 190, 278
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 5 cut(s) 147, 228, 239, 402, 442
LpnPI CCDG 4 cut(s) 247, 297, 339, 524
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 143
MalI GATC 5 cut(s) 149, 230, 241, 404, 444
MboI GATC 5 cut(s) 147, 228, 239, 402, 442
MflI RGATCY 3 cut(s) 147, 228, 239
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 6 cut(s) 92, 95, 105, 280, 300, 371
MspI CCGG 1 cut(s) 511
NdeII GATC 5 cut(s) 147, 228, 239, 402, 442
NlaIII CATG 3 cut(s) 58, 190, 278
PaeR7I CTCGAG 2 cut(s) 362, 491
PagI TCATGA 1 cut(s) 186
PfeI GAWTC 2 cut(s) 341, 503
PkrI GCNGC 1 cut(s) 6
Psp124BI GAGCTC 1 cut(s) 118
PspXI VCTCGAGB 1 cut(s) 362
PsuI RGATCY 3 cut(s) 147, 228, 239
SacI GAGCTC 1 cut(s) 118
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 5 cut(s) 147, 228, 239, 402, 442
SduI GDGCHC 1 cut(s) 118
SetI ASST 6 cut(s) 9, 84, 118, 351, 363, 421
SfaNI GCATC 1 cut(s) 180
Sfr274I CTCGAG 2 cut(s) 362, 491
SlaI CTCGAG 2 cut(s) 362, 491
SmlI CTYRAG 2 cut(s) 362, 491
SmoI CTYRAG 2 cut(s) 362, 491
Sse9I AATT 1 cut(s) 469
SsiI CCGC 1 cut(s) 452
SspMI CTAG 1 cut(s) 143
SstI GAGCTC 1 cut(s) 118
TaaI ACNGT 2 cut(s) 104, 297
TaqI TCGA 3 cut(s) 363, 387, 492
TasI AATT 1 cut(s) 469
TfiI GAWTC 2 cut(s) 341, 503
TseI GCWGC 1 cut(s) 4
TspDTI ATGAA 3 cut(s) 33, 71, 451
XbaI TCTAGA 1 cut(s) 142
XhoI CTCGAG 2 cut(s) 362, 491
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.