Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004001

Physical Location & Seq

Genomic Coordinates Forward (+)

15772620 .. 15776342

Gene Structure 3723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g15690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGTCTCGCTACTGAACGTGAAAACTTCGCTTACCTTGCCAAGCTCGCTGAGCAGGCAGAGCGATACGATGAGATGGTTGATGCAATGAAGAAGGTCGCAAATCTTGATGTTGAATTGACGGTTGAAGAGAGAAACTTGCTCTCTGTTGGGTACAAGAATGTTGTTGGTGCTCGTCGCGCCTCATGGAGGATCCGATCATCAATTGAACAGAAAGAGGAAGCAAAAGGAAATGAGATTCATGTGAAGCAACTCAAGGAGTATAGACAGAAGGTTGAATCAGAGCTCTCAACCATTTGTAGTGATATCATCGGAGTGATCGATGAGCATCTCATTCCTTCTGCTACAGTTGGTGAATCAACTGTTTTCTATTATAAGATGAAAGGAGATTACTATAGGTATCTCGCAGAATTCAAGAGCGGTGACGATAAAAAAGAGGCTGCTGAACAGTCAAAGAAAGCATACGAGACTGCCACCACCACTGCTGAGGCCGAGTTGCCTTCCACGCATCCCATCCGTTTGGGTCTGGCTCTGAATTTCTCAGTCTTCTATTATGAGATCATGAATGCTCCAGAAAGTGCTTGCCACCTTGCAAAGATGGCTTTTGATGAAGCTATTGCTGAGCTTGACTCTTCGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAGCTTTTAAGGGACAACCTCGCATTGTGGACTTCTGACCATCCAGAAGATGGAGAGGATTCCCAAAAGGTGAATGGCAATGCCAAGGTTGGCGAGTTGGAAGAGGCAAACTCACAGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

266

Amino Acids

29.85

Weight (kDa)

4.78

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42590 AT2G42590 AT2G42590
fragaria_vesca	FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810
malus_domestica	MD00G1176300.v1.1 MD05G1301400.v1.1 MD10G1280300.v1.1 MD17G1231000.v1.1
prunus_persica	Prupe.3G121100_v2.0.a1 Prupe.3G121100_v2.0.a1 Prupe.3G121100_v2.0.a1 Prupe.4G061000_v2.0.a1 Prupe.4G061000_v2.0.a1
pyrus_communis	pycom09g15690 pycom10g23410 pycom17g23420
rosa_chinensis	RchiOBHm_Chr5g0010761
rosa_laevigata	RLG00000031777
rosa_multiflora	Rmu_sc0000109.1_g000023
rosa_roxburghii	Rroxscaffold_1G00065620
rosa_rugosa	Rorug04G0452100 Rorug04G0452100
rosa_samantha	Rh5AG083900 Rh5BG079100 Rh5CG091900 Rh5DG079300
rosa_wichuraiana	Rw0G000590 Rw0G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB7I	CCANNNNNTGG	1 cut(s)	722
AccBSI	CCGCTC	1 cut(s)	420
AccII	CGCG	1 cut(s)	180
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	2 cut(s)	187, 200
AcsI	RAATTY	2 cut(s)	410, 535
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	2 cut(s)	189, 722
AgsI	TTSAA	5 cut(s)	116, 128, 209, 278, 415
AluBI	AGCT	5 cut(s)	46, 286, 614, 625, 676
AluI	AGCT	5 cut(s)	46, 286, 614, 625, 676
Alw21I	GWGCWC	2 cut(s)	175, 288
Alw26I	GTCTC	2 cut(s)	11, 461
AlwI	GGATC	2 cut(s)	187, 200
AoxI	GGCC	1 cut(s)	489
ApeKI	GCWGC	2 cut(s)	440, 673
ApoI	RAATTY	2 cut(s)	410, 535
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	365, 434, 754
AsuII	TTCGAA	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	1 cut(s)	538
Bbv12I	GWGCWC	2 cut(s)	175, 288
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	2 cut(s)	427, 685
BccI	CCATC	5 cut(s)	70, 521, 592, 716, 720
BcoDI	GTCTC	2 cut(s)	11, 461
BfmI	CTRYAG	2 cut(s)	345, 394
BisI	GCNGC	2 cut(s)	441, 674
BlpI	GCTNAGC	2 cut(s)	51, 621
BlsI	GCNGC	2 cut(s)	442, 675
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	3 cut(s)	73, 337, 517
BpiI	GAAGAC	1 cut(s)	538
BplI	GAGNNNNNCTC	3 cut(s)	614, 646, 767
BpmI	CTGGAG	1 cut(s)	555
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	2 cut(s)	51, 621
Bpu14I	TTCGAA	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	239
Bsa29I	ATCGAT	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	756
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 722
Bse3DI	GCAATG	2 cut(s)	93, 757
Bse8I	GATNNNNATC	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	756
BseGI	GGATG	3 cut(s)	508, 513, 712
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	189, 722
BseMI	GCAATG	2 cut(s)	93, 757
BseMII	CTCAG	4 cut(s)	42, 477, 555, 612
BseRI	GAGGAG	1 cut(s)	656
BseXI	GCAGC	2 cut(s)	427, 685
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	491
BshVI	ATCGAT	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	175, 288
BslFI	GGGAC	1 cut(s)	698
BslI	CCNNNNNNNGG	2 cut(s)	189, 722
BsmAI	GTCTC	2 cut(s)	11, 461
BsmFI	GGGAC	1 cut(s)	698
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	491
Bso31I	GGTCTC	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	635
Bsp1286I	GDGCHC	2 cut(s)	175, 288
Bsp143I	GATC	4 cut(s)	192, 197, 318, 558
Bsp1720I	GCTNAGC	2 cut(s)	51, 621
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	491
BspCNI	CTCAG	4 cut(s)	43, 478, 554, 613
BspDI	ATCGAT	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	180
BspHI	TCATGA	1 cut(s)	561
BspLI	GGNNCC	1 cut(s)	194
BspPI	GGATC	2 cut(s)	187, 200
BspT104I	TTCGAA	1 cut(s)	635
BspTNI	GGTCTC	1 cut(s)	11
BsrBI	CCGCTC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	93, 757
BssECI	CCNNGG	1 cut(s)	756
BssMI	GATC	4 cut(s)	192, 197, 318, 558
BssT1I	CCWWGG	1 cut(s)	756
Bst4CI	ACNGT	4 cut(s)	124, 349, 364, 450
Bst6I	CTCTTC	3 cut(s)	123, 637, 768
BstBI	TTCGAA	1 cut(s)	635
BstC8I	GCNNGC	3 cut(s)	48, 57, 583
BstDEI	CTNAG	5 cut(s)	51, 486, 541, 621, 795
BstENI	CCTNNNNNAGG	1 cut(s)	187
BstF5I	GGATG	3 cut(s)	508, 513, 712
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	4 cut(s)	195, 200, 321, 561
BstMAI	GTCTC	2 cut(s)	11, 461
BstMBI	GATC	4 cut(s)	192, 197, 318, 558
BstMWI	GCNNNNNNNGC	8 cut(s)	38, 47, 52, 56, 61, 179, 505, 599
BstSFI	CTRYAG	2 cut(s)	345, 394
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	427, 685
BstV2I	GAAGAC	1 cut(s)	538
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	491
BsuTUI	ATCGAT	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	508, 513, 712
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
Cac8I	GCNNGC	3 cut(s)	48, 57, 583
CciI	TCATGA	1 cut(s)	561
CfoI	GCGC	1 cut(s)	182
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	4 cut(s)	186, 242, 562, 670
CviJI	RGCY	9 cut(s)	46, 286, 440, 491, 530, 602, 614, 625, 676
CviKI_1	RGCY	9 cut(s)	46, 286, 440, 491, 530, 602, 614, 625, 676
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	5 cut(s)	51, 486, 541, 621, 795
DpnI	GATC	4 cut(s)	194, 199, 320, 560
DpnII	GATC	4 cut(s)	192, 197, 318, 558
Eam1104I	CTCTTC	3 cut(s)	123, 637, 768
EarI	CTCTTC	3 cut(s)	123, 637, 768
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	756
Eco24I	GRGCYC	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	307
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoNI	CCTNNNNNAGG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	756
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	756
FaeI	CATG	4 cut(s)	189, 245, 565, 673
FaqI	GGGAC	1 cut(s)	698
FatI	CATG	4 cut(s)	185, 241, 561, 669
Fnu4HI	GCNGC	2 cut(s)	441, 674
FokI	GGATG	3 cut(s)	495, 500, 699
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	441, 674
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	2 cut(s)	441, 674
GsuI	CTGGAG	1 cut(s)	555
HaeIII	GGCC	1 cut(s)	491
HhaI	GCGC	1 cut(s)	182
Hin1II	CATG	4 cut(s)	189, 245, 565, 673
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	6 cut(s)	238, 278, 356, 629, 644, 731
HphI	GGTGA	3 cut(s)	365, 434, 754
Hpy166II	GTNNAC	1 cut(s)	702
Hpy188I	TCNGA	5 cut(s)	197, 283, 314, 534, 709
Hpy188III	TCNNGA	5 cut(s)	107, 415, 562, 572, 716
Hpy8I	GTNNAC	1 cut(s)	702
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	4 cut(s)	88, 265, 348, 510
HpyCH4III	ACNGT	4 cut(s)	124, 349, 364, 450
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	3 cut(s)	86, 593, 673
HpyF10VI	GCNNNNNNNGC	8 cut(s)	38, 47, 52, 56, 61, 179, 505, 599
HpyF3I	CTNAG	5 cut(s)	51, 486, 541, 621, 795
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	4 cut(s)	189, 245, 565, 673
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	4 cut(s)	192, 197, 318, 558
LmnI	GCTCC	1 cut(s)	574
LpnPI	CCDG	4 cut(s)	41, 512, 585, 729
Lsp1109I	GCAGC	2 cut(s)	427, 685
LweI	GCATC	3 cut(s)	73, 337, 517
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	422
MalI	GATC	4 cut(s)	194, 199, 320, 560
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	4 cut(s)	192, 197, 318, 558
MboII	GAAGA	6 cut(s)	103, 140, 538, 624, 731, 785
MfeI	CAATTG	1 cut(s)	204
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	2 cut(s)	175, 288
MluCI	AATT	4 cut(s)	116, 204, 410, 535
MlyI	GAGTC	2 cut(s)	623, 653
MmeI	TCCRAC	1 cut(s)	750
MnlI	CCTC	9 cut(s)	183, 193, 211, 430, 481, 634, 701, 721, 769
MseI	TTAA	2 cut(s)	665, 680
MslI	CAYNNNNRTG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	204
Mva1269I	GAATGC	1 cut(s)	571
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	8 cut(s)	38, 47, 52, 56, 61, 179, 505, 599
NdeII	GATC	4 cut(s)	192, 197, 318, 558
NlaIII	CATG	4 cut(s)	189, 245, 565, 673
NlaIV	GGNNCC	1 cut(s)	194
NmeAIII	GCCGAG	1 cut(s)	517
NmuCI	GTSAC	1 cut(s)	422
NspV	TTCGAA	1 cut(s)	635
PagI	TCATGA	1 cut(s)	561
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	4 cut(s)	238, 278, 356, 731
PflMI	CCANNNNNTGG	1 cut(s)	722
PkrI	GCNGC	2 cut(s)	442, 675
PleI	GAGTC	2 cut(s)	623, 652
PpsI	GAGTC	2 cut(s)	623, 652
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	194
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	665, 680
SatI	GCNGC	2 cut(s)	441, 674
Sau3AI	GATC	4 cut(s)	192, 197, 318, 558
SchI	GAGTC	2 cut(s)	623, 653
SduI	GDGCHC	2 cut(s)	175, 288
SfaNI	GCATC	3 cut(s)	73, 337, 517
SfcI	CTRYAG	2 cut(s)	345, 394
SfuI	TTCGAA	1 cut(s)	635
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	4 cut(s)	116, 204, 410, 535
SsiI	CCGC	1 cut(s)	420
SstI	GAGCTC	1 cut(s)	288
StyI	CCWWGG	1 cut(s)	756
TaaI	ACNGT	4 cut(s)	124, 349, 364, 450
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	2 cut(s)	321, 635
TasI	AATT	4 cut(s)	116, 204, 410, 535
TfiI	GAWTC	4 cut(s)	238, 278, 356, 731
Tru1I	TTAA	2 cut(s)	665, 680
Tru9I	TTAA	2 cut(s)	665, 680
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	440, 673
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	5 cut(s)	104, 230, 395, 578, 624
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	722
XagI	CCTNNNNNAGG	1 cut(s)	187
XapI	RAATTY	2 cut(s)	410, 535
XcmI	CCANNNNNNNNNTGG	2 cut(s)	719, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.