Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005625.1

Orthogroup ID

OG0004451

Physical Location & Seq

Genomic Coordinates Reverse (-)

36000 .. 45263

Gene Structure 9264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005625.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

atgatctatgagatctctggaaacttctttggggacgttcggttaggttttcagagaagtctggcagctggcggttggtgttcggattccggtgacaagagtcccgcgtttgttcctcttcttattttgctaccgatttctcacttcatcgcctacctcccgcttcgttttccacctaacccttcatggctctcaacccaggtgctcacagatgagattggcgagagggaacaaataagtgccatgcagcttcattggctctggtccattcagttaagttggtaccgtctttgcatcatgccatattatattcagagactctataatctgtgcaaatcatctctttcgcccaatggacctctttccgaagaagccctcgaaaaagttcgcactaaactagagaaaattaagcctgcagatgtaggtctagaacaagaggcacaagtggtacgcaactggtcaggtgctatgcttgagcgtaatgtggatcatcagtcactgccaccaatcaaatacttgcatttacatgaatgcgatagtttctctatgggaatcttttgcatgccgccttcctctatcatacctcttcataatcatccaggaatgactgtgttgagcaagcttatatatggtactttgcgtgttaattcatatgactggcttgatttacccgggtctgctgatccatcagaagcaagaccggcgaaacttgtcagagatgatgagatgaccgctccttgcccggcaacagttctctatcccacaagtggaggcaacatccatagtttcaaagctataactccctgtgccatatttgacattctagctccaccttattcgtctgaagatggtcgacactgcacttatttccggaagtcctcaagaaaagatctgcctggtgatgttgagtatgatggagtcacagctcctcaagtgacttggttagaagagtttcaacctcccgacaactttgtgattcggagagggctctacaggggtcctgttattcgaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0008152 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00430 ko01100 map00430 map01100

Pfam Domains

Protein Families

PCO_ADO

Protein Analysis

338

Amino Acids

38.13

Weight (kDa)

6.0

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004451)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42670 AT2G42670 AT2G42670 AT3G58670 AT3G58670 AT3G58670 AT3G58670
fragaria_vesca	FvH4_6g27560 FvH4_6g27560 FvH4_6g27560
malus_domestica	MD09G1236500.v1.1 MD17G1266100.v1.1
prunus_persica	Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1 Prupe.3G116600_v2.0.a1
pyrus_communis	pycom09g15490 pycom17g26570
rosa_chinensis	RchiOBHm_Chr2g0129981
rosa_laevigata	RLG00000019117
rosa_multiflora	Rmu_sc0005625.1_g000009
rosa_roxburghii	Rroxscaffold_2G00114180
rosa_rugosa	Rorug02G0290500 Rorug02G0290600 Rorug02G0290700
rosa_samantha	Rh2AG341900 Rh2BG350100 Rh2CG329300 Rh2DG368200
rosa_wichuraiana	Rw2G027720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AccBSI	CCGCTC	1 cut(s)	734
AccI	GTMKAC	1 cut(s)	853
AccII	CGCG	1 cut(s)	107
AccIII	TCCGGA	1 cut(s)	870
AciI	CCGC	5 cut(s)	72, 105, 161, 566, 732
AclWI	GGATC	2 cut(s)	495, 677
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	3 cut(s)	284, 450, 634
AfiI	CCNNNNNNNGG	1 cut(s)	767
AgsI	TTSAA	2 cut(s)	790, 956
AjnI	CCWGG	3 cut(s)	198, 598, 895
AluBI	AGCT	6 cut(s)	68, 250, 622, 794, 827, 926
AluI	AGCT	6 cut(s)	68, 250, 622, 794, 827, 926
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	2 cut(s)	495, 677
AlwNI	CAGNNNCTG	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	870
ApeKI	GCWGC	2 cut(s)	65, 247
Asp700I	GAANNNNTTC	2 cut(s)	384, 951
Asp718I	GGTACC	1 cut(s)	282
AspS9I	GGNCC	3 cut(s)	264, 356, 998
AsuC2I	CCSGG	3 cut(s)	672, 673, 743
AsuHPI	GGTGA	2 cut(s)	104, 911
AsuII	TTCGAA	1 cut(s)	1009
AvaI	CYCGRG	1 cut(s)	671
AvaII	GGWCC	3 cut(s)	264, 356, 998
BanI	GGYRCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	990
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	77, 259
BccI	CCATC	3 cut(s)	694, 842, 908
BciT130I	CCWGG	3 cut(s)	200, 600, 897
BcnI	CCSGG	3 cut(s)	672, 673, 743
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	3 cut(s)	398, 428, 824
BfmI	CTRYAG	2 cut(s)	414, 991
BglII	AGATCT	2 cut(s)	12, 889
BisI	GCNGC	3 cut(s)	66, 248, 566
BlsI	GCNGC	3 cut(s)	67, 249, 567
Bme1390I	CCNGG	6 cut(s)	200, 600, 672, 673, 743, 897
Bme18I	GGWCC	3 cut(s)	264, 356, 998
BmeT110I	CYCGRG	1 cut(s)	671
BmgT120I	GGNCC	3 cut(s)	264, 356, 998
BmiI	GGNNCC	2 cut(s)	284, 999
BmrFI	CCNGG	6 cut(s)	200, 600, 672, 673, 743, 897
BmsI	GCATC	1 cut(s)	303
BoxI	GACNNNNGTC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	1009
BpuEI	CTTGAG	3 cut(s)	494, 865, 915
BpuMI	CCSGG	3 cut(s)	672, 673, 743
BsaJI	CCNNGG	2 cut(s)	198, 671
BsaWI	WCCGGW	2 cut(s)	89, 870
Bsc4I	CCNNNNNNNGG	1 cut(s)	767
Bse118I	RCCGGY	1 cut(s)	700
Bse1I	ACTGG	2 cut(s)	461, 662
BseAI	TCCGGA	1 cut(s)	870
BseBI	CCWGG	3 cut(s)	200, 600, 897
BseDI	CCNNGG	2 cut(s)	198, 671
BseGI	GGATG	2 cut(s)	595, 777
BseLI	CCNNNNNNNGG	1 cut(s)	767
BseNI	ACTGG	2 cut(s)	461, 662
BseRI	GAGGAG	1 cut(s)	918
BseXI	GCAGC	2 cut(s)	77, 259
BsgI	GTGCAG	1 cut(s)	844
Bsh1236I	CGCG	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	671
BsiSI	CCGG	5 cut(s)	90, 672, 701, 743, 871
BslFI	GGGAC	2 cut(s)	47, 87
BslI	CCNNNNNNNGG	1 cut(s)	767
BsmAI	GTCTC	1 cut(s)	310
BsmFI	GGGAC	2 cut(s)	47, 87
BsmI	GAATGC	1 cut(s)	536
BsoBI	CYCGRG	1 cut(s)	671
Bsp119I	TTCGAA	1 cut(s)	1009
Bsp1286I	GDGCHC	2 cut(s)	207, 990
Bsp13I	TCCGGA	1 cut(s)	870
Bsp143I	GATC	5 cut(s)	3, 12, 487, 682, 889
BspACI	CCGC	5 cut(s)	72, 105, 161, 566, 732
BspEI	TCCGGA	1 cut(s)	870
BspFNI	CGCG	1 cut(s)	107
BspLI	GGNNCC	2 cut(s)	284, 999
BspMAI	CTGCAG	1 cut(s)	418
BspPI	GGATC	2 cut(s)	495, 677
BspT104I	TTCGAA	1 cut(s)	1009
BspT107I	GGYRCC	1 cut(s)	282
BsrBI	CCGCTC	1 cut(s)	734
BsrFI	RCCGGY	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	461, 662
BssAI	RCCGGY	1 cut(s)	700
BssECI	CCNNGG	2 cut(s)	198, 671
BssMI	GATC	5 cut(s)	3, 12, 487, 682, 889
Bst2UI	CCWGG	3 cut(s)	200, 600, 897
Bst4CI	ACNGT	3 cut(s)	287, 610, 751
Bst6I	CTCTTC	3 cut(s)	123, 591, 942
BstBI	TTCGAA	1 cut(s)	1009
BstC8I	GCNNGC	4 cut(s)	70, 414, 563, 620
BstF5I	GGATG	2 cut(s)	595, 777
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	5 cut(s)	6, 15, 490, 685, 892
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	5 cut(s)	3, 12, 487, 682, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 701
BstNI	CCWGG	3 cut(s)	200, 600, 897
BstNSI	RCATGY	1 cut(s)	565
BstPAI	GACNNNNGTC	1 cut(s)	99
BstSCI	CCNGG	6 cut(s)	198, 598, 670, 671, 741, 895
BstSFI	CTRYAG	2 cut(s)	414, 991
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	77, 259
BstX2I	RGATCY	2 cut(s)	12, 889
BstYI	RGATCY	2 cut(s)	12, 889
BtgZI	GCGATG	1 cut(s)	133
BtsCI	GGATG	2 cut(s)	595, 777
BtsI	GCAGTG	2 cut(s)	497, 856
BtsIMutI	CAGTG	2 cut(s)	497, 856
Cac8I	GCNNGC	4 cut(s)	70, 414, 563, 620
CaiI	CAGNNNCTG	1 cut(s)	499
Cfr10I	RCCGGY	1 cut(s)	700
Cfr13I	GGNCC	3 cut(s)	264, 356, 998
Cfr9I	CCCGGG	1 cut(s)	671
Csp6I	GTAC	3 cut(s)	283, 449, 633
CviAII	CATG	5 cut(s)	186, 244, 298, 527, 562
CviQI	GTAC	3 cut(s)	283, 449, 633
DpnI	GATC	5 cut(s)	5, 14, 489, 684, 891
DpnII	GATC	5 cut(s)	3, 12, 487, 682, 889
Eam1104I	CTCTTC	3 cut(s)	123, 591, 942
EarI	CTCTTC	3 cut(s)	123, 591, 942
Eco24I	GRGCYC	1 cut(s)	990
Eco47I	GGWCC	3 cut(s)	264, 356, 998
Eco57I	CTGAAG	1 cut(s)	864
Eco88I	CYCGRG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	998
EcoRII	CCWGG	3 cut(s)	198, 598, 895
EcoT38I	GRGCYC	1 cut(s)	990
FaeI	CATG	5 cut(s)	189, 247, 301, 530, 565
FaqI	GGGAC	2 cut(s)	47, 87
FatI	CATG	5 cut(s)	185, 243, 297, 526, 561
FauI	CCCGC	2 cut(s)	112, 168
FauNDI	CATATG	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	853
Fnu4HI	GCNGC	3 cut(s)	66, 248, 566
FokI	GGATG	2 cut(s)	582, 764
FriOI	GRGCYC	1 cut(s)	990
Fsp4HI	GCNGC	3 cut(s)	66, 248, 566
FspBI	CTAG	3 cut(s)	398, 428, 824
GluI	GCNGC	3 cut(s)	66, 248, 566
HapII	CCGG	5 cut(s)	90, 672, 701, 743, 871
Hin1II	CATG	5 cut(s)	189, 247, 301, 530, 565
HincII	GTYRAC	1 cut(s)	854
HindII	GTYRAC	1 cut(s)	854
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	6 cut(s)	86, 100, 318, 552, 918, 976
HpaII	CCGG	5 cut(s)	90, 672, 701, 743, 871
HphI	GGTGA	2 cut(s)	104, 911
Hpy166II	GTNNAC	1 cut(s)	854
Hpy188I	TCNGA	8 cut(s)	54, 85, 315, 367, 691, 716, 844, 981
Hpy188III	TCNNGA	5 cut(s)	18, 428, 871, 882, 962
Hpy8I	GTNNAC	1 cut(s)	854
HpyAV	CCTTC	2 cut(s)	192, 579
HpyCH4III	ACNGT	3 cut(s)	287, 610, 751
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	7 cut(s)	247, 294, 333, 416, 520, 561, 861
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 701
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	5 cut(s)	189, 247, 301, 530, 565
Kpn2I	TCCGGA	1 cut(s)	870
KpnI	GGTACC	1 cut(s)	286
Kzo9I	GATC	5 cut(s)	3, 12, 487, 682, 889
LmnI	GCTCC	3 cut(s)	739, 832, 931
Lsp1109I	GCAGC	2 cut(s)	77, 259
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	3 cut(s)	398, 428, 824
MaeII	ACGT	1 cut(s)	36
MaeIII	GTNAC	4 cut(s)	92, 495, 919, 934
MalI	GATC	5 cut(s)	5, 14, 489, 684, 891
MbiI	CCGCTC	1 cut(s)	734
MboI	GATC	5 cut(s)	3, 12, 487, 682, 889
MboII	GAAGA	5 cut(s)	110, 380, 578, 857, 959
MflI	RGATCY	2 cut(s)	12, 889
MhlI	GDGCHC	2 cut(s)	207, 990
MluCI	AATT	2 cut(s)	405, 646
MlyI	GAGTC	3 cut(s)	109, 312, 927
MroI	TCCGGA	1 cut(s)	870
MroXI	GAANNNNTTC	2 cut(s)	384, 951
MseI	TTAA	3 cut(s)	275, 408, 645
MslI	CAYNNNNRTG	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	5 cut(s)	90, 672, 701, 743, 871
MspR9I	CCNGG	6 cut(s)	200, 600, 672, 673, 743, 897
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	3 cut(s)	200, 600, 897
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	256, 701
NciI	CCSGG	3 cut(s)	672, 673, 743
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	5 cut(s)	3, 12, 487, 682, 889
NlaIII	CATG	5 cut(s)	189, 247, 301, 530, 565
NlaIV	GGNNCC	2 cut(s)	284, 999
NmuCI	GTSAC	4 cut(s)	92, 495, 919, 934
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	1009
PaeI	GCATGC	1 cut(s)	565
PctI	GAATGC	1 cut(s)	536
PdmI	GAANNNNTTC	2 cut(s)	384, 951
PfeI	GAWTC	3 cut(s)	86, 552, 976
PfoI	TCCNGGA	1 cut(s)	598
PkrI	GCNGC	3 cut(s)	67, 249, 567
PleI	GAGTC	3 cut(s)	108, 312, 926
PpsI	GAGTC	3 cut(s)	108, 312, 926
PpuMI	RGGWCCY	1 cut(s)	998
PshAI	GACNNNNGTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	998
Psp6I	CCWGG	3 cut(s)	198, 598, 895
PspGI	CCWGG	3 cut(s)	198, 598, 895
PspN4I	GGNNCC	2 cut(s)	284, 999
PspPI	GGNCC	3 cut(s)	264, 356, 998
PspPPI	RGGWCCY	1 cut(s)	998
PstI	CTGCAG	1 cut(s)	418
PstNI	CAGNNNCTG	1 cut(s)	499
PsuI	RGATCY	2 cut(s)	12, 889
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	3 cut(s)	284, 450, 634
RsaNI	GTAC	3 cut(s)	283, 449, 633
RseI	CAYNNNNRTG	1 cut(s)	525
SalI	GTCGAC	1 cut(s)	852
SaqAI	TTAA	3 cut(s)	275, 408, 645
SatI	GCNGC	3 cut(s)	66, 248, 566
Sau3AI	GATC	5 cut(s)	3, 12, 487, 682, 889
Sau96I	GGNCC	3 cut(s)	264, 356, 998
SchI	GAGTC	3 cut(s)	109, 312, 927
ScrFI	CCNGG	6 cut(s)	200, 600, 672, 673, 743, 897
SduI	GDGCHC	2 cut(s)	207, 990
SfaNI	GCATC	1 cut(s)	303
SfcI	CTRYAG	2 cut(s)	414, 991
SfuI	TTCGAA	1 cut(s)	1009
SinI	GGWCC	3 cut(s)	264, 356, 998
SmaI	CCCGGG	1 cut(s)	673
SmiMI	CAYNNNNRTG	1 cut(s)	525
SmlI	CTYRAG	3 cut(s)	473, 880, 930
SmoI	CTYRAG	3 cut(s)	473, 880, 930
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	2 cut(s)	405, 646
SsiI	CCGC	5 cut(s)	72, 105, 161, 566, 732
SspMI	CTAG	3 cut(s)	398, 428, 824
StyD4I	CCNGG	6 cut(s)	198, 598, 670, 671, 741, 895
TaaI	ACNGT	3 cut(s)	287, 610, 751
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	378, 853, 1009
TasI	AATT	2 cut(s)	405, 646
TauI	GCSGC	1 cut(s)	568
TfiI	GAWTC	3 cut(s)	86, 552, 976
Tru1I	TTAA	3 cut(s)	275, 408, 645
Tru9I	TTAA	3 cut(s)	275, 408, 645
TscAI	CASTG	2 cut(s)	504, 863
TseFI	GTSAC	4 cut(s)	92, 495, 919, 934
TseI	GCWGC	2 cut(s)	65, 247
Tsp45I	GTSAC	4 cut(s)	92, 495, 919, 934
TspDTI	ATGAA	6 cut(s)	136, 174, 242, 543, 578, 639
TspMI	CCCGGG	1 cut(s)	671
TspRI	CASTG	2 cut(s)	504, 863
VpaK11BI	GGWCC	3 cut(s)	264, 356, 998
XbaI	TCTAGA	1 cut(s)	427
XceI	RCATGY	1 cut(s)	565
XmaI	CCCGGG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	853
XmnI	GAANNNNTTC	2 cut(s)	384, 951
XspI	CTAG	3 cut(s)	398, 428, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.