AT2G42670

cysteine dioxygenase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004451
Physical Location & Seq
Reverse (-)
17771697 .. 17774647
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42670.2

Sequence Viewer

Length: 726 bp
ATGCCTTACTTTGCTCAGAGGCTTTACAATACTTGCAAGGCGTCTTTCTCTTCAGACGGACCAATAACAGAAGATGCTCTGGAGAAGGTTCGCAATGTCTTGGAGAAAATCAAGCCATCTGATGTTGGAATTGAGCAGGATGCTCAATTGGCACGGTCCAGGTCTGGTCCTCTCAATGAACGCAATGGAAGTAATCAGTCTCCCCCAGCAATAAAGTATCTTCATTTGCATGAGTGTGACAGTTTCTCTATAGGAATCTTCTGTATGCCACCTTCTTCTATGATACCTCTTCATAACCATCCGGGCATGACCGTGCTAAGCAAGCTCGTTTATGGTTCAATGCATGTGAAGTCATATGATTGGCTAGAGCCTCAACTGACCGAACCAGAGGATCCATCACAAGCAAGACCTGCTAAACTGGTGAAGGATACTGAGATGACGGCTCAAAGCCCAGTAACAACATTATATCCGAAAAGTGGTGGCAACATTCACTGTTTCAAAGCCATCACCCATTGTGCTATTCTTGACATCTTAGCTCCACCTTACTCTTCAGAGCATGATCGGCATTGCACTTACTTCCGGAAATCCAGAAGAGAAGACTTACCAGGTGAATTAGAAGTGGATGGAGAAGTGGTCACAGACGTGACATGGCTTGAGGAATTTCAACCGCCTGATGACTTTGTGATACGACGAATTCCGTACAGAGGTCCTGTCATTAGAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

241

Amino Acids

27.18

Weight (kDa)

5.85

Isoelectric Point (pI)

64.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 33 - 240 8e-80 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 418
AccIII TCCGGA 1 cut(s) 579
AciI CCGC 1 cut(s) 668
AclWI GGATC 2 cut(s) 386, 399
AcsI RAATTY 2 cut(s) 659, 693
AcuI CTGAAG 2 cut(s) 36, 534
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 1 cut(s) 701
AfiI CCNNNNNNNGG 2 cut(s) 476, 704
AgsI TTSAA 3 cut(s) 339, 499, 665
AjiI CACGTC 1 cut(s) 643
AjnI CCWGG 2 cut(s) 158, 604
AleI CACNNNNGTG 1 cut(s) 641
AluBI AGCT 2 cut(s) 325, 536
AluI AGCT 2 cut(s) 325, 536
Alw26I GTCTC 1 cut(s) 204
AlwI GGATC 2 cut(s) 386, 399
Aor13HI TCCGGA 1 cut(s) 579
ApoI RAATTY 2 cut(s) 659, 693
AspS9I GGNCC 4 cut(s) 59, 156, 167, 707
AsuC2I CCSGG 1 cut(s) 303
AsuHPI GGTGA 3 cut(s) 433, 499, 620
AvaII GGWCC 4 cut(s) 59, 156, 167, 707
BamHI GGATCC 1 cut(s) 391
BarI GAAGNNNNNNTAC 2 cut(s) 256, 288
BbsI GAAGAC 1 cut(s) 603
BccI CCATC 5 cut(s) 124, 306, 403, 512, 617
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 2 cut(s) 160, 606
BciVI GTATCC 1 cut(s) 421
BcnI CCSGG 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 365
BfmI CTRYAG 1 cut(s) 249
BfuAI ACCTGC 1 cut(s) 418
BfuI GTATCC 1 cut(s) 421
BlpI GCTNAGC 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 160, 303, 606
Bme18I GGWCC 4 cut(s) 59, 156, 167, 707
BmgBI CACGTC 1 cut(s) 643
BmgT120I GGNCC 4 cut(s) 59, 156, 167, 707
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 3 cut(s) 160, 303, 606
BmrI ACTGGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 64, 130
BmuI ACTGGG 1 cut(s) 446
BpiI GAAGAC 1 cut(s) 603
BpmI CTGGAG 1 cut(s) 101
Bpu1102I GCTNAGC 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 674
BpuMI CCSGG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 41
BsaWI WCCGGW 1 cut(s) 579
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 2 cut(s) 476, 704
Bse1I ACTGG 2 cut(s) 423, 452
Bse3DI GCAATG 3 cut(s) 100, 190, 565
BseAI TCCGGA 1 cut(s) 579
BseBI CCWGG 2 cut(s) 160, 606
BseGI GGATG 3 cut(s) 145, 298, 628
BseLI CCNNNNNNNGG 2 cut(s) 476, 704
BseMI GCAATG 3 cut(s) 100, 190, 565
BseMII CTCAG 2 cut(s) 29, 423
BseNI ACTGG 2 cut(s) 423, 452
BseYI CCCAGC 1 cut(s) 205
BsiSI CCGG 2 cut(s) 302, 580
BslI CCNNNNNNNGG 2 cut(s) 476, 704
BsmAI GTCTC 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 579
Bsp143I GATC 2 cut(s) 391, 559
Bsp1720I GCTNAGC 1 cut(s) 317
BspACI CCGC 1 cut(s) 668
BspCNI CTCAG 2 cut(s) 28, 424
BspEI TCCGGA 1 cut(s) 579
BspLI GGNNCC 1 cut(s) 393
BspMI ACCTGC 1 cut(s) 418
BspPI GGATC 2 cut(s) 386, 399
BsrDI GCAATG 3 cut(s) 100, 190, 565
BsrI ACTGG 2 cut(s) 423, 452
BssMI GATC 2 cut(s) 391, 559
BssNI GRCGYC 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 160, 606
Bst4CI ACNGT 4 cut(s) 156, 242, 313, 494
Bst6I CTCTTC 4 cut(s) 55, 294, 553, 586
BstACI GRCGYC 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 323
BstDEI CTNAG 4 cut(s) 15, 317, 432, 532
BstF5I GGATG 3 cut(s) 145, 298, 628
BstKTI GATC 2 cut(s) 394, 562
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 391, 559
BstMWI GCNNNNNNNGC 4 cut(s) 149, 322, 410, 562
BstNI CCWGG 2 cut(s) 160, 606
BstNSI RCATGY 1 cut(s) 347
BstSCI CCNGG 3 cut(s) 158, 301, 604
BstSFI CTRYAG 1 cut(s) 249
BstV2I GAAGAC 1 cut(s) 603
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuI GTATCC 1 cut(s) 421
BtrI CACGTC 1 cut(s) 643
BtsCI GGATG 3 cut(s) 145, 298, 628
BtsIMutI CAGTG 1 cut(s) 490
BveI ACCTGC 1 cut(s) 418
Cac8I GCNNGC 1 cut(s) 323
Cfr13I GGNCC 4 cut(s) 59, 156, 167, 707
CseI GACGC 1 cut(s) 30
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 700
CviAII CATG 5 cut(s) 230, 307, 344, 557, 648
CviQI GTAC 1 cut(s) 700
DdeI CTNAG 4 cut(s) 15, 317, 432, 532
DpnI GATC 2 cut(s) 393, 561
DpnII GATC 2 cut(s) 391, 559
Eam1104I CTCTTC 4 cut(s) 55, 294, 553, 586
EarI CTCTTC 4 cut(s) 55, 294, 553, 586
Eco47I GGWCC 4 cut(s) 59, 156, 167, 707
Eco57I CTGAAG 2 cut(s) 36, 534
EcoO109I RGGNCCY 1 cut(s) 707
EcoRI GAATTC 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 158, 604
EcoT22I ATGCAT 1 cut(s) 345
FaeI CATG 5 cut(s) 233, 310, 347, 560, 651
FatI CATG 5 cut(s) 229, 306, 343, 556, 647
FauNDI CATATG 1 cut(s) 355
FokI GGATG 3 cut(s) 152, 285, 635
FspBI CTAG 1 cut(s) 365
GsaI CCCAGC 1 cut(s) 209
GsuI CTGGAG 1 cut(s) 101
HapII CCGG 2 cut(s) 302, 580
HgaI GACGC 1 cut(s) 30
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 5 cut(s) 233, 310, 347, 560, 651
HinfI GANTC 1 cut(s) 255
HpaII CCGG 2 cut(s) 302, 580
HphI GGTGA 3 cut(s) 433, 499, 620
Hpy188I TCNGA 5 cut(s) 18, 55, 121, 471, 553
Hpy188III TCNNGA 4 cut(s) 80, 524, 580, 588
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 3 cut(s) 79, 282, 418
HpyCH4III ACNGT 4 cut(s) 156, 242, 313, 494
HpyCH4IV ACGT 1 cut(s) 642
HpyCH4V TGCA 4 cut(s) 36, 229, 343, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 322, 410, 562
HpyF3I CTNAG 4 cut(s) 15, 317, 432, 532
HpySE526I ACGT 1 cut(s) 642
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 5 cut(s) 233, 310, 347, 560, 651
Kpn2I TCCGGA 1 cut(s) 579
Kzo9I GATC 2 cut(s) 391, 559
LmnI GCTCC 1 cut(s) 541
LweI GCATC 2 cut(s) 64, 130
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 1 cut(s) 365
MaeII ACGT 1 cut(s) 642
MaeIII GTNAC 4 cut(s) 236, 454, 634, 643
MalI GATC 2 cut(s) 393, 561
MboI GATC 2 cut(s) 391, 559
MboII GAAGA 9 cut(s) 42, 83, 212, 250, 267, 281, 540, 603, 608
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 1 cut(s) 391
MluCI AATT 5 cut(s) 129, 146, 611, 659, 693
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 7 cut(s) 12, 180, 297, 381, 382, 649, 698
Mph1103I ATGCAT 1 cut(s) 345
MroI TCCGGA 1 cut(s) 579
MslI CAYNNNNRTG 4 cut(s) 228, 234, 311, 641
MspI CCGG 2 cut(s) 302, 580
MspR9I CCNGG 3 cut(s) 160, 303, 606
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 2 cut(s) 160, 606
MwoI GCNNNNNNNGC 4 cut(s) 149, 322, 410, 562
NciI CCSGG 1 cut(s) 303
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 391, 559
NlaIII CATG 5 cut(s) 233, 310, 347, 560, 651
NlaIV GGNNCC 1 cut(s) 393
NmuCI GTSAC 3 cut(s) 236, 634, 643
NsiI ATGCAT 1 cut(s) 345
NspI RCATGY 1 cut(s) 347
OliI CACNNNNGTG 1 cut(s) 641
PfeI GAWTC 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 707
Psp5II RGGWCCY 1 cut(s) 707
Psp6I CCWGG 2 cut(s) 158, 604
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 158, 604
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 4 cut(s) 59, 156, 167, 707
PspPPI RGGWCCY 1 cut(s) 707
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 1 cut(s) 701
RsaNI GTAC 1 cut(s) 700
RseI CAYNNNNRTG 4 cut(s) 228, 234, 311, 641
Sau3AI GATC 2 cut(s) 391, 559
Sau96I GGNCC 4 cut(s) 59, 156, 167, 707
ScrFI CCNGG 3 cut(s) 160, 303, 606
SexAI ACCWGGT 1 cut(s) 604
SfaNI GCATC 2 cut(s) 64, 130
SfcI CTRYAG 1 cut(s) 249
SinI GGWCC 4 cut(s) 59, 156, 167, 707
SmiMI CAYNNNNRTG 4 cut(s) 228, 234, 311, 641
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
Sse9I AATT 5 cut(s) 129, 146, 611, 659, 693
SsiI CCGC 1 cut(s) 668
SspMI CTAG 1 cut(s) 365
StyD4I CCNGG 3 cut(s) 158, 301, 604
TaaI ACNGT 4 cut(s) 156, 242, 313, 494
TaiI ACGT 1 cut(s) 645
TaqII GACCGA 1 cut(s) 395
TasI AATT 5 cut(s) 129, 146, 611, 659, 693
TfiI GAWTC 1 cut(s) 255
TscAI CASTG 1 cut(s) 497
TseFI GTSAC 3 cut(s) 236, 634, 643
Tsp45I GTSAC 3 cut(s) 236, 634, 643
TspDTI ATGAA 3 cut(s) 192, 212, 281
TspGWI ACGGA 2 cut(s) 72, 687
TspRI CASTG 1 cut(s) 497
VpaK11BI GGWCC 4 cut(s) 59, 156, 167, 707
XapI RAATTY 2 cut(s) 659, 693
XceI RCATGY 1 cut(s) 347
XspI CTAG 1 cut(s) 365
Zsp2I ATGCAT 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.