Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000109.1

Orthogroup ID

OG0004001

Physical Location & Seq

Genomic Coordinates Reverse (-)

110351 .. 113533

Gene Structure 3183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000109.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggtggaggcgatgacgaaagtggcgaagcttgacgtggagctgactatcgaggagcggaatctgctgtctgtggggtacaagaacgtgatcggagcacggagggcttcgtggaggatactgtcgtcgattgagcagaaggaggagagcaaagggaatgagcagaatgtgagccgtatcaaggagtacaggaacaaggtggagactgagctctccagcatttgcagtgacatcatgagggttattgatgagcatctccttccgtcttgctcggctttcgagtccactgtgttcttctacaaaatgaaaggagattactatcgctacttggctgagtttaagactggtgatgacaggaaggaggttgctgatcagtcaatgaaggcttatcaggcagcttctagcaaagcagagactgatttacctcccacacatcccatcaggctgggattggccttgaacttctctgtcttttactatgaaatcttgaattctcctgaaagagcttgtcatcttgcaaagcaagcctttgatgaagctatctccgagctggatactttgagtgaggagtcatacaaggacagcaccttaatcatgcaactcttgagggacaacctcacattgtggacctctgacattccggaggatggagttgaagaagggcagaaggcggacagctctgcaaaaactggaggtgaagatgcagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

236

Amino Acids

26.71

Weight (kDa)

4.8

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42590 AT2G42590 AT2G42590
fragaria_vesca	FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810
malus_domestica	MD00G1176300.v1.1 MD05G1301400.v1.1 MD10G1280300.v1.1 MD17G1231000.v1.1
prunus_persica	Prupe.3G121100_v2.0.a1 Prupe.3G121100_v2.0.a1 Prupe.3G121100_v2.0.a1 Prupe.4G061000_v2.0.a1 Prupe.4G061000_v2.0.a1
pyrus_communis	pycom09g15690 pycom10g23410 pycom17g23420
rosa_chinensis	RchiOBHm_Chr5g0010761
rosa_laevigata	RLG00000031777
rosa_multiflora	Rmu_sc0000109.1_g000023
rosa_roxburghii	Rroxscaffold_1G00065620
rosa_rugosa	Rorug04G0452100 Rorug04G0452100
rosa_samantha	Rh5AG083900 Rh5BG079100 Rh5CG091900 Rh5DG079300
rosa_wichuraiana	Rw0G000590 Rw0G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	58
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	2 cut(s)	58, 671
AcsI	RAATTY	1 cut(s)	490
AdeI	CACNNNGTG	1 cut(s)	624
AfaI	GTAC	2 cut(s)	80, 188
AfiI	CCNNNNNNNGG	2 cut(s)	181, 647
AgsI	TTSAA	3 cut(s)	460, 490, 656
AjiI	CACGTC	1 cut(s)	37
AluBI	AGCT	8 cut(s)	31, 43, 211, 398, 506, 539, 550, 678
AluI	AGCT	8 cut(s)	31, 43, 211, 398, 506, 539, 550, 678
Alw21I	GWGCWC	2 cut(s)	100, 213
Alw26I	GTCTC	2 cut(s)	197, 407
AlwNI	CAGNNNCTG	1 cut(s)	416
Aor13HI	TCCGGA	1 cut(s)	640
AoxI	GGCC	1 cut(s)	453
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	627
AsuHPI	GGTGA	2 cut(s)	359, 707
AvaII	GGWCC	1 cut(s)	627
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BanII	GRGCYC	1 cut(s)	213
Bbv12I	GWGCWC	2 cut(s)	100, 213
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	446, 641
BceAI	ACGGC	1 cut(s)	159
BciVI	GTATCC	2 cut(s)	111, 547
BclI	TGATCA	1 cut(s)	370
BcoDI	GTCTC	2 cut(s)	197, 407
BfaI	CTAG	1 cut(s)	402
BfuI	GTATCC	2 cut(s)	111, 547
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme18I	GGWCC	1 cut(s)	627
BmgBI	CACGTC	1 cut(s)	37
BmgT120I	GGNCC	1 cut(s)	627
BmsI	GCATC	2 cut(s)	262, 691
BpmI	CTGGAG	2 cut(s)	199, 711
BpuEI	CTTGAG	1 cut(s)	625
BsaBI	GATNNNNATC	2 cut(s)	252, 318
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 647
Bse1I	ACTGG	2 cut(s)	349, 694
Bse8I	GATNNNNATC	2 cut(s)	252, 318
BseAI	TCCGGA	1 cut(s)	640
BseGI	GGATG	2 cut(s)	433, 652
BseJI	GATNNNNATC	2 cut(s)	252, 318
BseLI	CCNNNNNNNGG	2 cut(s)	181, 647
BseMII	CTCAG	2 cut(s)	198, 324
BseNI	ACTGG	2 cut(s)	349, 694
BseRI	GAGGAG	3 cut(s)	68, 158, 581
BseXI	GCAGC	1 cut(s)	407
BseYI	CCCAGC	1 cut(s)	445
BshFI	GGCC	1 cut(s)	455
BsiHKAI	GWGCWC	2 cut(s)	100, 213
BsiSI	CCGG	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	623
BslI	CCNNNNNNNGG	2 cut(s)	181, 647
BsmAI	GTCTC	2 cut(s)	197, 407
BsmFI	GGGAC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	100, 213
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	2 cut(s)	90, 370
BspACI	CCGC	2 cut(s)	58, 671
BspANI	GGCC	1 cut(s)	455
BspCNI	CTCAG	2 cut(s)	199, 325
BspEI	TCCGGA	1 cut(s)	640
BspHI	TCATGA	1 cut(s)	234
BsrBI	CCGCTC	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	349, 694
BssMI	GATC	2 cut(s)	90, 370
Bst4CI	ACNGT	2 cut(s)	123, 289
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	207, 333
BstF5I	GGATG	2 cut(s)	433, 652
BstKTI	GATC	2 cut(s)	93, 373
BstMAI	GTCTC	2 cut(s)	197, 407
BstMBI	GATC	2 cut(s)	90, 370
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 104, 392, 524
BstV1I	GCAGC	1 cut(s)	407
BstXI	CCANNNNNNTGG	1 cut(s)	445
BsuI	GTATCC	2 cut(s)	111, 547
BsuRI	GGCC	1 cut(s)	455
BtgZI	GCGATG	1 cut(s)	26
BtrI	CACGTC	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	433, 652
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	2 cut(s)	232, 285
Cac8I	GCNNGC	1 cut(s)	525
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	627
Csp6I	GTAC	2 cut(s)	79, 187
CviAII	CATG	2 cut(s)	235, 595
CviQI	GTAC	2 cut(s)	79, 187
DdeI	CTNAG	2 cut(s)	207, 333
DpnI	GATC	2 cut(s)	92, 372
DpnII	GATC	2 cut(s)	90, 370
DraIII	CACNNNGTG	1 cut(s)	624
EciI	GGCGGA	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	211
Eco24I	GRGCYC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	213
FaeI	CATG	2 cut(s)	238, 598
FaiI	YATR	4 cut(s)	236, 480, 574, 596
FalI	AAGNNNNNCTT	2 cut(s)	512, 544
FaqI	GGGAC	1 cut(s)	623
FatI	CATG	2 cut(s)	234, 594
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	420, 659
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	1 cut(s)	402
GluI	GCNGC	1 cut(s)	396
GsaI	CCCAGC	1 cut(s)	449
GsuI	CTGGAG	2 cut(s)	199, 711
HaeIII	GGCC	1 cut(s)	455
HapII	CCGG	1 cut(s)	641
Hin1II	CATG	2 cut(s)	238, 598
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	61, 281, 569
HpaII	CCGG	1 cut(s)	641
HphI	GGTGA	2 cut(s)	359, 707
Hpy166II	GTNNAC	2 cut(s)	285, 627
Hpy188I	TCNGA	3 cut(s)	95, 547, 634
Hpy188III	TCNNGA	5 cut(s)	235, 487, 497, 604, 641
Hpy8I	GTNNAC	2 cut(s)	285, 627
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	6 cut(s)	133, 269, 352, 376, 653, 661
HpyCH4III	ACNGT	2 cut(s)	123, 289
HpyCH4IV	ACGT	2 cut(s)	36, 87
HpyCH4V	TGCA	5 cut(s)	225, 518, 598, 683, 704
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 104, 392, 524
HpyF3I	CTNAG	2 cut(s)	207, 333
HpySE526I	ACGT	2 cut(s)	36, 87
Hsp92II	CATG	2 cut(s)	238, 598
Kpn2I	TCCGGA	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	2 cut(s)	90, 370
LmnI	GCTCC	3 cut(s)	40, 55, 95
Lsp1109I	GCAGC	1 cut(s)	407
LweI	GCATC	2 cut(s)	262, 691
MaeI	CTAG	1 cut(s)	402
MaeII	ACGT	2 cut(s)	36, 87
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	2 cut(s)	92, 372
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	2 cut(s)	90, 370
MboII	GAAGA	3 cut(s)	286, 668, 710
MhlI	GDGCHC	2 cut(s)	100, 213
MluCI	AATT	1 cut(s)	490
MlyI	GAGTC	2 cut(s)	290, 578
MroI	TCCGGA	1 cut(s)	640
MseI	TTAA	2 cut(s)	339, 590
MspI	CCGG	1 cut(s)	641
MwoI	GCNNNNNNNGC	4 cut(s)	64, 104, 392, 524
NdeII	GATC	2 cut(s)	90, 370
NlaIII	CATG	2 cut(s)	238, 598
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	227
PagI	TCATGA	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	2 cut(s)	289, 577
PpsI	GAGTC	2 cut(s)	289, 577
Psp124BI	GAGCTC	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	445
PspPI	GGNCC	1 cut(s)	627
PstNI	CAGNNNCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	80, 188
RsaNI	GTAC	2 cut(s)	79, 187
SacI	GAGCTC	1 cut(s)	213
SaqAI	TTAA	2 cut(s)	339, 590
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	90, 370
Sau96I	GGNCC	1 cut(s)	627
SchI	GAGTC	2 cut(s)	290, 578
SduI	GDGCHC	2 cut(s)	100, 213
SfaNI	GCATC	2 cut(s)	262, 691
SinI	GGWCC	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	1 cut(s)	490
SsiI	CCGC	2 cut(s)	58, 671
SspMI	CTAG	1 cut(s)	402
SstI	GAGCTC	1 cut(s)	213
TaaI	ACNGT	2 cut(s)	123, 289
TaiI	ACGT	2 cut(s)	39, 90
TaqI	TCGA	3 cut(s)	51, 128, 279
TasI	AATT	1 cut(s)	490
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	61
Tru1I	TTAA	2 cut(s)	339, 590
Tru9I	TTAA	2 cut(s)	339, 590
TscAI	CASTG	2 cut(s)	232, 292
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	4 cut(s)	320, 395, 495, 549
TspGWI	ACGGA	2 cut(s)	115, 252
TspRI	CASTG	2 cut(s)	232, 292
VpaK11BI	GGWCC	1 cut(s)	627
XapI	RAATTY	1 cut(s)	490
XspI	CTAG	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.