AT3G58670

cysteine dioxygenase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004451
Physical Location & Seq
Reverse (-)
21703385 .. 21706137
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G58670.4

Sequence Viewer

Length: 729 bp
ATGCCATATTTTATTCAGAGGCTTTTCAATACTTGCAAGTCATCTCTCTCACCTAATGGTCCTGTGTCTGAGGAGGCCTTAGACAAGGTTCGCAATGTCTTGGAGAAAATCAAGCCGTCTGATGTTGGTCTCGAACAGGAAGCTCAATTGGTGCGTAATTGGCCTGGTCCTGGGAACGAGCGTAATGGAAACCATCATTCTCTGCCAGCAATAAAATACCTTCAGTTACATGAGTGTGACAGCTTCTCGATTGGAATTTTCTGCATGCCACCTGGGTCTATCATACCACTTCATAATCATCCAGGCATGACAGTGCTAAGCAAGCTTGTTTATGGTTCAATGCACGTTAAGTCATATGATTGGGCTGAGCCTGACCAATCAGAGCTAGACGATCCATTACAAGCAAGACCCGCGAAGCTGGTCAAGGATATTGATATGACTTCCCCTAGCCCAGCAACCACTCTATATCCAACAACCGGTGGCAACATTCATTGTTTCAAAGCCATTACTCATTGTGCAATCTTCGACATCTTATCTCCTCCATACTCTTCTACTCATGGCAGACACTGCAACTACTTCCGAAAATCCCCAATGCTAGACTTACCTGGTGAGATTGAAGTGATGAATGGAGAAGTGATCTCAAATGTGACATGGCTTGAAGAGTATCAACCTCCAGATAACTTTGTGATATGGAGAGTTCCGTACAGAGGTCCAGTGATTAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00430 ko01100 map00430 map01100
Pfam Domains
Protein Families
PCO_ADO

Protein Analysis

242

Amino Acids

27.22

Weight (kDa)

6.19

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCO_ADO PF07847 17 - 197 7.4e-72 PCO_ADO
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 413
AciI CCGC 1 cut(s) 411
AclWI GGATC 1 cut(s) 386
AcsI RAATTY 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 704
AfiI CCNNNNNNNGG 3 cut(s) 170, 476, 707
AgeI ACCGGT 1 cut(s) 476
AgsI TTSAA 5 cut(s) 28, 339, 499, 617, 659
AjnI CCWGG 5 cut(s) 163, 169, 271, 301, 604
AluBI AGCT 5 cut(s) 143, 243, 325, 385, 418
AluI AGCT 5 cut(s) 143, 243, 325, 385, 418
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 386
AlwNI CAGNNNCTG 1 cut(s) 567
AoxI GGCC 2 cut(s) 75, 161
ApoI RAATTY 1 cut(s) 255
AsiGI ACCGGT 1 cut(s) 476
AspS9I GGNCC 3 cut(s) 59, 167, 710
AsuHPI GGTGA 2 cut(s) 42, 620
AvaII GGWCC 3 cut(s) 59, 167, 710
BccI CCATC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 5 cut(s) 165, 171, 273, 303, 606
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 3 cut(s) 386, 447, 596
BlpI GCTNAGC 2 cut(s) 317, 366
Bme1390I CCNGG 5 cut(s) 165, 171, 273, 303, 606
Bme18I GGWCC 3 cut(s) 59, 167, 710
BmgT120I GGNCC 3 cut(s) 59, 167, 710
BmrFI CCNGG 5 cut(s) 165, 171, 273, 303, 606
BpmI CTGGAG 1 cut(s) 657
Bpu1102I GCTNAGC 2 cut(s) 317, 366
BsaI GGTCTC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 170, 272
BsaWI WCCGGW 1 cut(s) 476
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 476, 707
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 713
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 5 cut(s) 165, 171, 273, 303, 606
BseDI CCNNGG 2 cut(s) 170, 272
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 3 cut(s) 170, 476, 707
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 60, 357
BseNI ACTGG 1 cut(s) 713
BseRI GAGGAG 2 cut(s) 86, 528
BseYI CCCAGC 1 cut(s) 451
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 2 cut(s) 77, 163
BshTI ACCGGT 1 cut(s) 476
BsiSI CCGG 1 cut(s) 477
BslI CCNNNNNNNGG 3 cut(s) 170, 476, 707
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 2 cut(s) 77, 163
Bso31I GGTCTC 1 cut(s) 134
Bsp143I GATC 2 cut(s) 391, 636
Bsp1720I GCTNAGC 2 cut(s) 317, 366
BspACI CCGC 1 cut(s) 411
BspANI GGCC 2 cut(s) 77, 163
BspCNI CTCAG 2 cut(s) 61, 358
BspFNI CGCG 1 cut(s) 413
BspPI GGATC 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 100
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 1 cut(s) 713
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 2 cut(s) 170, 272
BssMI GATC 2 cut(s) 391, 636
Bst2UI CCWGG 5 cut(s) 165, 171, 273, 303, 606
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 553, 654
BstAPI GCANNNNNTGC 1 cut(s) 567
BstC8I GCNNGC 3 cut(s) 207, 266, 323
BstDEI CTNAG 4 cut(s) 69, 79, 317, 366
BstF5I GGATG 1 cut(s) 298
BstFNI CGCG 1 cut(s) 413
BstKTI GATC 2 cut(s) 394, 639
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 2 cut(s) 391, 636
BstMWI GCNNNNNNNGC 4 cut(s) 160, 322, 410, 567
BstNI CCWGG 5 cut(s) 165, 171, 273, 303, 606
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 5 cut(s) 163, 169, 271, 301, 604
BstUI CGCG 1 cut(s) 413
BsuRI GGCC 2 cut(s) 77, 163
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 565
BtsIMutI CAGTG 3 cut(s) 318, 565, 720
Cac8I GCNNGC 3 cut(s) 207, 266, 323
CaiI CAGNNNCTG 1 cut(s) 567
Cfr10I RCCGGY 1 cut(s) 476
Cfr13I GGNCC 3 cut(s) 59, 167, 710
CsiI ACCWGGT 1 cut(s) 604
Csp6I GTAC 1 cut(s) 703
CspAI ACCGGT 1 cut(s) 476
CviAII CATG 5 cut(s) 230, 265, 307, 557, 651
CviQI GTAC 1 cut(s) 703
DdeI CTNAG 4 cut(s) 69, 79, 317, 366
DpnI GATC 2 cut(s) 393, 638
DpnII GATC 2 cut(s) 391, 636
Eam1104I CTCTTC 2 cut(s) 553, 654
EarI CTCTTC 2 cut(s) 553, 654
Eco147I AGGCCT 1 cut(s) 77
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 3 cut(s) 59, 167, 710
Eco57I CTGAAG 1 cut(s) 206
EcoRII CCWGG 5 cut(s) 163, 169, 271, 301, 604
FaeI CATG 5 cut(s) 233, 268, 310, 560, 654
FatI CATG 5 cut(s) 229, 264, 306, 556, 650
FauI CCCGC 1 cut(s) 418
FauNDI CATATG 1 cut(s) 355
FokI GGATG 1 cut(s) 285
FspBI CTAG 3 cut(s) 386, 447, 596
GsaI CCCAGC 1 cut(s) 455
GsuI CTGGAG 1 cut(s) 657
HaeIII GGCC 2 cut(s) 77, 163
HapII CCGG 1 cut(s) 477
Hin1II CATG 5 cut(s) 233, 268, 310, 560, 654
HindIII AAGCTT 1 cut(s) 323
HpaII CCGG 1 cut(s) 477
HphI GGTGA 2 cut(s) 42, 620
Hpy188I TCNGA 5 cut(s) 18, 70, 121, 382, 581
Hpy188III TCNNGA 3 cut(s) 131, 247, 674
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 5 cut(s) 36, 264, 343, 518, 570
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 322, 410, 567
HpyF3I CTNAG 4 cut(s) 69, 79, 317, 366
HpySE526I ACGT 1 cut(s) 345
Hsp92II CATG 5 cut(s) 233, 268, 310, 560, 654
Kzo9I GATC 2 cut(s) 391, 636
MabI ACCWGGT 1 cut(s) 604
MaeI CTAG 3 cut(s) 386, 447, 596
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 3 cut(s) 225, 236, 646
MalI GATC 2 cut(s) 393, 638
MboI GATC 2 cut(s) 391, 636
MboII GAAGA 3 cut(s) 514, 540, 671
MfeI CAATTG 1 cut(s) 146
MluCI AATT 3 cut(s) 146, 157, 255
MmeI TCCRAC 1 cut(s) 494
MnlI CCTC 6 cut(s) 12, 64, 67, 549, 681, 701
MseI TTAA 1 cut(s) 348
MslI CAYNNNNRTG 2 cut(s) 234, 311
MspI CCGG 1 cut(s) 477
MspR9I CCNGG 5 cut(s) 165, 171, 273, 303, 606
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 5 cut(s) 165, 171, 273, 303, 606
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 4 cut(s) 160, 322, 410, 567
NdeI CATATG 1 cut(s) 355
NdeII GATC 2 cut(s) 391, 636
NlaIII CATG 5 cut(s) 233, 268, 310, 560, 654
NmuCI GTSAC 2 cut(s) 236, 646
NspI RCATGY 1 cut(s) 268
PaeI GCATGC 1 cut(s) 268
PceI AGGCCT 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 476
Psp6I CCWGG 5 cut(s) 163, 169, 271, 301, 604
PspFI CCCAGC 1 cut(s) 451
PspGI CCWGG 5 cut(s) 163, 169, 271, 301, 604
PspPI GGNCC 3 cut(s) 59, 167, 710
PstNI CAGNNNCTG 1 cut(s) 567
RsaI GTAC 1 cut(s) 704
RsaNI GTAC 1 cut(s) 703
RseI CAYNNNNRTG 2 cut(s) 234, 311
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 2 cut(s) 391, 636
Sau96I GGNCC 3 cut(s) 59, 167, 710
ScrFI CCNGG 5 cut(s) 165, 171, 273, 303, 606
SexAI ACCWGGT 1 cut(s) 604
SinI GGWCC 3 cut(s) 59, 167, 710
SmiMI CAYNNNNRTG 2 cut(s) 234, 311
SphI GCATGC 1 cut(s) 268
Sse9I AATT 3 cut(s) 146, 157, 255
SseBI AGGCCT 1 cut(s) 77
SsiI CCGC 1 cut(s) 411
SspMI CTAG 3 cut(s) 386, 447, 596
StuI AGGCCT 1 cut(s) 77
StyD4I CCNGG 5 cut(s) 163, 169, 271, 301, 604
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 348
TaqI TCGA 3 cut(s) 132, 248, 525
TasI AATT 3 cut(s) 146, 157, 255
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 3 cut(s) 318, 572, 720
TseFI GTSAC 2 cut(s) 236, 646
Tsp45I GTSAC 2 cut(s) 236, 646
TspDTI ATGAA 3 cut(s) 281, 479, 638
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 3 cut(s) 318, 572, 720
VpaK11BI GGWCC 3 cut(s) 59, 167, 710
XapI RAATTY 1 cut(s) 255
XceI RCATGY 1 cut(s) 268
XspI CTAG 3 cut(s) 386, 447, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.