AT2G42590

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004001
Physical Location & Seq
Reverse (-)
17731830 .. 17733982
2153 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42590.2

Sequence Viewer

Length: 792 bp
ATGGGTTCTGGAAAAGAGCGTGACACTTTCGTCTACCTCGCTAAGCTCTCTGAGCAAGCTGAGCGTTATGAAGAAATGGTGGAATCAATGAAAAGTGTTGCGAAATTGAATGTTGATCTGACGGTGGAAGAGAGGAACTTACTCTCTGTGGGTTACAAGAACGTGATTGGTTCAAGGAGAGCTTCGTGGAGGATCTTCTCGTCGATTGAACAAAAGGAAGCAGTGAAAGGGAATGATGTTAATGTAAAGAGGATCAAAGAGTATATGGAGAAGGTTGAGTTAGAGCTTTCTAACATATGCATTGATATTATGTCTGTCTTAGATGAGCATCTCATTCCTTCGGCTTCCGAGGGTGAATCTACTGTCTTCTTCAACAAGATGAAAGGTGACTATTACCGCTATCTTGCTGAGTTCAAATCAGGGAACGAGAGGAAAGAGGCTGCTGATCAGTCTTTGAAAGCCTATGAGATTGCTACTACTGCTGCTGAGGCTAAGCTCCCTCCAACACACCCTATCAGATTGGGTTTGGCTTTGAATTTCTCTGTCTTCTACTACGAGATCATGAACGCACCTGAAAGGGCATGTCACCTTGCTAAGCAGGCGTTCGATGAAGCTATCTCAGAGCTTGACACTCTGAACGAGGAATCCTACAAAGATAGCACCTTAATAATGCAACTCCTTAGGGACAATCTGACCTTGTGGACTTCTGACATCTCAGAAGAAGGAGGAGACGATGCTCATAAGACGAATGGTTCTGCCAAACCTGGTGCTGGTGGAGACGATGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

263

Amino Acids

29.52

Weight (kDa)

4.86

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
14-3-3 PF00244 13 - 235 1.8e-104 14-3-3 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 29
AccI GTMKAC 1 cut(s) 33
AciI CCGC 1 cut(s) 397
AclWI GGATC 2 cut(s) 200, 260
AcsI RAATTY 1 cut(s) 535
AfiI CCNNNNNNNGG 1 cut(s) 770
AgsI TTSAA 7 cut(s) 109, 174, 209, 373, 415, 457, 535
AjnI CCWGG 1 cut(s) 763
AloI GAACNNNNNNTCC 2 cut(s) 629, 661
AluBI AGCT 7 cut(s) 46, 59, 182, 286, 496, 614, 625
AluI AGCT 7 cut(s) 46, 59, 182, 286, 496, 614, 625
Alw26I GTCTC 2 cut(s) 723, 771
AlwI GGATC 2 cut(s) 200, 260
ApeKI GCWGC 2 cut(s) 440, 482
ApoI RAATTY 1 cut(s) 535
AsuHPI GGTGA 3 cut(s) 365, 398, 578
AxyI CCTNAGG 1 cut(s) 680
BbsI GAAGAC 2 cut(s) 358, 538
BbvCI CCTCAGC 1 cut(s) 486
BbvI GCAGC 2 cut(s) 427, 469
BciT130I CCWGG 1 cut(s) 765
BclI TGATCA 1 cut(s) 445
BcoDI GTCTC 2 cut(s) 723, 771
BisI GCNGC 2 cut(s) 441, 483
BlpI GCTNAGC 4 cut(s) 42, 60, 492, 594
BlsI GCNGC 2 cut(s) 442, 484
Bme1390I CCNGG 1 cut(s) 765
BmrFI CCNGG 1 cut(s) 765
BmsI GCATC 3 cut(s) 337, 724, 772
BpiI GAAGAC 2 cut(s) 358, 538
Bpu10I CCTNAGC 1 cut(s) 486
Bpu1102I GCTNAGC 4 cut(s) 42, 60, 492, 594
BsaBI GATNNNNATC 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 1 cut(s) 770
Bse21I CCTNAGG 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 327
BseBI CCWGG 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 348
BseJI GATNNNNATC 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 770
BseMII CTCAG 6 cut(s) 42, 51, 399, 477, 633, 729
BseRI GAGGAG 1 cut(s) 741
BseXI GCAGC 2 cut(s) 427, 469
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 770
BsmAI GTCTC 2 cut(s) 723, 771
BsmBI CGTCTC 2 cut(s) 723, 771
BsmFI GGGAC 1 cut(s) 698
Bsp143I GATC 5 cut(s) 115, 192, 252, 445, 558
Bsp1720I GCTNAGC 4 cut(s) 42, 60, 492, 594
BspACI CCGC 1 cut(s) 397
BspCNI CTCAG 6 cut(s) 43, 52, 400, 478, 632, 728
BspHI TCATGA 1 cut(s) 561
BspPI GGATC 2 cut(s) 200, 260
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 5 cut(s) 115, 192, 252, 445, 558
Bst2UI CCWGG 1 cut(s) 765
Bst4CI ACNGT 2 cut(s) 124, 364
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 57, 600
BstKTI GATC 5 cut(s) 118, 195, 255, 448, 561
BstMAI GTCTC 2 cut(s) 723, 771
BstMBI GATC 5 cut(s) 115, 192, 252, 445, 558
BstMWI GCNNNNNNNGC 5 cut(s) 52, 61, 479, 488, 599
BstNI CCWGG 1 cut(s) 765
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 763
BstV1I GCAGC 2 cut(s) 427, 469
BstV2I GAAGAC 2 cut(s) 358, 538
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu36I CCTNAGG 1 cut(s) 680
BtsI GCAGTG 1 cut(s) 228
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 2 cut(s) 57, 600
CciI TCATGA 1 cut(s) 561
CsiI ACCWGGT 1 cut(s) 763
CviAII CATG 2 cut(s) 562, 582
DpnI GATC 5 cut(s) 117, 194, 254, 447, 560
DpnII GATC 5 cut(s) 115, 192, 252, 445, 558
DrdI GACNNNNNNGTC 1 cut(s) 29
DseDI GACNNNNNNGTC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 763
EcoT22I ATGCAT 1 cut(s) 302
Esp3I CGTCTC 2 cut(s) 723, 771
FaeI CATG 2 cut(s) 565, 585
FalI AAGNNNNNCTT 2 cut(s) 166, 198
FaqI GGGAC 1 cut(s) 698
FatI CATG 2 cut(s) 561, 581
FauNDI CATATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 2 cut(s) 441, 483
Fsp4HI GCNGC 2 cut(s) 441, 483
GluI GCNGC 2 cut(s) 441, 483
Hin1II CATG 2 cut(s) 565, 585
HinfI GANTC 3 cut(s) 83, 356, 644
HphI GGTGA 3 cut(s) 365, 398, 578
Hpy166II GTNNAC 2 cut(s) 34, 702
Hpy188I TCNGA 9 cut(s) 52, 120, 349, 518, 622, 636, 693, 709, 718
Hpy188III TCNNGA 2 cut(s) 9, 562
Hpy8I GTNNAC 2 cut(s) 34, 702
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 3 cut(s) 265, 348, 716
HpyCH4III ACNGT 2 cut(s) 124, 364
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 3 cut(s) 300, 673, 785
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 61, 479, 488, 599
HpySE526I ACGT 1 cut(s) 162
Hsp92II CATG 2 cut(s) 565, 585
Ksp22I TGATCA 1 cut(s) 445
Kzo9I GATC 5 cut(s) 115, 192, 252, 445, 558
LmnI GCTCC 1 cut(s) 501
LpnPI CCDG 6 cut(s) 405, 584, 585, 750, 756, 777
Lsp1109I GCAGC 2 cut(s) 427, 469
LweI GCATC 3 cut(s) 337, 724, 772
MabI ACCWGGT 1 cut(s) 763
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 4 cut(s) 20, 152, 386, 584
MalI GATC 5 cut(s) 117, 194, 254, 447, 560
MboI GATC 5 cut(s) 115, 192, 252, 445, 558
MboII GAAGA 7 cut(s) 83, 140, 187, 358, 361, 538, 731
MflI RGATCY 1 cut(s) 192
MluCI AATT 2 cut(s) 104, 535
MmeI TCCRAC 1 cut(s) 527
Mph1103I ATGCAT 1 cut(s) 302
MseI TTAA 2 cut(s) 240, 665
MspR9I CCNGG 1 cut(s) 765
MvaI CCWGG 1 cut(s) 765
MwoI GCNNNNNNNGC 5 cut(s) 52, 61, 479, 488, 599
NdeI CATATG 1 cut(s) 296
NdeII GATC 5 cut(s) 115, 192, 252, 445, 558
NlaIII CATG 2 cut(s) 565, 585
NmuCI GTSAC 3 cut(s) 20, 386, 584
NsiI ATGCAT 1 cut(s) 302
NspI RCATGY 1 cut(s) 585
PagI TCATGA 1 cut(s) 561
PfeI GAWTC 3 cut(s) 83, 356, 644
PkrI GCNGC 2 cut(s) 442, 484
Psp6I CCWGG 1 cut(s) 763
PspGI CCWGG 1 cut(s) 763
PsuI RGATCY 1 cut(s) 192
SaqAI TTAA 2 cut(s) 240, 665
SatI GCNGC 2 cut(s) 441, 483
Sau3AI GATC 5 cut(s) 115, 192, 252, 445, 558
ScrFI CCNGG 1 cut(s) 765
SexAI ACCWGGT 1 cut(s) 763
SfaNI GCATC 3 cut(s) 337, 724, 772
Sse9I AATT 2 cut(s) 104, 535
SsiI CCGC 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 763
TaaI ACNGT 2 cut(s) 124, 364
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 203, 606
TasI AATT 2 cut(s) 104, 535
TfiI GAWTC 3 cut(s) 83, 356, 644
Tru1I TTAA 2 cut(s) 240, 665
Tru9I TTAA 2 cut(s) 240, 665
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 3 cut(s) 20, 386, 584
TseI GCWGC 2 cut(s) 440, 482
Tsp45I GTSAC 3 cut(s) 20, 386, 584
TspDTI ATGAA 5 cut(s) 84, 104, 395, 578, 624
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 535
XceI RCATGY 1 cut(s) 585
XmiI GTMKAC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.